5Y5S
PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
PGV is a Ligand Of Interest in 5Y5S designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5Y5S_PGV_M_413 | 40% | 48% | 0.162 | 0.891 | 1.06 | 0.97 | 2 | 4 | 5 | 0 | 90% | 1 |
| 5Y5S_PGV_H_303 | 34% | 39% | 0.195 | 0.931 | 1.1 | 1.27 | 2 | 4 | 1 | 0 | 71% | 1 |
| 5Y5S_PGV_M_414 | 31% | 41% | 0.168 | 0.883 | 1.07 | 1.21 | 2 | 3 | 3 | 0 | 73% | 1 |
| 5Y5S_PGV_D_104 | 24% | 41% | 0.188 | 0.876 | 1.07 | 1.2 | 2 | 5 | 2 | 0 | 69% | 1 |
| 5Y5S_PGV_A_105 | 21% | 40% | 0.224 | 0.894 | 1.18 | 1.18 | 2 | 3 | 5 | 0 | 65% | 1 |
| 5Y5S_PGV_L_306 | 18% | 45% | 0.22 | 0.829 | 0.99 | 1.12 | 2 | 2 | 5 | 0 | 86% | 1 |
| 5Y5S_PGV_1_105 | 16% | 39% | 0.185 | 0.823 | 1.21 | 1.18 | 2 | 3 | 0 | 0 | 61% | 1 |
| 5Y5S_PGV_L_305 | 14% | 41% | 0.225 | 0.8 | 1.04 | 1.26 | 2 | 3 | 5 | 0 | 84% | 1 |
| 5Y5S_PGV_C_509 | 3% | 26% | 0.267 | 0.685 | 1.44 | 1.58 | 3 | 3 | 0 | 0 | 41% | 1 |
| 5Y5S_PGV_3_104 | 1% | 52% | 0.392 | 0.477 | 0.94 | 0.92 | 2 | 2 | 3 | 0 | 100% | 1 |
| 7C52_PGV_H_303 | 17% | 41% | 0.275 | 0.908 | 1.1 | 1.19 | 2 | 4 | 2 | 0 | 71% | 1 |
| 5B1A_PGV_P_303 | 98% | 35% | 0.064 | 0.985 | 1.06 | 1.51 | 3 | 13 | 8 | 0 | 100% | 1 |
| 5X1B_PGV_C_302 | 95% | 52% | 0.078 | 0.981 | 0.92 | 0.93 | 2 | 4 | 0 | 0 | 100% | 1 |
| 5B1B_PGV_C_302 | 94% | 56% | 0.078 | 0.979 | 0.81 | 0.87 | 1 | 1 | 3 | 0 | 100% | 1 |
| 7YPY_PGV_P_302 | 94% | 54% | 0.079 | 0.978 | 0.79 | 0.99 | 2 | 2 | 1 | 0 | 100% | 1 |
| 7COH_PGV_C_267 | 93% | 49% | 0.087 | 0.983 | 0.87 | 1.09 | 3 | 3 | 0 | 0 | 100% | 1 |
