Ligand validation:6KDO


GOL: GLYCEROL



Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter6KDO_GOL_D_501Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter6KDO_GOL_D_501Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter6KDO_GOL_D_501Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
6KDO_GOL_D_501 46% 51% 0.221 0.9590.91 0.99 - -00100%1
6KDO_GOL_B_501 35% 50% 0.258 0.9490.92 1 - -10100%1
6KDO_GOL_C_602 31% 50% 0.256 0.9280.91 1 - -10100%1
6KDO_GOL_A_701 29% 51% 0.213 0.870.9 0.99 - -00100%1
8X21_GOL_D_502 52% 31% 0.192 0.9521.45 1.32 1 100100%1
8X22_GOL_D_502 50% 90% 0.178 0.9280.22 0.38 - -10100%1
2YOQ_GOL_A_1196 100% 35% 0.024 0.9960.38 2.12 - 200100%1
4KFD_GOL_D_806 100% 57% 0.024 0.9950.41 1.21 - -00100%1
4KFE_GOL_E_803 100% 63% 0.024 0.9950.31 1.07 - -00100%1
1M5Q_GOL_W_4006 100% 0% 0.027 0.9924.89 6.2 5 300100%1
2Y3G_GOL_A_1150 100% 85% 0.029 0.9950.36 0.39 - -00100%1