6GVZ

GII.1 human norovirus protruding domain in complex with glycochenodeoxycholate (GCDCA)

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad6gvza1 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses automated matches automated matches (Norovirus Hu/GII.1/7EK/Hawaii/1971/USA ) [TaxId: 1208060 ], SCOPe (2.08)
Ad6gvza2 Artifacts Tags Tags Tags N-terminal Tags (Norovirus Hu/GII.1/7EK/Hawaii/1971/USA ) [TaxId: 1208060 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACalici_coat_C_Ce6gvzA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Calici_coat_C_CECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.40.510.10 Mainly Beta Beta Barrel Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA virusesCATH (4.3.0)
A2.40.30.120 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF08435Calicivirus coat protein C-terminal (Calici_coat_C)Calicivirus coat protein C-terminal- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Capsid protein VP1- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR029053Viral coat protein subunitHomologous Superfamily
IPR004005Calicivirus coat proteinDomain
IPR013643Calicivirus coat protein C-terminalDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain