SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1-3 mM [U-15N] protein, 0.010 mM DSS | 90% H2O/10% D2O | 0 | 5.1 | ambient | 303 | |
2 | 2D 1H-1H TOCSY | 1-3 mM protein, 0.010 mM DSS | 90% H2O/10% D2O | 0 | 5.1 | ambient | 303 | |
3 | 2D DQF-COSY | 1-3 mM protein, 0.010 mM DSS | 90% H2O/10% D2O | 0 | 5.1 | ambient | 303 | |
4 | 2D 1H-1H NOESY | 1-3 mM protein, 0.010 mM DSS | 90% H2O/10% D2O | 0 | 5.1 | ambient | 303 | |
5 | 3D 1H-15N NOESY | 1-3 mM [U-15N] protein, 0.010 mM DSS | 90% H2O/10% D2O | 0 | 5.1 | ambient | 303 | |
6 | 3D 1H-15N TOCSY | 1-3 mM [U-15N] protein, 0.010 mM DSS | 90% H2O/10% D2O | 0 | 5.1 | ambient | 303 | |
7 | 3D HNHA | 1-3 mM [U-15N] protein, 0.010 mM DSS | 90% H2O/10% D2O | 0 | 5.1 | ambient | 303 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
2 | JEOL | ECA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
DGSA-distance geometry simulated annealing | Sparky |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (minimized average structure) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | Sparky | Goddard | |
2 | data analysis | MOLMOL | Koradi, Billeter and Wuthrich | |
3 | structure solution | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
4 | data analysis | ProcheckNMR | Laskowski and MacArthur | |
5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
6 | data analysis | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
7 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read |