RCSB PDB: Search

1K28	Download File View File

The Structure of the Bacteriophage T4 Cell-Puncturing Device

Kanamaru, S., Leiman, P.G., Kostyuchenko, V.A., Chipman, P.R., Mesyanzhinov, V.V., Arisaka, F., Rossmann, M.G.

(2002) Nature 415: 553-557

Released	2002-02-06
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Tequatrovirus T4
Macromolecule	BASEPLATE STRUCTURAL PROTEIN GP27 (protein) TAIL-ASSOCIATED LYSOZYME (protein)
Unique Ligands	K, PO4

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1NO4	Download File View File

Crystal Structure of the pre-assembly scaffolding protein gp7 from the double-stranded DNA bacteriophage phi29

Morais, M.C., Kanamaru, S., Badasso, M.O., Koti, J.S., Owen, B.A.L., McMurray, C.T., Anderson, D.L., Rossmann, M.G.

(2003) Nat Struct Biol 10: 572-576

Released	2003-07-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Salasvirus phi29
Macromolecule	HEAD MORPHOGENESIS PROTEIN (protein)

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1NOH	Download File View File

The structure of bacteriophage phi29 scaffolding protein gp7 after prohead assembly

Morais, M.C., Kanamaru, S., Badasso, M.O., Koti, J.S., Owen, B.L., McMurray, C.T., L Anderson, D., Rossmann, M.G.

(2003) Nat Struct Biol 10: 572-576

Released	2003-07-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Salasvirus phi29
Macromolecule	HEAD MORPHOGENESIS PROTEIN (protein)

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1PDF	Download File View File

Fitting of gp11 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 baseplate-tail tube complex

Kostyuchenko, V.A., Leiman, P.G., Chipman, P.R., Kanamaru, S., van Raaij, M.J., Arisaka, F., Mesyanzhinov, V.V., Rossmann, M.G.

(2003) Nat Struct Biol 10: 688-693

Released	2003-09-09
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Tequatrovirus T4
Macromolecule	Baseplate structural protein Gp11 (protein)

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1PDI	Download File View File

Fitting of the C-terminal part of the short tail fibers into the cryo-EM reconstruction of T4 baseplate

Kostyuchenko, V.A., Leiman, P.G., Chipman, P.R., Kanamaru, S., van Raaij, M.J., Arisaka, F., Mesyanzhinov, V.V., Rossmann, M.G.

(2003) Nat Struct Biol 10: 688-693

Released	2003-09-09
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Tequatrovirus T4
Macromolecule	Short tail fiber protein (protein)

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1PDJ	Download File View File

Fitting of gp27 into cryoEM reconstruction of bacteriophage T4 baseplate

Kostyuchenko, V.A., Leiman, P.G., Chipman, P.R., Kanamaru, S., van Raaij, M.J., Arisaka, F., Mesyanzhinov, V.V., Rossmann, M.G.

(2003) Nat Struct Biol 10: 688-693

Released	2003-09-09
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Tequatrovirus T4
Macromolecule	Baseplate structural protein Gp27 (protein)

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1PDL	Download File View File

Fitting of gp5 in the cryoEM reconstruction of the bacteriophage T4 baseplate

Kostyuchenko, V.A., Leiman, P.G., Chipman, P.R., Kanamaru, S., van Raaij, M.J., Arisaka, F., Mesyanzhinov, V.V., Rossmann, M.G.

(2003) Nat Struct Biol 10: 688-693

Released	2003-09-09
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Tequatrovirus T4
Macromolecule	Tail-associated lysozyme (protein)

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1PDM	Download File View File

Fitting of gp8 structure into the cryoEM reconstruction of the bacteriophage T4 baseplate

Kostyuchenko, V.A., Leiman, P.G., Chipman, P.R., Kanamaru, S., van Raaij, M.J., Arisaka, F., Mesyanzhinov, V.V., Rossmann, M.G.

(2003) Nat Struct Biol 10: 688-693

Released	2003-09-09
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Tequatrovirus T4
Macromolecule	Baseplate structural protein Gp8 (protein)

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1PDP	Download File View File

Fitting of gp9 structure into the bacteriophage T4 baseplate cryoEM reconstruction

Kostyuchenko, V.A., Leiman, P.G., Chipman, P.R., Kanamaru, S., van Raaij, M.J., Arisaka, F., Mesyanzhinov, V.V., Rossmann, M.G.

(2003) Nat Struct Biol 10: 688-693

Released	2003-09-09
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Tequatrovirus T4
Macromolecule	Baseplate structural protein Gp9 (protein)

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1WTH	Download File View File

Crystal structure of gp5-S351L mutant and gp27 complex

Kanamaru, S., Ishiwata, Y., Suzuki, T., Rossmann, M.G., Arisaka, F.

(2005) J Mol Biology 346: 1013-1020

Released	2005-03-08
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Tequatrovirus T4
Macromolecule	Baseplate structural protein Gp27 (protein) Tail-associated lysozyme (protein)
Unique Ligands	K, PO4

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2Z6B	Download File View File

Crystal Structure Analysis of (gp27-gp5)3 conjugated with Fe(III) protoporphyrin

Koshiyama, T., Yokoi, N., Ueno, T., Kanamaru, S., Nagano, S., Shiro, Y., Arisaka, F., Watanabe, Y.

(2008) Small 4: 50-54

Released	2008-04-15
Method	X-RAY DIFFRACTION 3.11 Å
Organisms	Tequatrovirus T4
Macromolecule	Baseplate structural protein Gp27 (protein) Tail-associated lysozyme (protein)
Unique Ligands	NEN

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3A1M	Download File View File

A fusion protein of a beta helix region of gene product 5 and the foldon region of bacteriophage T4

Yokoi, N., Suzuki, A., Hikage, T., Koshiyama, T., Terauchi, M., Yutani, K., Kanamaru, S., Arisaka, F., Yamane, T., Watanabe, Y., Ueno, T.

(2010) Small 6: 1873-1879

Released	2010-04-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tequatrovirus T4
Macromolecule	chimera of thrombin cleavage site, Tail-associated lysozyme, Fibritin (protein)
Unique Ligands	K

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3J2M	Download File View File

The X-ray structure of the gp15 hexamer and the model of the gp18 protein fitted into the cryo-EM reconstruction of the extended T4 tail

Fokine, A., Zhang, Z., Kanamaru, S., Bowman, V.D., Aksyuk, A., Arisaka, F., Rao, V.B., Rossmann, M.G.

(2013) J Mol Biology 425: 1731-1744

Released	2013-03-06
Method	ELECTRON MICROSCOPY 15 Å
Organisms	Tequatrovirus T4
Macromolecule	Tail connector protein Gp15 (protein) Tail sheath protein Gp18 (protein)

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3J2N	Download File View File

The X-ray structure of the gp15 hexamer and the model of the gp18 protein fitted into the cryo-EM reconstruction of the contracted T4 tail

Fokine, A., Zhang, Z., Kanamaru, S., Bowman, V.D., Aksyuk, A., Arisaka, F., Rao, V.B., Rossmann, M.G.

(2013) J Mol Biology 425: 1731-1744

Released	2013-03-06
Method	ELECTRON MICROSCOPY 16 Å
Organisms	Tequatrovirus T4
Macromolecule	Tail connector protein Gp15 (protein) Tail sheath protein Gp18 (protein)

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3J2O	Download File View File

Model of the bacteriophage T4 fibritin based on the cryo-EM reconstruction of the contracted T4 tail containing the phage collar and whiskers

Fokine, A., Zhang, Z., Kanamaru, S., Bowman, V.D., Aksyuk, A.A., Arisaka, F., Rao, V.B., Rossmann, M.G.

(2013) J Mol Biology 425: 1731-1744

Released	2013-03-06
Method	ELECTRON MICROSCOPY 25 Å
Organisms	Tequatrovirus T4
Macromolecule	Fibritin (protein)

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3WIT	Download File View File

Crystal structure of the C-terminal region of VgrG1 from E. coli O157 EDL933

Uchida, K., Leiman, P.G., Arisaka, F., Kanamaru, S.

(2014) J Biochem 155: 173-182

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Putative Vgr protein (protein)

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4HUD	Download File View File

Structure of the bacteriophage T4 tail terminator protein, gp15.

Fokine, A., Zhang, Z., Kanamaru, S., Bowman, V.D., Aksyuk, A., Arisaka, F., Rao, V.B., Rossmann, M.G.

(2013) J Mol Biology 425: 1731-1744

Released	2013-02-27
Method	X-RAY DIFFRACTION 2.7001 Å
Organisms	Tequatrovirus T4
Macromolecule	Tail connector protein Gp15 (protein)

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4HUH	Download File View File

Structure of the bacteriophage T4 tail terminator protein, gp15 (C-terminal truncation mutant 1-261).

Fokine, A., Zhang, Z., Kanamaru, S., Bowman, V.D., Aksyuk, A., Arisaka, F., Rao, V.B., Rossmann, M.G.

(2013) J Mol Biology 425: 1731-1744

Released	2013-02-27
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Tequatrovirus T4
Macromolecule	Tail connector protein Gp15 (protein)

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5NXF	Download File View File

Crystal structure of the carboxy-terminal region of the bacteriophage T4 proximal long tail fibre protein gp34, residues 795 to 1289, at 1.9 Angstrom.

Namura, M., van Raaij, M.J., Kanamaru, S.

(2017) Viruses 9:

Released	2017-07-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Tequatrovirus T4
Macromolecule	Long-tail fiber proximal subunit (protein)
Unique Ligands	ACT, GOL, NA, PO4, URE

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5NXH	Download File View File

Crystal structure of the carboxy-terminal region of the bacteriophage T4 proximal long tail fibre protein gp34, residues 744-1289 at 2.9 Angstrom resolution

Namura, M., van Raaij, M.J., Kanamaru, S.

(2017) Viruses 9:

Released	2017-07-12
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Tequatrovirus T4
Macromolecule	Long-tail fiber proximal subunit (protein)
Unique Ligands	GOL

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7CN6	Download File View File

T4 phage spackle protein gp61.3

Kanamaru, S., Leiman, P.G.

(2020) Viruses 12:

Released	2020-10-14
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Tequatrovirus T4
Macromolecule	Protein spackle (protein)
Unique Ligands	CA

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7CN7	Download File View File

T4 phage spackle protein gp61.3 complex with lysozyme domain of gp5 tail lysozyme

Kanamaru, S., Leiman, P.G.

(2020) Viruses 12:

Released	2020-10-14
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Tequatrovirus T4
Macromolecule	Baseplate central spike complex protein gp5 (protein) Protein spackle (protein)
Unique Ligands	1PG, CL, EDO, NA