6H3N | pdb_00006h3n

Structure of VgrG1 in the Type VI secretion VgrG1-Tse6-EF-Tu complex embedded in lipid nanodiscs


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APhage_GPD_1ste6h3nA5 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_GPD_1stECOD (1.6)
APhage_GPD_4the6h3nA3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_GPD_4thECOD (1.6)
APhage_base_Ve6h3nA6 A: beta barrelsX: OB-foldH: Tail-associated lysozyme gp5-N (From Topology)T: Tail-associated lysozyme gp5-NF: Phage_base_VECOD (1.6)
AVI_Rhs_Vgre6h3nA1 A: beta duplicates or obligate multimersX: Phage tail fiber protein trimerization domain (From Topology)H: Phage tail fiber protein trimerization domain (From Topology)T: Phage tail fiber protein trimerization domainF: VI_Rhs_VgrECOD (1.6)
APhage_GPD_2nde6h3nA4 A: a+b complex topologyX: N0 domain in phage tail proteins and secretins-likeH: N0 domain in phage tail proteins and secretins (From Topology)T: N0 domain in phage tail proteins and secretinsF: Phage_GPD_2ndECOD (1.6)
APhage_GPD_3rde6h3nA2 A: a+b complex topologyX: C-terminal insertion domain in phage tail proteins (From Topology)H: C-terminal insertion domain in phage tail proteins (From Topology)T: C-terminal insertion domain in phage tail proteinsF: Phage_GPD_3rdECOD (1.6)
BPhage_GPD_1ste6h3nB3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_GPD_1stECOD (1.6)
BPhage_GPD_4the6h3nB4 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_GPD_4thECOD (1.6)
BPhage_base_Ve6h3nB6 A: beta barrelsX: OB-foldH: Tail-associated lysozyme gp5-N (From Topology)T: Tail-associated lysozyme gp5-NF: Phage_base_VECOD (1.6)
BVI_Rhs_Vgre6h3nB1 A: beta duplicates or obligate multimersX: Phage tail fiber protein trimerization domain (From Topology)H: Phage tail fiber protein trimerization domain (From Topology)T: Phage tail fiber protein trimerization domainF: VI_Rhs_VgrECOD (1.6)
BPhage_GPD_2nde6h3nB5 A: a+b complex topologyX: N0 domain in phage tail proteins and secretins-likeH: N0 domain in phage tail proteins and secretins (From Topology)T: N0 domain in phage tail proteins and secretinsF: Phage_GPD_2ndECOD (1.6)
BPhage_GPD_3rde6h3nB2 A: a+b complex topologyX: C-terminal insertion domain in phage tail proteins (From Topology)H: C-terminal insertion domain in phage tail proteins (From Topology)T: C-terminal insertion domain in phage tail proteinsF: Phage_GPD_3rdECOD (1.6)
CPhage_GPD_1ste6h3nC4 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_GPD_1stECOD (1.6)
CPhage_GPD_4the6h3nC5 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_GPD_4thECOD (1.6)
CPhage_base_Ve6h3nC6 A: beta barrelsX: OB-foldH: Tail-associated lysozyme gp5-N (From Topology)T: Tail-associated lysozyme gp5-NF: Phage_base_VECOD (1.6)
CVI_Rhs_Vgre6h3nC2 A: beta duplicates or obligate multimersX: Phage tail fiber protein trimerization domain (From Topology)H: Phage tail fiber protein trimerization domain (From Topology)T: Phage tail fiber protein trimerization domainF: VI_Rhs_VgrECOD (1.6)
CPhage_GPD_2nde6h3nC1 A: a+b complex topologyX: N0 domain in phage tail proteins and secretins-likeH: N0 domain in phage tail proteins and secretins (From Topology)T: N0 domain in phage tail proteins and secretinsF: Phage_GPD_2ndECOD (1.6)
CPhage_GPD_3rde6h3nC3 A: a+b complex topologyX: C-terminal insertion domain in phage tail proteins (From Topology)H: C-terminal insertion domain in phage tail proteins (From Topology)T: C-terminal insertion domain in phage tail proteinsF: Phage_GPD_3rdECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF04717Type VI secretion system/phage-baseplate injector OB domain (Phage_base_V)Type VI secretion system/phage-baseplate injector OB domainFamily of bacterial and phage baseplate assembly proteins responsible for forming the small spike at the end of the tail or bacterial pathogenic needle-shaft [1]. This entry represents the OB fold part of the structure. This structure contains an unu ...Domain
A, B, C
PF22178Bacteriophage T4 gp5 C-terminal trimerisation domain (Gp5_trimer_C)Bacteriophage T4 gp5 C-terminal trimerisation domain- Repeat
A, B, C
PF05954Phage tail baseplate hub (GPD) (Phage_GPD)Phage tail baseplate hub (GPD)- Family