6V6S | pdb_00006v6s

Structure of the native human gamma-tubulin ring complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
KSCOP2B SuperfamilyGCP component repeat-like 8090499 3002440 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyGCP component repeat-like 8090497 3002440 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyGCP component repeat-like 8090499 3002440 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyGCP component repeat-like 8090497 3002440 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASpc97_Spc98e6v6sA1 A: alpha complex topologyX: gamma-tubulin complex protein 4 (GCP4) (From Topology)H: gamma-tubulin complex protein 4 (GCP4) (From Topology)T: gamma-tubulin complex protein 4 (GCP4)F: Spc97_Spc98ECOD (1.6)
CSpc97_Spc98e6v6sC1 A: alpha complex topologyX: gamma-tubulin complex protein 4 (GCP4) (From Topology)H: gamma-tubulin complex protein 4 (GCP4) (From Topology)T: gamma-tubulin complex protein 4 (GCP4)F: Spc97_Spc98ECOD (1.6)
ESpc97_Spc98e6v6sE1 A: alpha complex topologyX: gamma-tubulin complex protein 4 (GCP4) (From Topology)H: gamma-tubulin complex protein 4 (GCP4) (From Topology)T: gamma-tubulin complex protein 4 (GCP4)F: Spc97_Spc98ECOD (1.6)
GSpc97_Spc98e6v6sG1 A: alpha complex topologyX: gamma-tubulin complex protein 4 (GCP4) (From Topology)H: gamma-tubulin complex protein 4 (GCP4) (From Topology)T: gamma-tubulin complex protein 4 (GCP4)F: Spc97_Spc98ECOD (1.6)
MSpc97_Spc98e6v6sM1 A: alpha complex topologyX: gamma-tubulin complex protein 4 (GCP4) (From Topology)H: gamma-tubulin complex protein 4 (GCP4) (From Topology)T: gamma-tubulin complex protein 4 (GCP4)F: Spc97_Spc98ECOD (1.6)
LSpc97_Spc98e6v6sL1 A: alpha complex topologyX: gamma-tubulin complex protein 4 (GCP4) (From Topology)H: gamma-tubulin complex protein 4 (GCP4) (From Topology)T: gamma-tubulin complex protein 4 (GCP4)F: Spc97_Spc98ECOD (1.6)
T [auth U]Actin_1ste6v6sU2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
T [auth U]Actin_2nde6v6sU1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
AA [auth c]Tubulin_Ce6v6sc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: Tubulin_CECOD (1.6)
AA [auth c]Tubuline6v6sc2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: TubulinECOD (1.6)
BA [auth d]Tubulin_Ce6v6sd1 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: Tubulin_CECOD (1.6)
BA [auth d]Tubuline6v6sd2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: TubulinECOD (1.6)
DA [auth f]Tubulin_Ce6v6sf1 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: Tubulin_CECOD (1.6)
DA [auth f]Tubuline6v6sf2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: TubulinECOD (1.6)
EA [auth g]Tubulin_Ce6v6sg1 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: Tubulin_CECOD (1.6)
EA [auth g]Tubuline6v6sg2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: TubulinECOD (1.6)
FA [auth h]Tubulin_Ce6v6sh2 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: Tubulin_CECOD (1.6)
FA [auth h]Tubuline6v6sh1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: TubulinECOD (1.6)
HA [auth j]Tubulin_Ce6v6sj1 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: Tubulin_CECOD (1.6)
HA [auth j]Tubuline6v6sj2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: TubulinECOD (1.6)
IA [auth k]Tubulin_Ce6v6sk1 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: Tubulin_CECOD (1.6)
IA [auth k]Tubuline6v6sk2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: TubulinECOD (1.6)
LA [auth t]Tubulin_Ce6v6st2 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: Tubulin_CECOD (1.6)
LA [auth t]Tubuline6v6st1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: TubulinECOD (1.6)
Y [auth a]Tubulin_Ce6v6sa2 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: Tubulin_CECOD (1.6)
Y [auth a]Tubuline6v6sa1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: TubulinECOD (1.6)
Z [auth b]Tubulin_Ce6v6sb2 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: Tubulin_CECOD (1.6)
Z [auth b]Tubuline6v6sb1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: TubulinECOD (1.6)
CA [auth e]Tubulin_Ce6v6se1 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: Tubulin_CECOD (1.6)
CA [auth e]Tubuline6v6se2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: TubulinECOD (1.6)
GA [auth i]Tubulin_Ce6v6si2 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: Tubulin_CECOD (1.6)
GA [auth i]Tubuline6v6si1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: TubulinECOD (1.6)
JA [auth l]Tubulin_Ce6v6sl1 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: Tubulin_CECOD (1.6)
JA [auth l]Tubuline6v6sl2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: TubulinECOD (1.6)
KA [auth m]Tubulin_Ce6v6sm2 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: Tubulin_CECOD (1.6)
KA [auth m]Tubuline6v6sm1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: TubulinECOD (1.6)
BSpc97_Spc98e6v6sB1 A: alpha complex topologyX: gamma-tubulin complex protein 4 (GCP4) (From Topology)H: gamma-tubulin complex protein 4 (GCP4) (From Topology)T: gamma-tubulin complex protein 4 (GCP4)F: Spc97_Spc98ECOD (1.6)
DSpc97_Spc98e6v6sD1 A: alpha complex topologyX: gamma-tubulin complex protein 4 (GCP4) (From Topology)H: gamma-tubulin complex protein 4 (GCP4) (From Topology)T: gamma-tubulin complex protein 4 (GCP4)F: Spc97_Spc98ECOD (1.6)
FSpc97_Spc98e6v6sF1 A: alpha complex topologyX: gamma-tubulin complex protein 4 (GCP4) (From Topology)H: gamma-tubulin complex protein 4 (GCP4) (From Topology)T: gamma-tubulin complex protein 4 (GCP4)F: Spc97_Spc98ECOD (1.6)
HSpc97_Spc98e6v6sH1 A: alpha complex topologyX: gamma-tubulin complex protein 4 (GCP4) (From Topology)H: gamma-tubulin complex protein 4 (GCP4) (From Topology)T: gamma-tubulin complex protein 4 (GCP4)F: Spc97_Spc98ECOD (1.6)
S [auth T]Spc97_Spc98e6v6sT1 A: alpha complex topologyX: gamma-tubulin complex protein 4 (GCP4) (From Topology)H: gamma-tubulin complex protein 4 (GCP4) (From Topology)T: gamma-tubulin complex protein 4 (GCP4)F: Spc97_Spc98ECOD (1.6)
KSpc97_Spc98e6v6sK1 A: alpha complex topologyX: gamma-tubulin complex protein 4 (GCP4) (From Topology)H: gamma-tubulin complex protein 4 (GCP4) (From Topology)T: gamma-tubulin complex protein 4 (GCP4)F: Spc97_Spc98ECOD (1.6)
ISpc97_Spc98e6v6sI1 A: alpha complex topologyX: gamma-tubulin complex protein 4 (GCP4) (From Topology)H: gamma-tubulin complex protein 4 (GCP4) (From Topology)T: gamma-tubulin complex protein 4 (GCP4)F: Spc97_Spc98ECOD (1.6)
JSpc97_Spc98e6v6sJ1 A: alpha complex topologyX: gamma-tubulin complex protein 4 (GCP4) (From Topology)H: gamma-tubulin complex protein 4 (GCP4) (From Topology)T: gamma-tubulin complex protein 4 (GCP4)F: Spc97_Spc98ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C, E, G, M
PF17681Gamma tubulin complex component N-terminal (GCP_N_terminal)Gamma tubulin complex component N-terminalThis is the N-terminal domain found in components of the gamma-tubulin complex proteins (GCPs). Family members include spindle pole body (SBP) components such as Spc97 and Spc98 which function as the microtubule-organizing center in yeast [1]. Furthe ...Domain
A, C, E, G, M
PF00091Tubulin/FtsZ family, GTPase domain (Tubulin)Tubulin/FtsZ family, GTPase domainThis family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...Domain
A, C, E, G, M
PF04130Gamma tubulin complex component C-terminal (GCP_C_terminal)Gamma tubulin complex component C-terminalThis is the C-terminal domain found in components of the gamma-tubulin complex proteins (GCPs). Family members include spindle pole body (SBP) components such as Spc97 and Spc98 which function as the microtubule-organizing center in yeast [1]. Furthe ...Domain
A, C, E, G, M
PF03953Tubulin C-terminal domain (Tubulin_C)Tubulin C-terminal domainThis family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...Domain
PF17681Gamma tubulin complex component N-terminal (GCP_N_terminal)Gamma tubulin complex component N-terminalThis is the N-terminal domain found in components of the gamma-tubulin complex proteins (GCPs). Family members include spindle pole body (SBP) components such as Spc97 and Spc98 which function as the microtubule-organizing center in yeast [1]. Furthe ...Domain
PF00091Tubulin/FtsZ family, GTPase domain (Tubulin)Tubulin/FtsZ family, GTPase domainThis family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...Domain
PF04130Gamma tubulin complex component C-terminal (GCP_C_terminal)Gamma tubulin complex component C-terminalThis is the C-terminal domain found in components of the gamma-tubulin complex proteins (GCPs). Family members include spindle pole body (SBP) components such as Spc97 and Spc98 which function as the microtubule-organizing center in yeast [1]. Furthe ...Domain
PF03953Tubulin C-terminal domain (Tubulin_C)Tubulin C-terminal domainThis family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...Domain
B,
D,
F,
H,
S [auth T]
PF17681Gamma tubulin complex component N-terminal (GCP_N_terminal)Gamma tubulin complex component N-terminalThis is the N-terminal domain found in components of the gamma-tubulin complex proteins (GCPs). Family members include spindle pole body (SBP) components such as Spc97 and Spc98 which function as the microtubule-organizing center in yeast [1]. Furthe ...Domain
B,
D,
F,
H,
S [auth T]
PF00091Tubulin/FtsZ family, GTPase domain (Tubulin)Tubulin/FtsZ family, GTPase domainThis family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...Domain
B,
D,
F,
H,
S [auth T]
PF04130Gamma tubulin complex component C-terminal (GCP_C_terminal)Gamma tubulin complex component C-terminalThis is the C-terminal domain found in components of the gamma-tubulin complex proteins (GCPs). Family members include spindle pole body (SBP) components such as Spc97 and Spc98 which function as the microtubule-organizing center in yeast [1]. Furthe ...Domain
B,
D,
F,
H,
S [auth T]
PF03953Tubulin C-terminal domain (Tubulin_C)Tubulin C-terminal domainThis family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...Domain
I, K
PF17681Gamma tubulin complex component N-terminal (GCP_N_terminal)Gamma tubulin complex component N-terminalThis is the N-terminal domain found in components of the gamma-tubulin complex proteins (GCPs). Family members include spindle pole body (SBP) components such as Spc97 and Spc98 which function as the microtubule-organizing center in yeast [1]. Furthe ...Domain
I, K
PF00091Tubulin/FtsZ family, GTPase domain (Tubulin)Tubulin/FtsZ family, GTPase domainThis family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...Domain
I, K
PF04130Gamma tubulin complex component C-terminal (GCP_C_terminal)Gamma tubulin complex component C-terminalThis is the C-terminal domain found in components of the gamma-tubulin complex proteins (GCPs). Family members include spindle pole body (SBP) components such as Spc97 and Spc98 which function as the microtubule-organizing center in yeast [1]. Furthe ...Domain
I, K
PF03953Tubulin C-terminal domain (Tubulin_C)Tubulin C-terminal domainThis family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...Domain
PF17681Gamma tubulin complex component N-terminal (GCP_N_terminal)Gamma tubulin complex component N-terminalThis is the N-terminal domain found in components of the gamma-tubulin complex proteins (GCPs). Family members include spindle pole body (SBP) components such as Spc97 and Spc98 which function as the microtubule-organizing center in yeast [1]. Furthe ...Domain
PF00091Tubulin/FtsZ family, GTPase domain (Tubulin)Tubulin/FtsZ family, GTPase domainThis family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...Domain
PF04130Gamma tubulin complex component C-terminal (GCP_C_terminal)Gamma tubulin complex component C-terminalThis is the C-terminal domain found in components of the gamma-tubulin complex proteins (GCPs). Family members include spindle pole body (SBP) components such as Spc97 and Spc98 which function as the microtubule-organizing center in yeast [1]. Furthe ...Domain
PF03953Tubulin C-terminal domain (Tubulin_C)Tubulin C-terminal domainThis family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C, E, G, M
Gamma-tubulin complex component 2
Gamma-tubulin complex component 6
T [auth U]beta actin---
U [auth V],
X [auth Y]
Unassigned poly-alanine model ("CC")---
W [auth X]Unassigned poly-alanine model ("Lumenal bridge helical bundles")---
Tubulin gamma-1 chain
B,
D,
F,
H,
S [auth T]
Gamma-tubulin complex component 3
I, K
Gamma-tubulin complex component 4
Gamma-tubulin complex component 5
N,
O,
P [auth Q],
Q [auth R],
R [auth S]
Unassigned poly-alanine chain ("staple")---
V [auth W]Unassigned poly-alanine model ("HB")---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, C, E, G, M
IPR040457Gamma tubulin complex component, C-terminalDomain
A, C, E, G, M
IPR042241Gamma-tubulin complex component, C-terminal domain superfamilyHomologous Superfamily
A, C, E, G, M
IPR007259Gamma-tubulin complex component proteinFamily
A, C, E, G, M
IPR041470Gamma tubulin complex component protein, N-terminalDomain
IPR040457Gamma tubulin complex component, C-terminalDomain
IPR045818Gamma-tubulin complex component 6, N-terminalDomain
IPR042241Gamma-tubulin complex component, C-terminal domain superfamilyHomologous Superfamily
IPR007259Gamma-tubulin complex component proteinFamily
IPR041470Gamma tubulin complex component protein, N-terminalDomain
IPR008280Tubulin/FtsZ, C-terminalHomologous Superfamily
IPR002454Gamma tubulinFamily
IPR017975Tubulin, conserved siteConserved Site
IPR023123Tubulin, C-terminalHomologous Superfamily
IPR018316Tubulin/FtsZ, 2-layer sandwich domainDomain
IPR003008Tubulin/FtsZ, GTPase domainDomain
IPR037103Tubulin/FtsZ-like, C-terminal domainHomologous Superfamily
IPR000217TubulinFamily
IPR036525Tubulin/FtsZ, GTPase domain superfamilyHomologous Superfamily
B,
D,
F,
H,
S [auth T]
IPR040457Gamma tubulin complex component, C-terminalDomain
B,
D,
F,
H,
S [auth T]
IPR042241Gamma-tubulin complex component, C-terminal domain superfamilyHomologous Superfamily
B,
D,
F,
H,
S [auth T]
IPR007259Gamma-tubulin complex component proteinFamily
B,
D,
F,
H,
S [auth T]
IPR041470Gamma tubulin complex component protein, N-terminalDomain
I, K
IPR040457Gamma tubulin complex component, C-terminalDomain
I, K
IPR042241Gamma-tubulin complex component, C-terminal domain superfamilyHomologous Superfamily
I, K
IPR007259Gamma-tubulin complex component proteinFamily
I, K
IPR041470Gamma tubulin complex component protein, N-terminalDomain
IPR040457Gamma tubulin complex component, C-terminalDomain
IPR042241Gamma-tubulin complex component, C-terminal domain superfamilyHomologous Superfamily
IPR007259Gamma-tubulin complex component proteinFamily
IPR041470Gamma tubulin complex component protein, N-terminalDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, C, E, G, M
PharosQ9BSJ2
PharosQ96RT7
PharosP23258
B,
D,
F,
H,
S [auth T]
PharosQ96CW5
I, K
PharosQ9UGJ1
PharosQ96RT8