6A09 | pdb_00006a09

Salmonella Typhi YfdX in the P222 space group

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	YfdX-like	8092293	3002576	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	YfdX-like	8092293	3002576	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	YfdX-like	8092293	3002576	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	YfdX-like	8092293	3002576	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	YfdX-like	8092293	3002576	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	YfdX-like	8092293	3002576	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	YfdX-like	8092293	3002576	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	YfdX-like	8092293	3002576	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	YfdX	e6a09A1	A: alpha bundles	X: uncharacterized putative membrane protein yfdX (From Topology)	H: uncharacterized putative membrane protein yfdX (From Topology)	T: uncharacterized putative membrane protein yfdX	F: YfdX	ECOD (1.6)
B	YfdX	e6a09B1	A: alpha bundles	X: uncharacterized putative membrane protein yfdX (From Topology)	H: uncharacterized putative membrane protein yfdX (From Topology)	T: uncharacterized putative membrane protein yfdX	F: YfdX	ECOD (1.6)
C	YfdX	e6a09C1	A: alpha bundles	X: uncharacterized putative membrane protein yfdX (From Topology)	H: uncharacterized putative membrane protein yfdX (From Topology)	T: uncharacterized putative membrane protein yfdX	F: YfdX	ECOD (1.6)
D	YfdX	e6a09D1	A: alpha bundles	X: uncharacterized putative membrane protein yfdX (From Topology)	H: uncharacterized putative membrane protein yfdX (From Topology)	T: uncharacterized putative membrane protein yfdX	F: YfdX	ECOD (1.6)
E	YfdX	e6a09E1	A: alpha bundles	X: uncharacterized putative membrane protein yfdX (From Topology)	H: uncharacterized putative membrane protein yfdX (From Topology)	T: uncharacterized putative membrane protein yfdX	F: YfdX	ECOD (1.6)
F	YfdX	e6a09F1	A: alpha bundles	X: uncharacterized putative membrane protein yfdX (From Topology)	H: uncharacterized putative membrane protein yfdX (From Topology)	T: uncharacterized putative membrane protein yfdX	F: YfdX	ECOD (1.6)
G	YfdX	e6a09G1	A: alpha bundles	X: uncharacterized putative membrane protein yfdX (From Topology)	H: uncharacterized putative membrane protein yfdX (From Topology)	T: uncharacterized putative membrane protein yfdX	F: YfdX	ECOD (1.6)
H	YfdX	e6a09H1	A: alpha bundles	X: uncharacterized putative membrane protein yfdX (From Topology)	H: uncharacterized putative membrane protein yfdX (From Topology)	T: uncharacterized putative membrane protein yfdX	F: YfdX	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.120.1940	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	YfdX protein domain	CATH (4.3.0)
A	6.10.250.2140	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
B	1.20.120.1940	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	YfdX protein domain	CATH (4.3.0)
B	6.10.250.2140	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
C	1.20.120.1940	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	YfdX protein domain	CATH (4.3.0)
C	6.10.250.2140	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
D	1.20.120.1940	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	YfdX protein domain	CATH (4.3.0)
D	6.10.250.2140	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
E	1.20.120.1940	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	YfdX protein domain	CATH (4.3.0)
E	6.10.250.2140	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
F	1.20.120.1940	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	YfdX protein domain	CATH (4.3.0)
F	6.10.250.2140	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
G	1.20.120.1940	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	YfdX protein domain	CATH (4.3.0)
G	6.10.250.2140	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
H	1.20.120.1940	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	YfdX protein domain	CATH (4.3.0)
H	6.10.250.2140	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF10938	YfdX protein (YfdX)	YfdX protein	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR021236	Uncharacterised protein family YfdX	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.