5VO0 | pdb_00005vo0

Structure of a TRAF6-Ubc13~Ub complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyUBC-like 8034195 3000570 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyUBC-like 8034195 3000570 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Azf-C3HC4e5vo0A1 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: zf-C3HC4ECOD (1.6)
Azf-RAG1_likee5vo0A2 A: few secondary structure elementsX: beta-beta-alpha zinc fingersH: beta-beta-alpha zinc fingers (From Topology)T: beta-beta-alpha zinc fingersF: zf-RAG1_likeECOD (1.6)
Dzf-C3HC4e5vo0D4 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: zf-C3HC4ECOD (1.6)
Dzf-RAG1_likee5vo0D1 A: few secondary structure elementsX: beta-beta-alpha zinc fingersH: beta-beta-alpha zinc fingers (From Topology)T: beta-beta-alpha zinc fingersF: zf-RAG1_likeECOD (1.6)
DSIR2_2nde5vo0D3 A: few secondary structure elementsX: beta-beta-alpha zinc fingersH: beta-beta-alpha zinc fingers (From Topology)T: beta-beta-alpha zinc fingersF: SIR2_2ndECOD (1.6)
DUNK_F_TYPEe5vo0D2 A: few secondary structure elementsX: beta-beta-alpha zinc fingersH: beta-beta-alpha zinc fingers (From Topology)T: beta-beta-alpha zinc fingersF: UNK_F_TYPEECOD (1.6)
BUQ_cone5vo0B1 A: a+b two layersX: UBC-likeH: UBC-like (From Topology)T: UBC-likeF: UQ_conECOD (1.6)
EUQ_cone5vo0E1 A: a+b two layersX: UBC-likeH: UBC-like (From Topology)T: UBC-likeF: UQ_conECOD (1.6)
Cubiquitin_1e5vo0C1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
Fubiquitin_1e5vo0F1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, D
PF00097Zinc finger, C3HC4 type (RING finger) (zf-C3HC4)Zinc finger, C3HC4 type (RING finger)The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid [1]. Many protein ...Domain
A, D
PF02176TRAF-type zinc finger (zf-TRAF)TRAF-type zinc finger- Family
B, E
PF00179Ubiquitin-conjugating enzyme (UQ_con)Ubiquitin-conjugating enzymeProteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ...Domain
C, F
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, D
TNF receptor-associated factor 6
B, E
Ubiquitin-conjugating enzyme E2 N
C, F
Ubiquitin