Ligand validation:5WDJ

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 5WDJ designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5WDJ_NAG_B_603	64%	66%	0.081	0.877	0.5	0.81	-	-	1	0	100%	0.9333
5WDJ_NAG_E_609	58%	64%	0.096	0.873	0.45	0.92	-	-	0	0	100%	0.9333
5WDJ_NAG_E_610	41%	66%	0.101	0.813	0.57	0.74	-	-	0	0	100%	0.9333
5WDJ_NAG_B_601	39%	18%	0.116	0.818	1.35	2.14	2	4	6	0	100%	0.9333
5WDJ_NAG_B_604	30%	27%	0.118	0.78	1.23	1.69	2	3	0	0	100%	0.9333
4DL1_NAG_C_603	100%	56%	0.025	0.992	0.55	1.14	-	1	0	0	100%	0.9333
6WY7_NAG_E_601	86%	76%	0.063	0.929	0.26	0.69	-	1	0	0	100%	0.9333
5QJ2_NAG_B_605	85%	25%	0.073	0.951	0.88	2.14	-	6	4	0	93%	0.9333
6WXZ_NAG_E_602	83%	73%	0.078	0.947	0.34	0.71	-	-	5	0	93%	0.9333
1D5L_NAG_C_602	82%	55%	0.076	0.93	0.86	0.88	1	1	0	0	100%	0.9333
3H0C_NAG_A_794	100%	56%	0.021	0.995	0.61	1.08	-	1	0	0	100%	0.9333
5F9W_NAG_A_510	100%	88%	0.023	0.994	0.24	0.43	-	-	0	0	100%	0.9333
5LDS_NAG_B_1007	100%	67%	0.022	0.995	0.48	0.79	-	-	0	0	100%	0.9333
5O5D_NAG_A_601	100%	65%	0.022	0.994	0.32	0.99	-	1	0	0	100%	0.9333
6MUG_NAG_G_629	100%	76%	0.022	0.994	0.35	0.58	-	-	0	0	100%	0.9333

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.