4XPQ
Crystal structure of Pedobacter saltans GH31 alpha-galactosidase complexed with L-fucose
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | YicI C-terminal domain-like | 8046520 | 4003108 | SCOP2 (2022-06-29) |
A | SCOP2 Family | YicI N-terminal domain-like | 8090433 | 4003123 | SCOP2 (2022-06-29) |
A | SCOP2 Family | YicI catalytic domain-like | 8090435 | 4003298 | SCOP2 (2022-06-29) |
A | SCOP2 Family | YicI post-catalytic domain-like | 8090437 | 4003233 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | YicI C-terminal domain-like | 8090432 | 3000267 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Galactose mutarotase-like | 8090434 | 3000035 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | (Trans)glycosidases | 8090436 | 3000313 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Glycosyl hydrolase domain-like | 8090438 | 3001528 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Glyco_hydro_31_C | e4xpqA2 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Glyco_hydro_31_C | ECOD (1.6) |
A | Gal_mutarotas_2 | e4xpqA3 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: supersandwich (From Topology) | T: supersandwich | F: Gal_mutarotas_2 | ECOD (1.6) |
A | DUF5110 | e4xpqA4 | A: beta sandwiches | X: Putative glucosidase YicI, C-terminal domain (From Topology) | H: Putative glucosidase YicI, C-terminal domain (From Topology) | T: Putative glucosidase YicI, C-terminal domain | F: DUF5110 | ECOD (1.6) |
A | Glyco_hydro_31_N | e4xpqA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Glyco_hydro_31_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13802 | Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain (Gal_mutarotas_2) | Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain | This entry represents the first of three common domains found in Glycosyl hydrolase 31 family proteins. It has a galactose mutarotase superfamily fold. | Domain | |
PF17137 | Domain of unknown function (DUF5110) (DUF5110) | Domain of unknown function (DUF5110) | - | Family | |
PF01055 | Glycosyl hydrolases family 31 TIM-barrel domain (Glyco_hydro_31_2nd) | Glycosyl hydrolases family 31 TIM-barrel domain | Glycosyl hydrolases are key enzymes of carbohydrate metabolism. Family 31 comprises of enzymes that are, or similar to, alpha- galactosidases. This entry corresponds to the second domain of family 31 enzymes and adopts a TIM-barrel fold. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Alpha-glucosidase | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000322 | Glycoside hydrolase family 31, TIM barrel domain | Domain | |
IPR033403 | Domain of unknown function DUF5110 | Domain | |
IPR048395 | Glycosyl hydrolase family 31, C-terminal domain | Domain | |
IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
IPR051816 | Glycosyl Hydrolase Family 31 | Family | |
IPR013780 | Glycosyl hydrolase, all-beta | Homologous Superfamily | |
IPR025887 | Glycoside hydrolase family 31, N-terminal domain | Domain | |
IPR011013 | Galactose mutarotase-like domain superfamily | Homologous Superfamily |