4MQJ | pdb_00004mqj

Structure of Wild-type Fetal Human Hemoglobin HbF

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4mqja_	All alpha proteins	Globin-like	Globin-like	Globins	Hemoglobin, alpha-chain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C [auth G]	d4mqjg_	All alpha proteins	Globin-like	Globin-like	Globins	Hemoglobin, alpha-chain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E [auth C]	d4mqjc_	All alpha proteins	Globin-like	Globin-like	Globins	Hemoglobin, alpha-chain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G [auth E]	d4mqje_	All alpha proteins	Globin-like	Globin-like	Globins	Hemoglobin, alpha-chain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d4mqjb1	All alpha proteins	Globin-like	Globin-like	Globins	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d4mqjb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D [auth H]	d4mqjh1	All alpha proteins	Globin-like	Globin-like	Globins	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D [auth H]	d4mqjh2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F [auth D]	d4mqjd_	All alpha proteins	Globin-like	Globin-like	Globins	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
H [auth F]	d4mqjf1	All alpha proteins	Globin-like	Globin-like	Globins	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
H [auth F]	d4mqjf2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Globin-like	8039836	3000554	SCOP2B (2022-06-29)
C [auth G]	SCOP2B Superfamily	Globin-like	8039836	3000554	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Globin-like	8039836	3000554	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	Globin-like	8039836	3000554	SCOP2B (2022-06-29)
B	SCOP2 Family	Globins	8060997	4000551	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Globin-like	8060998	3000554	SCOP2 (2022-06-29)
D [auth H]	SCOP2B Superfamily	Globin-like	8060998	3000554	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Globin-like	8060998	3000554	SCOP2B (2022-06-29)
H [auth F]	SCOP2B Superfamily	Globin-like	8060998	3000554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Globin	e4mqjA1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Globin	ECOD (1.6)
C [auth G]	Globin	e4mqjG1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Globin	ECOD (1.6)
E [auth C]	Globin	e4mqjC1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Globin	ECOD (1.6)
G [auth E]	Globin	e4mqjE1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Globin	ECOD (1.6)
B	Globin	e4mqjB1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Globin	ECOD (1.6)
D [auth H]	Globin	e4mqjH1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Globin	ECOD (1.6)
F [auth D]	Globin	e4mqjD1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Globin	ECOD (1.6)
H [auth F]	Globin	e4mqjF1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Globin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.490.10	Mainly Alpha	Orthogonal Bundle	Globin-like	Globins	CATH (4.3.0)
C [auth G]	1.10.490.10	Mainly Alpha	Orthogonal Bundle	Globin-like	Globins	CATH (4.3.0)
E [auth C]	1.10.490.10	Mainly Alpha	Orthogonal Bundle	Globin-like	Globins	CATH (4.3.0)
G [auth E]	1.10.490.10	Mainly Alpha	Orthogonal Bundle	Globin-like	Globins	CATH (4.3.0)
B	1.10.490.10	Mainly Alpha	Orthogonal Bundle	Globin-like	Globins	CATH (4.3.0)
D [auth H]	1.10.490.10	Mainly Alpha	Orthogonal Bundle	Globin-like	Globins	CATH (4.3.0)
F [auth D]	1.10.490.10	Mainly Alpha	Orthogonal Bundle	Globin-like	Globins	CATH (4.3.0)
H [auth F]	1.10.490.10	Mainly Alpha	Orthogonal Bundle	Globin-like	Globins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth G], E [auth C], G [auth E]	PF00042	Globin (Globin)	Globin		Domain
B, D [auth H], F [auth D], H [auth F]	PF00042	Globin (Globin)	Globin		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C [auth G], E [auth C], G [auth E]	Hemoglobin subunit alpha	oxygen binding binding small molecule binding oxygen carrier activity molecular carrier activity tetrapyrrole binding heme binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding organic acid binding	catabolic process hydrogen peroxide metabolic process reactive oxygen species metabolic process metabolic process cellular process hydrogen peroxide catabolic process oxygen transport localization transport gas transport establishment of localization one-carbon compound transport carbon dioxide transport nitric oxide transport catabolic process hydrogen peroxide metabolic process reactive oxygen species metabolic process metabolic process cellular process hydrogen peroxide catabolic process oxygen transport localization transport gas transport establishment of localization one-carbon compound transport carbon dioxide transport nitric oxide transport nitrogen compound transport response to hydrogen peroxide response to oxidative stress response to stimulus response to stress response to chemical response to oxygen-containing compound response to reactive oxygen species cellular response to stimulus cellular detoxification cellular response to chemical stimulus detoxification cellular oxidant detoxification cellular response to toxic substance response to toxic substance	protein-containing complex cellular anatomical structure intracellular anatomical structure hemoglobin complex cytoplasm cytosol haptoglobin-hemoglobin complex membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle protein-containing complex cellular anatomical structure intracellular anatomical structure hemoglobin complex cytoplasm cytosol haptoglobin-hemoglobin complex membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle blood microparticle intracellular vesicle membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cytoplasmic vesicle organelle lumen endocytic vesicle lumen endocytic vesicle
B, D [auth H], F [auth D], H [auth F]	Hemoglobin subunit gamma-2	oxygen binding binding small molecule binding hemoglobin binding protein binding hemoglobin alpha binding oxygen carrier activity molecular carrier activity tetrapyrrole binding heme binding organic acid binding cation binding ion binding metal ion binding	catabolic process hydrogen peroxide metabolic process reactive oxygen species metabolic process metabolic process cellular process hydrogen peroxide catabolic process oxygen transport localization transport gas transport establishment of localization one-carbon compound transport carbon dioxide transport cellular response to stimulus catabolic process hydrogen peroxide metabolic process reactive oxygen species metabolic process metabolic process cellular process hydrogen peroxide catabolic process oxygen transport localization transport gas transport establishment of localization one-carbon compound transport carbon dioxide transport cellular response to stimulus cellular detoxification cellular response to chemical stimulus response to stimulus response to chemical detoxification cellular oxidant detoxification cellular response to toxic substance response to toxic substance	protein-containing complex cellular anatomical structure intracellular anatomical structure hemoglobin complex cytoplasm cytosol haptoglobin-hemoglobin complex extracellular region extracellular space blood microparticle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth G], E [auth C], G [auth E]	IPR002338	Hemoglobin, alpha-type	Family
A, C [auth G], E [auth C], G [auth E]	IPR002339	Hemoglobin, pi	Family
A, C [auth G], E [auth C], G [auth E]	IPR009050	Globin-like superfamily	Homologous Superfamily
A, C [auth G], E [auth C], G [auth E]	IPR012292	Globin/Protoglobin	Homologous Superfamily
A, C [auth G], E [auth C], G [auth E]	IPR000971	Globin	Domain
A, C [auth G], E [auth C], G [auth E]	IPR050056	Hemoglobin and related oxygen transporters	Family
B, D [auth H], F [auth D], H [auth F]	IPR050056	Hemoglobin and related oxygen transporters	Family
B, D [auth H], F [auth D], H [auth F]	IPR009050	Globin-like superfamily	Homologous Superfamily
B, D [auth H], F [auth D], H [auth F]	IPR012292	Globin/Protoglobin	Homologous Superfamily
B, D [auth H], F [auth D], H [auth F]	IPR002337	Hemoglobin, beta-type	Family
B, D [auth H], F [auth D], H [auth F]	IPR000971	Globin	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, C [auth G], E [auth C], G [auth E]	Pharos: P69905	alpha thalassemia Heinz body anemia acquired polycythemia vera methemoglobinemia hemoglobin H disease polycythemia familial hemolytic anemia alpha thalassemia-intellectual disability syndrome type 1 carcinoma sarcomatoid carcinoma Mammary Neoplasms, Experimental type 2 diabetes mellitus cerebral infarction hemolytic anemia inborn carbohydrate metabolic disorder alpha thalassemia Heinz body anemia acquired polycythemia vera methemoglobinemia hemoglobin H disease polycythemia familial hemolytic anemia alpha thalassemia-intellectual disability syndrome type 1 carcinoma sarcomatoid carcinoma Mammary Neoplasms, Experimental type 2 diabetes mellitus cerebral infarction hemolytic anemia inborn carbohydrate metabolic disorder mammary neoplasms, animal thalassemia congenital anemia facioscapulohumeral muscular dystrophy familial polycythemia hydrops fetalis lung adenocarcinoma beta thalassemia sickle cell anemia Hb Bart's hydrops fetalis hemoglobin M disease maturity-onset diabetes of the young breast carcinoma undifferentiated carcinoma diabetes mellitus
B, D [auth H], F [auth D], H [auth F]	Pharos: P69892	cyanosis, transient neonatal Oliguria prostate cancer acute kidney failure congenital anemia hereditary persistence of fetal hemoglobin malaria hereditary persistence of fetal hemoglobin-beta-thalassemia syndrome

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.