Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad5kafa_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
DA [auth k]d5kafk_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein K, PsbK automated matches automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
EA [auth l]d5kafl_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein L, PsbL PsbL-like Photosystem II reaction center protein L, PsbL (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
L [auth M]d5kafm1 Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein M, PsbM PsbM-like Photosystem II reaction center protein M, PsbM (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
L [auth M]d5kafm2 Artifacts Tags Tags Tags N-terminal Tags (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
GA [auth o]d5kafo_ Membrane and cell surface proteins and peptides Transmembrane beta-barrels OMPA-like PsbO-like automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
N [auth T]d5kaft1 Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein T, PsbT PsbT-like Photosystem II reaction center protein T, PsbT (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
N [auth T]d5kaft2 Artifacts Tags Tags Tags N-terminal Tags (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
O [auth U]d5kafu_ All alpha proteins SAM domain-like PsbU/PolX domain-like PsbU-like automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
JA [auth v]d5kafv_ All alpha proteins Cytochrome c Cytochrome c automated matches automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
R [auth X]d5kafx_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein X, PsbX PsbX-like automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
S [auth Z]d5kafz_ Membrane and cell surface proteins and peptides Transmembrane helix hairpin PsbZ-like PsbZ-like Photosystem II reaction center protein Z, PsbZ (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Bd5kafb_ Membrane and cell surface proteins and peptides Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Cd5kafc_ Membrane and cell surface proteins and peptides Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Dd5kafd_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Ed5kafe_ Membrane and cell surface proteins and peptides Single transmembrane helix Cytochrome b559 subunits Cytochrome b559 subunits automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Z [auth f]d5kaff_ Membrane and cell surface proteins and peptides Single transmembrane helix Cytochrome b559 subunits Cytochrome b559 subunits automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
G [auth H]d5kafh_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II 10 kDa phosphoprotein PsbH PsbH-like automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
H [auth I]d5kafi1 Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein I, PsbI PsbI-like Photosystem II reaction center protein I, PsbI (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
H [auth I]d5kafi2 Artifacts Tags Tags Tags N-terminal Tags (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
I [auth J]d5kafj_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein J, PsbJ PsbJ-like automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8032741 3000736 SCOP2B (2022-06-29)
U [auth a]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8032741 3000736 SCOP2B (2022-06-29)
DA [auth k]SCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8032757 3001585 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8032757 3001585 SCOP2B (2022-06-29)
EA [auth l]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8032759 3001523 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8032759 3001523 SCOP2B (2022-06-29)
FA [auth m]SCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8032762 3001573 SCOP2B (2022-06-29)
L [auth M]SCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8032762 3001573 SCOP2B (2022-06-29)
GA [auth o]SCOP2B SuperfamilyOMPA barrel-like 8032765 3000208 SCOP2B (2022-06-29)
M [auth O]SCOP2B SuperfamilyOMPA barrel-like 8032765 3000208 SCOP2B (2022-06-29)
HA [auth t]SCOP2B SuperfamilyPhotosystem II reaction center protein T, PsbT 8032769 3001561 SCOP2B (2022-06-29)
N [auth T]SCOP2B SuperfamilyPhotosystem II reaction center protein T, PsbT 8032769 3001561 SCOP2B (2022-06-29)
IA [auth u]SCOP2B SuperfamilyPsbU/PolX domain-like 8032768 3000893 SCOP2B (2022-06-29)
O [auth U]SCOP2B SuperfamilyPsbU/PolX domain-like 8032768 3000893 SCOP2B (2022-06-29)
JA [auth v]SCOP2B SuperfamilyCytochrome c 8036565 3000815 SCOP2B (2022-06-29)
P [auth V]SCOP2B SuperfamilyCytochrome c 8036565 3000815 SCOP2B (2022-06-29)
KA [auth y]SCOP2B SuperfamilyPhotosystem II reaction center protein Ycf12 8093136 3002680 SCOP2B (2022-06-29)
Q [auth Y]SCOP2B SuperfamilyPhotosystem II reaction center protein Ycf12 8093136 3002680 SCOP2B (2022-06-29)
MA [auth z]SCOP2B SuperfamilyPsbZ-like 8032770 3001624 SCOP2B (2022-06-29)
S [auth Z]SCOP2B SuperfamilyPsbZ-like 8032770 3001624 SCOP2B (2022-06-29)
V [auth b]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8032743 3001674 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem II antenna protein-like 8032743 3001674 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPhotosystem II antenna protein-like 8032746 3001674 SCOP2B (2022-06-29)
W [auth c]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8032746 3001674 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8032750 3000736 SCOP2B (2022-06-29)
X [auth d]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8032750 3000736 SCOP2B (2022-06-29)
Y [auth e]SCOP2B SuperfamilyCytochrome b559 subunits 8032749 3001602 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCytochrome b559 subunits 8032749 3001602 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCytochrome b559 subunits 8032752 3001602 SCOP2B (2022-06-29)
Z [auth f]SCOP2B SuperfamilyCytochrome b559 subunits 8032752 3001602 SCOP2B (2022-06-29)
AA [auth h]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8032753 3001547 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8032753 3001547 SCOP2B (2022-06-29)
BA [auth i]SCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8032754 3001590 SCOP2B (2022-06-29)
H [auth I]SCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8032754 3001590 SCOP2B (2022-06-29)
CA [auth j]SCOP2B SuperfamilyPhotosystem II reaction center protein J, PsbJ 8032755 3001534 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilyPhotosystem II reaction center protein J, PsbJ 8032755 3001534 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APhoto_RCe5kafA1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
U [auth a]Photo_RCe5kafa1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
DA [auth k]PsbKe5kafk1 A: extended segmentsX: Photosystem II reaction center protein K, PsbK (From Topology)H: Photosystem II reaction center protein K, PsbK (From Topology)T: Photosystem II reaction center protein K, PsbKF: PsbKECOD (1.6)
J [auth K]PsbKe5kafK1 A: extended segmentsX: Photosystem II reaction center protein K, PsbK (From Topology)H: Photosystem II reaction center protein K, PsbK (From Topology)T: Photosystem II reaction center protein K, PsbKF: PsbKECOD (1.6)
EA [auth l]PsbLe5kafl1 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PsbLECOD (1.6)
K [auth L]PsbLe5kafL1 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PsbLECOD (1.6)
FA [auth m]PsbMe5kafm1 A: extended segmentsX: Photosystem II reaction center protein M, PsbM (From Topology)H: Photosystem II reaction center protein M, PsbM (From Topology)T: Photosystem II reaction center protein M, PsbMF: PsbMECOD (1.6)
L [auth M]PsbMe5kafM1 A: extended segmentsX: Photosystem II reaction center protein M, PsbM (From Topology)H: Photosystem II reaction center protein M, PsbM (From Topology)T: Photosystem II reaction center protein M, PsbMF: PsbMECOD (1.6)
GA [auth o]MSPe5kafo1 A: beta barrelsX: Outer membrane meander beta-barrelsH: OMPA-like (From Topology)T: OMPA-likeF: MSPECOD (1.6)
M [auth O]MSPe5kafO1 A: beta barrelsX: Outer membrane meander beta-barrelsH: OMPA-like (From Topology)T: OMPA-likeF: MSPECOD (1.6)
HA [auth t]PsbTe5kaft1 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PsbTECOD (1.6)
N [auth T]PsbTe5kafT1 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PsbTECOD (1.6)
IA [auth u]PsbUe5kafu1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: PsbUECOD (1.6)
O [auth U]PsbUe5kafU1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: PsbUECOD (1.6)
JA [auth v]Cytochrom_C550e5kafv1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: Cytochrom_C550ECOD (1.6)
P [auth V]Cytochrom_C550e5kafV1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: Cytochrom_C550ECOD (1.6)
KA [auth y]PSII_Ycf12e5kafy1 A: extended segmentsX: Photosystem II reaction center protein ycf12 (From Topology)H: Photosystem II reaction center protein ycf12 (From Topology)T: Photosystem II reaction center protein ycf12F: PSII_Ycf12ECOD (1.6)
Q [auth Y]PSII_Ycf12e5kafY1 A: extended segmentsX: Photosystem II reaction center protein ycf12 (From Topology)H: Photosystem II reaction center protein ycf12 (From Topology)T: Photosystem II reaction center protein ycf12F: PSII_Ycf12ECOD (1.6)
LA [auth x]PsbXe5kafx1 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PsbXECOD (1.6)
R [auth X]PsbXe5kafX1 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PsbXECOD (1.6)
MA [auth z]Ycf9e5kafz1 A: extended segmentsX: PsbZ-like (From Topology)H: PsbZ-like (From Topology)T: PsbZ-likeF: Ycf9ECOD (1.6)
S [auth Z]Ycf9e5kafZ1 A: extended segmentsX: PsbZ-like (From Topology)H: PsbZ-like (From Topology)T: PsbZ-likeF: Ycf9ECOD (1.6)
V [auth b]PSII_1ste5kafb1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
V [auth b]PSII_2nde5kafb2 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PSII_2ndECOD (1.6)
BPSII_1ste5kafB1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
BPSII_2nde5kafB2 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PSII_2ndECOD (1.6)
NA [auth r]PsbYe5kafr1 A: extended segmentsX: Photosystem II protein Y, psbY (From Topology)H: Photosystem II protein Y, psbY (From Topology)T: Photosystem II protein Y, psbYF: PsbYECOD (1.6)
T [auth R]PsbYe5kafR1 A: extended segmentsX: Photosystem II protein Y, psbY (From Topology)H: Photosystem II protein Y, psbY (From Topology)T: Photosystem II protein Y, psbYF: PsbYECOD (1.6)
CPSII_1ste5kafC1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
W [auth c]PSII_1ste5kafc1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
DPhoto_RCe5kafD1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
X [auth d]Photo_RCe5kafd1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
Y [auth e]Cytochrom_B559ae5kafe1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559aECOD (1.6)
ECytochrom_B559ae5kafE1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559aECOD (1.6)
FCytochrom_B559e5kafF1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559ECOD (1.6)
Z [auth f]Cytochrom_B559e5kaff1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559ECOD (1.6)
AA [auth h]PsbHe5kafh1 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PsbHECOD (1.6)
G [auth H]PsbHe5kafH1 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PsbHECOD (1.6)
BA [auth i]PsbIe5kafi1 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PsbIECOD (1.6)
H [auth I]PsbIe5kafI1 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PsbIECOD (1.6)
CA [auth j]PsbJe5kafj1 A: extended segmentsX: Photosystem II reaction center protein J, PsbJ (From Topology)H: Photosystem II reaction center protein J, PsbJ (From Topology)T: Photosystem II reaction center protein J, PsbJF: PsbJECOD (1.6)
I [auth J]PsbJe5kafJ1 A: extended segmentsX: Photosystem II reaction center protein J, PsbJ (From Topology)H: Photosystem II reaction center protein J, PsbJ (From Topology)T: Photosystem II reaction center protein J, PsbJF: PsbJECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
GA [auth o]2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursorCATH (4.3.0)
GA [auth o]3.30.2050.10 Alpha Beta 2-Layer Sandwich photosynthetic oxygen evolving center fold photosynthetic oxygen evolving center domainCATH (4.3.0)
M [auth O]2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursorCATH (4.3.0)
M [auth O]3.30.2050.10 Alpha Beta 2-Layer Sandwich photosynthetic oxygen evolving center fold photosynthetic oxygen evolving center domainCATH (4.3.0)
IA [auth u]1.10.150.320 Mainly Alpha Orthogonal Bundle DNA polymerase domain 1CATH (4.3.0)
O [auth U]1.10.150.320 Mainly Alpha Orthogonal Bundle DNA polymerase domain 1CATH (4.3.0)
JA [auth v]1.10.760.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain D, domain 2CATH (4.3.0)
P [auth V]1.10.760.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain D, domain 2CATH (4.3.0)
MA [auth z]1.10.287.740 Mainly Alpha Orthogonal Bundle Helix Hairpins Photosystem II PsbZ, reaction centreCATH (4.3.0)
S [auth Z]1.10.287.740 Mainly Alpha Orthogonal Bundle Helix Hairpins Photosystem II PsbZ, reaction centreCATH (4.3.0)
V [auth b]3.10.680.10 Alpha Beta Roll Photosystem II CP47 reaction center protein Photosystem II CP47 reaction center proteinCATH (4.3.0)
B3.10.680.10 Alpha Beta Roll Photosystem II CP47 reaction center protein Photosystem II CP47 reaction center proteinCATH (4.3.0)
C1.10.10.670 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A photosystem ii from thermosynechococcus elongatusCATH (4.3.0)
W [auth c]1.10.10.670 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A photosystem ii from thermosynechococcus elongatusCATH (4.3.0)
Y [auth e]1.20.5.860 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II cytochrome b559, alpha subunitCATH (4.3.0)
E1.20.5.860 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II cytochrome b559, alpha subunitCATH (4.3.0)
AA [auth h]1.20.5.880 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II reaction center protein HCATH (4.3.0)
G [auth H]1.20.5.880 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II reaction center protein HCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
U [auth a]
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
EA [auth l],
K [auth L]
PF02419PsbL protein (PsbL)PsbL protein- Family
FA [auth m],
L [auth M]
PF05151Photosystem II reaction centre M protein (PsbM) (PsbM)Photosystem II reaction centre M protein (PsbM)- Family
GA [auth o],
M [auth O]
PF01716Manganese-stabilising protein / photosystem II polypeptide (MSP)Manganese-stabilising protein / photosystem II polypeptide- Family
HA [auth t],
N [auth T]
PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T protein- Family
IA [auth u],
O [auth U]
PF06514Photosystem II 12 kDa extrinsic protein (PsbU) (PsbU)Photosystem II 12 kDa extrinsic protein (PsbU)- Family
JA [auth v],
P [auth V]
PF14495Cytochrome c-550 domain (Cytochrom_C550)Cytochrome c-550 domainThis domain is a heme binding cytochrome known as cytochrome c550, or cytochrome c549, or PsbV [1].Domain
LA [auth x],
R [auth X]
PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
MA [auth z],
S [auth Z]
PF01737YCF9 (Ycf9)YCF9- Family
C,
W [auth c]
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
D,
X [auth d]
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
E,
Y [auth e]
PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
E,
Y [auth e]
PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
AA [auth h],
G [auth H]
PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
BA [auth i],
H [auth I]
PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
U [auth a]
Photosystem II protein D1 1
DA [auth k],
J [auth K]
Photosystem II reaction center protein K-
EA [auth l],
K [auth L]
Photosystem II reaction center protein L-
FA [auth m],
L [auth M]
Photosystem II reaction center protein M-
GA [auth o],
M [auth O]
Photosystem II manganese-stabilizing polypeptide
HA [auth t],
N [auth T]
Photosystem II reaction center protein T-
IA [auth u],
O [auth U]
Photosystem II 12 kDa extrinsic protein-
JA [auth v],
P [auth V]
Cytochrome c-550
KA [auth y],
Q [auth Y]
Photosystem II reaction center protein Ycf12-
LA [auth x],
R [auth X]
Photosystem II reaction center X protein-
MA [auth z],
S [auth Z]
Photosystem II reaction center protein Z-
B,
V [auth b]
Photosystem II CP47 reaction center protein
NA [auth r],
T [auth R]
Photosystem II protein Y
C,
W [auth c]
Photosystem II CP43 reaction center protein
D,
X [auth d]
Photosystem II D2 protein
E,
Y [auth e]
Cytochrome b559 subunit alpha
F,
Z [auth f]
Cytochrome b559 subunit beta
AA [auth h],
G [auth H]
Photosystem II reaction center protein H
BA [auth i],
H [auth I]
Photosystem II reaction center protein I-
CA [auth j],
I [auth J]
Photosystem II reaction center protein J-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
U [auth a]
IPR005867Photosystem II protein D1Family
A,
U [auth a]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A,
U [auth a]
IPR000484Photosynthetic reaction centre, L/MFamily
DA [auth k],
J [auth K]
IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
DA [auth k],
J [auth K]
IPR003687Photosystem II PsbKFamily
EA [auth l],
K [auth L]
IPR003372Photosystem II PsbLFamily
EA [auth l],
K [auth L]
IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
FA [auth m],
L [auth M]
IPR007826Photosystem II PsbMFamily
FA [auth m],
L [auth M]
IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
GA [auth o],
M [auth O]
IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrelHomologous Superfamily
GA [auth o],
M [auth O]
IPR002628Photosystem II extrinsic protein OFamily
HA [auth t],
N [auth T]
IPR001743Photosystem II PsbTFamily
HA [auth t],
N [auth T]
IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
IA [auth u],
O [auth U]
IPR010527Photosystem II PsbU, oxygen evolving complexFamily
JA [auth v],
P [auth V]
IPR017851Photosystem II extrinsic protein V, cytochrome c-550 precursorFamily
JA [auth v],
P [auth V]
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
JA [auth v],
P [auth V]
IPR009056Cytochrome c-like domainDomain
JA [auth v],
P [auth V]
IPR016003Photosystem II extrinsic protein V, cytochrome c-550 precursor-likeFamily
JA [auth v],
P [auth V]
IPR029490Cytochrome c-550 domainDomain
KA [auth y],
Q [auth Y]
IPR010284Photosystem II reaction center protein Ycf12Family
LA [auth x],
R [auth X]
IPR009518Photosystem II PsbXFamily
LA [auth x],
R [auth X]
IPR023431Photosystem II PsbX, type 1 subfamilyFamily
MA [auth z],
S [auth Z]
IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
MA [auth z],
S [auth Z]
IPR002644Photosystem II PsbZ, reaction centreFamily
B,
V [auth b]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
B,
V [auth b]
IPR000932Photosystem antenna protein-likeFamily
B,
V [auth b]
IPR017486Photosystem II CP47 reaction centre proteinFamily
NA [auth r],
T [auth R]
IPR009388Photosystem II PsbYFamily
C,
W [auth c]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
C,
W [auth c]
IPR000932Photosystem antenna protein-likeFamily
C,
W [auth c]
IPR005869Photosystem II CP43 reaction centre proteinFamily
C,
W [auth c]
IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
D,
X [auth d]
IPR005868Photosystem II D2Family
D,
X [auth d]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
D,
X [auth d]
IPR000484Photosynthetic reaction centre, L/MFamily
E,
Y [auth e]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
E,
Y [auth e]
IPR006217Photosystem II cytochrome b559, alpha subunitFamily
E,
Y [auth e]
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
E,
Y [auth e]
IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
E,
Y [auth e]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
F,
Z [auth f]
IPR006241Photosystem II cytochrome b559, beta subunitFamily
F,
Z [auth f]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
F,
Z [auth f]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
AA [auth h],
G [auth H]
IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
AA [auth h],
G [auth H]
IPR001056Photosystem II reaction centre protein HFamily
BA [auth i],
H [auth I]
IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
BA [auth i],
H [auth I]
IPR003686Photosystem II PsbIFamily
CA [auth j],
I [auth J]
IPR002682Photosystem II PsbJFamily
CA [auth j],
I [auth J]
IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
FA [auth m],
L [auth M]
FME Parent Component: MET

RESIDAA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
HA [auth t],
N [auth T]
FME Parent Component: MET

RESIDAA0021 , AA0566 , AA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
BA [auth i],
H [auth I]
FME Parent Component: MET

RESIDAA0021 , AA0566 , AA0021 , AA0566 , AA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891