Ligand validation:4O4D


ATP: ADENOSINE-5'-TRIPHOSPHATE

ATP is a Ligand Of Interest in 4O4D designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4O4D_ATP_A_404Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4O4D_ATP_A_404Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4O4D_ATP_A_404Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
4O4D_ATP_A_404 95% 42% 0.074 0.9790.97 1.29 1 300100%1
4O4E_ATP_A_404 69% 42% 0.121 0.9350.87 1.37 - 300100%1
8OMI_ATP_A_303 56% 7% 0.13 0.9021.66 3.07 2 800100%1
4O4F_ATP_A_404 55% 37% 0.127 0.8931.13 1.34 3 400100%1
2PNN_ATP_A_374 100% 30% 0.027 0.9951.34 1.43 4 520100%0.9774
5J1T_ATP_A_401 100% 31% 0.03 0.9941.31 1.43 2 700100%1
1XDN_ATP_A_501 100% 45% 0.03 0.991 1.14 2 300100%1
3MHY_ATP_C_113 100% 53% 0.034 0.9920.86 0.94 - 200100%1
8YN0_ATP_E_601 100% 30% 0.035 0.9910.88 1.89 - 830100%0.93