Crystal structure of TRAF6 in complex with Ubc13 in the P1 space group
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d3hctb_ | Alpha and beta proteins (a+b) | UBC-like | UBC-like | UBC-related | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RING/U-box like | 8053202 | 3000160 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | beta-beta-alpha zinc fingers | 8053196 | 3001077 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | UBC-like | 8034195 | 3000570 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | zf-C3HC4 | e3hctA1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-C3HC4 | ECOD (1.6) |
A | zf-RAG1_like | e3hctA2 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-RAG1_like | ECOD (1.6) |
B | UQ_con | e3hctB1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
B | 3.10.110.10 | Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13923 | Zinc finger, C3HC4 type (RING finger) (zf-C3HC4_2) | Zinc finger, C3HC4 type (RING finger) | Domain | ||
PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012227 | TNF receptor-associated factor TRAF, metazoa | Family | |
IPR001293 | Zinc finger, TRAF-type | Domain | |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
IPR027139 | TNF receptor-associated factor 6, C3HC3D-type RING zinc finger | Domain | |
IPR001841 | Zinc finger, RING-type | Domain | |
IPR008974 | TRAF-like | Homologous Superfamily | |
IPR037309 | TNF receptor-associated factor 6, MATH domain | Domain | |
IPR002083 | MATH/TRAF domain | Domain | |
IPR017907 | Zinc finger, RING-type, conserved site | Conserved Site | |
IPR049342 | TRAF1-6, MATH domain | Domain | |
IPR041310 | TNF receptor-associated factor 6, zinc finger 2 | Domain | |
IPR016135 | Ubiquitin-conjugating enzyme/RWD-like | Homologous Superfamily | |
IPR023313 | Ubiquitin-conjugating enzyme, active site | Active Site | |
IPR000608 | Ubiquitin-conjugating enzyme E2, catalytic core domain | Domain |