Ligand validation:3P9K


SAH: S-ADENOSYL-L-HOMOCYSTEINE

SAH is a Ligand Of Interest in 3P9K designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3P9K_SAH_A_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3P9K_SAH_A_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3P9K_SAH_A_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
3P9K_SAH_A_401 77% 39% 0.107 0.9460.96 1.42 2 200100%1
3P9K_SAH_D_404 75% 37% 0.108 0.941.01 1.46 2 200100%1
3P9K_SAH_B_402 65% 35% 0.126 0.9291.08 1.49 2 210100%1
3P9K_SAH_C_403 65% 38% 0.129 0.931.02 1.4 2 210100%1
3P9I_SAH_A_401 94% 37% 0.069 0.9660.98 1.47 2 300100%1
3P9C_SAH_A_401 82% 40% 0.085 0.9390.91 1.4 2 100100%1
2OB2_SAH_A_1801 100% 22% 0.023 0.9941.25 1.94 3 400100%1
2BB3_SAH_B_203 100% 9% 0.027 0.9932.32 2.18 9 640100%1
3LGA_SAH_B_301 100% 22% 0.027 0.9941.32 1.89 2 300100%1
4QPP_SAH_A_1000 100% 37% 0.025 0.9950.99 1.46 2 400100%1
8QXQ_SAH_A_401 100% 51% 0.028 0.9940.84 1.04 1 200100%1