8TUX | pdb_00008tux

Capsid of mature PP7 virion with 3'end region of PP7 genomic RNA

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth m], C [auth M]	PF03863	Phage maturation protein (Phage_mat-A)	Phage maturation protein	-	Family
AA [auth x1], AB [auth X1], AC [auth P2], AD [auth p2], AE [auth 2f], AA [auth x1], AB [auth X1], AC [auth P2], AD [auth p2], AE [auth 2f], AF [auth 2F], BA [auth y1], BB [auth Y1], BC [auth Q2], BD [auth q2], BE [auth 2g], BF [auth 2G], CA [auth z1], CB [auth Z1], CC [auth R2], CD [auth r2], CE [auth 2h], CF [auth 2H], D [auth a1], DA [auth A1], DB [auth 01], DC [auth S2], DD [auth s2], DE [auth 2i], DF [auth 2I], E [auth b1], EA [auth B1], EB [auth 11], EC [auth T2], ED [auth t2], EE [auth 2j], EF [auth 2J], F [auth c1], FA [auth C1], FB [auth 21], FC [auth U2], FD [auth u2], FE [auth 2k], FF [auth 2K], G [auth d1], GA [auth D1], GB [auth 31], GC [auth V2], GD [auth v2], GE [auth 2l], GF [auth 2L], H [auth e1], HA [auth E1], HB [auth 41], HC [auth W2], HD [auth w2], HE [auth 2m], HF [auth 2M], I [auth f1], IA [auth F1], IB [auth 51], IC [auth X2], ID [auth x2], IE [auth 2n], IF [auth 2N], J [auth g1], JA [auth G1], JB [auth 61], JC [auth Y2], JD [auth y2], JE [auth 2o], JF [auth 2O], K [auth h1], KA [auth H1], KB [auth 71], KC [auth Z2], KD [auth z2], KE [auth 2p], KF [auth 2P], L [auth i1], LA [auth I1], LB [auth A2], LC [auth a2], LD [auth 02], LE [auth 2q], LF [auth 2Q], M [auth j1], MA [auth J1], MB [auth B2], MC [auth b2], MD [auth 12], ME [auth 2r], MF [auth 2R], N [auth k1], NA [auth K1], NB [auth C2], NC [auth c2], ND [auth 22], NE [auth 2s], NF [auth 2S], O [auth l1], OA [auth L1], OB [auth D2], OC [auth d2], OD [auth 32], OE [auth 2t], OF [auth 2T], P [auth m1], PA [auth M1], PB [auth E2], PC [auth e2], PD [auth 42], PE [auth 2u], PF [auth 2U], Q [auth n1], QA [auth N1], QB [auth F2], QC [auth f2], QD [auth 52], QE [auth 2v], QF [auth 2V], R [auth o1], RA [auth O1], RB [auth G2], RC [auth g2], RD [auth 62], RE [auth 2w], RF [auth 2W], S [auth p1], SA [auth P1], SB [auth H2], SC [auth h2], SD [auth 72], SE [auth 2x], SF [auth 2X], T [auth q1], TA [auth Q1], TB [auth I2], TC [auth i2], TD [auth 82], TE [auth 2y], TF [auth 2Y], U [auth r1], UA [auth R1], UB [auth J2], UC [auth j2], UD [auth 92], UE [auth 2z], UF [auth 2Z], V [auth s1], VA [auth S1], VB [auth K2], VC [auth k2], VD [auth 2a], VE [auth 2A], VF [auth aa], W [auth t1], WA [auth T1], WB [auth L2], WC [auth l2], WD [auth 2b], WE [auth 2B], WF [auth ab], X [auth u1], XA [auth U1], XB [auth M2], XC [auth m2], XD [auth 2c], XE [auth 2C], XF [auth ac], Y [auth v1], YA [auth V1], YB [auth N2], YC [auth n2], YD [auth 2d], YE [auth 2D], YF [auth ad], Z [auth w1], ZA [auth W1], ZB [auth O2], ZC [auth o2], ZD [auth 2e], ZE [auth 2E]	PF09063	Phage PP7 coat protein (Phage_coat)	Phage PP7 coat protein	Members of this family form the capsid of P. aeruginosa phage PP7. They adopt a secondary structure consisting of a six stranded beta sheet and an alpha helix [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth R]	3'end of PP7 genomic RNA	-	-	-
B [auth m], C [auth M]	Maturation protein A	-	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction virion attachment to host cell pilus symbiont entry into host cell viral process symbiont entry into host	virion component
AA [auth x1], AB [auth X1], AC [auth P2], AD [auth p2], AE [auth 2f], AA [auth x1], AB [auth X1], AC [auth P2], AD [auth p2], AE [auth 2f], AF [auth 2F], BA [auth y1], BB [auth Y1], BC [auth Q2], BD [auth q2], BE [auth 2g], BF [auth 2G], CA [auth z1], CB [auth Z1], CC [auth R2], CD [auth r2], CE [auth 2h], CF [auth 2H], D [auth a1], DA [auth A1], DB [auth 01], DC [auth S2], DD [auth s2], DE [auth 2i], DF [auth 2I], E [auth b1], EA [auth B1], EB [auth 11], EC [auth T2], ED [auth t2], EE [auth 2j], EF [auth 2J], F [auth c1], FA [auth C1], FB [auth 21], FC [auth U2], FD [auth u2], FE [auth 2k], FF [auth 2K], G [auth d1], GA [auth D1], GB [auth 31], GC [auth V2], GD [auth v2], GE [auth 2l], GF [auth 2L], H [auth e1], HA [auth E1], HB [auth 41], HC [auth W2], HD [auth w2], HE [auth 2m], HF [auth 2M], I [auth f1], IA [auth F1], IB [auth 51], IC [auth X2], ID [auth x2], IE [auth 2n], IF [auth 2N], J [auth g1], JA [auth G1], JB [auth 61], JC [auth Y2], JD [auth y2], JE [auth 2o], JF [auth 2O], K [auth h1], KA [auth H1], KB [auth 71], KC [auth Z2], KD [auth z2], KE [auth 2p], KF [auth 2P], L [auth i1], LA [auth I1], LB [auth A2], LC [auth a2], LD [auth 02], LE [auth 2q], LF [auth 2Q], M [auth j1], MA [auth J1], MB [auth B2], MC [auth b2], MD [auth 12], ME [auth 2r], MF [auth 2R], N [auth k1], NA [auth K1], NB [auth C2], NC [auth c2], ND [auth 22], NE [auth 2s], NF [auth 2S], O [auth l1], OA [auth L1], OB [auth D2], OC [auth d2], OD [auth 32], OE [auth 2t], OF [auth 2T], P [auth m1], PA [auth M1], PB [auth E2], PC [auth e2], PD [auth 42], PE [auth 2u], PF [auth 2U], Q [auth n1], QA [auth N1], QB [auth F2], QC [auth f2], QD [auth 52], QE [auth 2v], QF [auth 2V], R [auth o1], RA [auth O1], RB [auth G2], RC [auth g2], RD [auth 62], RE [auth 2w], RF [auth 2W], S [auth p1], SA [auth P1], SB [auth H2], SC [auth h2], SD [auth 72], SE [auth 2x], SF [auth 2X], T [auth q1], TA [auth Q1], TB [auth I2], TC [auth i2], TD [auth 82], TE [auth 2y], TF [auth 2Y], U [auth r1], UA [auth R1], UB [auth J2], UC [auth j2], UD [auth 92], UE [auth 2z], UF [auth 2Z], V [auth s1], VA [auth S1], VB [auth K2], VC [auth k2], VD [auth 2a], VE [auth 2A], VF [auth aa], W [auth t1], WA [auth T1], WB [auth L2], WC [auth l2], WD [auth 2b], WE [auth 2B], WF [auth ab], X [auth u1], XA [auth U1], XB [auth M2], XC [auth m2], XD [auth 2c], XE [auth 2C], XF [auth ac], Y [auth v1], YA [auth V1], YB [auth N2], YC [auth n2], YD [auth 2d], YE [auth 2D], YF [auth ad], Z [auth w1], ZA [auth W1], ZB [auth O2], ZC [auth o2], ZD [auth 2e], ZE [auth 2E]	Capsid protein	RNA binding binding nucleic acid binding identical protein binding protein binding	regulation of biosynthetic process regulation of biological process regulation of cellular process regulation of protein metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression regulation of gene expression biosynthetic process regulation of translation regulation of biosynthetic process regulation of biological process regulation of cellular process regulation of protein metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression regulation of gene expression biosynthetic process regulation of translation regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process regulation of metabolic process	viral capsid T=3 icosahedral viral capsid icosahedral viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth m], C [auth M]	IPR005563	Assembly protein	Family
AA [auth x1], AB [auth X1], AC [auth P2], AD [auth p2], AE [auth 2f], AA [auth x1], AB [auth X1], AC [auth P2], AD [auth p2], AE [auth 2f], AF [auth 2F], BA [auth y1], BB [auth Y1], BC [auth Q2], BD [auth q2], BE [auth 2g], BF [auth 2G], CA [auth z1], CB [auth Z1], CC [auth R2], CD [auth r2], CE [auth 2h], CF [auth 2H], D [auth a1], DA [auth A1], DB [auth 01], DC [auth S2], DD [auth s2], DE [auth 2i], DF [auth 2I], E [auth b1], EA [auth B1], EB [auth 11], EC [auth T2], ED [auth t2], EE [auth 2j], EF [auth 2J], F [auth c1], FA [auth C1], FB [auth 21], FC [auth U2], FD [auth u2], FE [auth 2k], FF [auth 2K], G [auth d1], GA [auth D1], GB [auth 31], GC [auth V2], GD [auth v2], GE [auth 2l], GF [auth 2L], H [auth e1], HA [auth E1], HB [auth 41], HC [auth W2], HD [auth w2], HE [auth 2m], HF [auth 2M], I [auth f1], IA [auth F1], IB [auth 51], IC [auth X2], ID [auth x2], IE [auth 2n], IF [auth 2N], J [auth g1], JA [auth G1], JB [auth 61], JC [auth Y2], JD [auth y2], JE [auth 2o], JF [auth 2O], K [auth h1], KA [auth H1], KB [auth 71], KC [auth Z2], KD [auth z2], KE [auth 2p], KF [auth 2P], L [auth i1], LA [auth I1], LB [auth A2], LC [auth a2], LD [auth 02], LE [auth 2q], LF [auth 2Q], M [auth j1], MA [auth J1], MB [auth B2], MC [auth b2], MD [auth 12], ME [auth 2r], MF [auth 2R], N [auth k1], NA [auth K1], NB [auth C2], NC [auth c2], ND [auth 22], NE [auth 2s], NF [auth 2S], O [auth l1], OA [auth L1], OB [auth D2], OC [auth d2], OD [auth 32], OE [auth 2t], OF [auth 2T], P [auth m1], PA [auth M1], PB [auth E2], PC [auth e2], PD [auth 42], PE [auth 2u], PF [auth 2U], Q [auth n1], QA [auth N1], QB [auth F2], QC [auth f2], QD [auth 52], QE [auth 2v], QF [auth 2V], R [auth o1], RA [auth O1], RB [auth G2], RC [auth g2], RD [auth 62], RE [auth 2w], RF [auth 2W], S [auth p1], SA [auth P1], SB [auth H2], SC [auth h2], SD [auth 72], SE [auth 2x], SF [auth 2X], T [auth q1], TA [auth Q1], TB [auth I2], TC [auth i2], TD [auth 82], TE [auth 2y], TF [auth 2Y], U [auth r1], UA [auth R1], UB [auth J2], UC [auth j2], UD [auth 92], UE [auth 2z], UF [auth 2Z], V [auth s1], VA [auth S1], VB [auth K2], VC [auth k2], VD [auth 2a], VE [auth 2A], VF [auth aa], W [auth t1], WA [auth T1], WB [auth L2], WC [auth l2], WD [auth 2b], WE [auth 2B], WF [auth ab], X [auth u1], XA [auth U1], XB [auth M2], XC [auth m2], XD [auth 2c], XE [auth 2C], XF [auth ac], Y [auth v1], YA [auth V1], YB [auth N2], YC [auth n2], YD [auth 2d], YE [auth 2D], YF [auth ad], Z [auth w1], ZA [auth W1], ZB [auth O2], ZC [auth o2], ZD [auth 2e], ZE [auth 2E]	IPR015954	Bacteriophage RNA-type, capsid	Homologous Superfamily
AA [auth x1], AB [auth X1], AC [auth P2], AD [auth p2], AE [auth 2f], AA [auth x1], AB [auth X1], AC [auth P2], AD [auth p2], AE [auth 2f], AF [auth 2F], BA [auth y1], BB [auth Y1], BC [auth Q2], BD [auth q2], BE [auth 2g], BF [auth 2G], CA [auth z1], CB [auth Z1], CC [auth R2], CD [auth r2], CE [auth 2h], CF [auth 2H], D [auth a1], DA [auth A1], DB [auth 01], DC [auth S2], DD [auth s2], DE [auth 2i], DF [auth 2I], E [auth b1], EA [auth B1], EB [auth 11], EC [auth T2], ED [auth t2], EE [auth 2j], EF [auth 2J], F [auth c1], FA [auth C1], FB [auth 21], FC [auth U2], FD [auth u2], FE [auth 2k], FF [auth 2K], G [auth d1], GA [auth D1], GB [auth 31], GC [auth V2], GD [auth v2], GE [auth 2l], GF [auth 2L], H [auth e1], HA [auth E1], HB [auth 41], HC [auth W2], HD [auth w2], HE [auth 2m], HF [auth 2M], I [auth f1], IA [auth F1], IB [auth 51], IC [auth X2], ID [auth x2], IE [auth 2n], IF [auth 2N], J [auth g1], JA [auth G1], JB [auth 61], JC [auth Y2], JD [auth y2], JE [auth 2o], JF [auth 2O], K [auth h1], KA [auth H1], KB [auth 71], KC [auth Z2], KD [auth z2], KE [auth 2p], KF [auth 2P], L [auth i1], LA [auth I1], LB [auth A2], LC [auth a2], LD [auth 02], LE [auth 2q], LF [auth 2Q], M [auth j1], MA [auth J1], MB [auth B2], MC [auth b2], MD [auth 12], ME [auth 2r], MF [auth 2R], N [auth k1], NA [auth K1], NB [auth C2], NC [auth c2], ND [auth 22], NE [auth 2s], NF [auth 2S], O [auth l1], OA [auth L1], OB [auth D2], OC [auth d2], OD [auth 32], OE [auth 2t], OF [auth 2T], P [auth m1], PA [auth M1], PB [auth E2], PC [auth e2], PD [auth 42], PE [auth 2u], PF [auth 2U], Q [auth n1], QA [auth N1], QB [auth F2], QC [auth f2], QD [auth 52], QE [auth 2v], QF [auth 2V], R [auth o1], RA [auth O1], RB [auth G2], RC [auth g2], RD [auth 62], RE [auth 2w], RF [auth 2W], S [auth p1], SA [auth P1], SB [auth H2], SC [auth h2], SD [auth 72], SE [auth 2x], SF [auth 2X], T [auth q1], TA [auth Q1], TB [auth I2], TC [auth i2], TD [auth 82], TE [auth 2y], TF [auth 2Y], U [auth r1], UA [auth R1], UB [auth J2], UC [auth j2], UD [auth 92], UE [auth 2z], UF [auth 2Z], V [auth s1], VA [auth S1], VB [auth K2], VC [auth k2], VD [auth 2a], VE [auth 2A], VF [auth aa], W [auth t1], WA [auth T1], WB [auth L2], WC [auth l2], WD [auth 2b], WE [auth 2B], WF [auth ab], X [auth u1], XA [auth U1], XB [auth M2], XC [auth m2], XD [auth 2c], XE [auth 2C], XF [auth ac], Y [auth v1], YA [auth V1], YB [auth N2], YC [auth n2], YD [auth 2d], YE [auth 2D], YF [auth ad], Z [auth w1], ZA [auth W1], ZB [auth O2], ZC [auth o2], ZD [auth 2e], ZE [auth 2E]	IPR015148	Bacteriophage PP7 capsid	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.