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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Devedjiev, Y."

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Search Summary

This query matches 34 Structures.

Refinements

Structure Determination Methodology

experimental (34)

Scientific Name of Source Organism

	Homo sapiens (19)
	Bacillus subtilis (9)
	synthetic construct (4)
	Bacillus subtilis subsp. subtilis str. 168 (2)
	Streptomyces lavendulae (2)
	Mus musculus (1)
	Yersinia pestis (1)

Taxonomy

	Eukaryota (20)
	Bacteria (14)
	other sequences (4)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (33)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (34)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (4)
	1.5 - 2.0 (18)
	2.0 - 2.5 (9)
	2.5 - 3.0 (1)

Release Date

	2000 - 2004 (26)
	2005 - 2009 (8)

Enzyme Classification Name

	Ligases (5)
	Transferases (4)
	Hydrolases (2)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (17)
	Cyclic (19)

SCOP Classification

	All beta proteins (16)
	Artifacts (13)
	Alpha and beta proteins (a+b) (12)
	Alpha and beta proteins (a/b) (7)
	All alpha proteins (3)
	Small proteins (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 34 Structures

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1EE1 \| pdb_00001ee1	Download File View File

CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM BACILLUS SUBTILIS COMPLEXED WITH ONE MOLECULE ATP, TWO MOLECULES DEAMIDO-NAD+ AND ONE MG2+ ION

Devedjiev, Y., Symersky, J., Singh, R., Jedrzejas, M., Brouillette, C., Brouillette, W., Muccio, D., Chattopadhyay, D., Delucas, L.

(2001) Acta Crystallogr D Biol Crystallogr 57: 806-812

Released	2001-06-06
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Bacillus subtilis
Macromolecule	NH(3)-DEPENDENT NAD(+) SYNTHETASE (protein)
Unique Ligands	ATP, DND, MG

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1FJ2 \| pdb_00001fj2	Download File View File

Crystal structure of the human acyl protein thioesterase 1 at 1.5 A resolution

Devedjiev, Y., Dauter, Z., Kuznetsov, S., Jones, T., Derewenda, Z.

(2000) Structure 8: 1137-1146

Released	2000-11-29
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (ACYL PROTEIN THIOESTERASE 1) (protein)
Unique Ligands	BR

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1FYD \| pdb_00001fyd	Download File View File

CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM BACILLUS SUBTILIS COMPLEXED WITH ONE MOLECULE AMP, ONE PYROPHOSPHATE ION AND ONE MG2+ ION

Devedjiev, Y., Symersky, J., Singh, R., Brouillette, W., Muccio, D., Jedrzejas, M., Brouillette, C., DeLucas, L.

(2001) Acta Crystallogr D Biol Crystallogr 57: 806-812

Released	2001-06-06
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Bacillus subtilis
Macromolecule	NH(3)-DEPENDENT NAD(+) SYNTHETASE (protein)
Unique Ligands	AMP, MG, POP

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1H4R \| pdb_00001h4r	Download File View File

Crystal Structure of the FERM domain of Merlin, the Neurofibromatosis 2 Tumor Suppressor Protein.

Cooper, D.R., Kang, B.S., Sheffield, P., Devedjiev, Y., Derewenda, Z.S.

(2002) Acta Crystallogr D Biol Crystallogr 58: 381

Released	2002-01-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	MERLIN (protein)
Unique Ligands	SO4

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1IFX \| pdb_00001ifx	Download File View File

CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM BACILLUS SUBTILIS COMPLEXED WITH TWO MOLECULES DEAMIDO-NAD

Devedjiev, Y., Symersky, J., Singh, R., Brouillette, W., Muccio, D., Jedrzejas, M., Brouillette, C., DeLucas, L.

(2001) Acta Crystallogr D Biol Crystallogr 57: 806-812

Released	2001-06-06
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Bacillus subtilis
Macromolecule	NH(3)-DEPENDENT NAD(+) SYNTHETASE (protein)
Unique Ligands	DND

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1IH8 \| pdb_00001ih8	Download File View File

NH3-dependent NAD+ Synthetase from Bacillus subtilis Complexed with AMP-CPP and Mg2+ ions.

Devedjiev, Y., Symersky, J., Singh, R., Jedrzejas, M., Brouillette, C., Brouillette, W., Muccio, D., Chattopadhyay, D., DeLucas, L.

(2001) Acta Crystallogr D Biol Crystallogr 57: 806-812

Released	2001-06-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus subtilis
Macromolecule	NH(3)-DEPENDENT NAD(+) synthetase (protein)
Unique Ligands	APC, MG

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1KLL \| pdb_00001kll	Download File View File

Molecular basis of mitomycin C resictance in streptomyces: Crystal structures of the MRD protein with and without a drug derivative

Martin, T.W., Dauter, Z., Devedjiev, Y., Sheffield, P., Jelen, F., He, M., Sherman, D., Otlewski, J., Derewenda, Z.S., Derewenda, U.

(2002) Structure 10: 933-942

Released	2002-07-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptomyces lavendulae
Macromolecule	mitomycin-binding protein (protein)
Unique Ligands	MC

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1KMT \| pdb_00001kmt	Download File View File

Crystal structure of RhoGDI Glu(154,155)Ala mutant

Mateja, A., Devedjiev, Y., Krowarsh, D., Longenecker, K., Dauter, Z., Otlewski, J., Derewenda, Z.S.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1983-1991

Released	2002-12-11
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Rho GDP-dissociation inhibitor 1 (protein)

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1KMZ \| pdb_00001kmz	Download File View File

MOLECULAR BASIS OF MITOMYCIN C RESICTANCE IN STREPTOMYCES: CRYSTAL STRUCTURES OF THE MRD PROTEIN WITH AND WITHOUT A DRUG DERIVATIVE

Martin, T.W., Dauter, Z., Devedjiev, Y., Sheffield, P., Jelen, F., He, M., Sherman, D., Otlewski, J., Derewenda, Z.S., Derewenda, U.

(2002) Structure 10: 933-942

Released	2002-07-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptomyces lavendulae
Macromolecule	mitomycin-binding protein (protein)

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1KQP \| pdb_00001kqp	Download File View File

NH3-DEPENDENT NAD+ SYNTHETASE FROM BACILLUS SUBTILIS AT 1 A RESOLUTION

Symersky, J., Devedjiev, Y., Moore, K., Brouillette, C., DeLucas, L.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1138-1146

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.03 Å
Organisms	Bacillus subtilis
Macromolecule	NH(3)-dependent NAD(+) synthetase (protein)
Unique Ligands	ADJ, EDO, MG, POP

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1MFW \| pdb_00001mfw	Download File View File

STRUCTURE OF N-TERMINAL DOUBLECORTIN DOMAIN FROM DCLK: SELENOMETHIONINE LABELED PROTEIN

Kim, M.H., Cierpickil, T., Derewenda, U., Krowarsch, D., Feng, Y., Devedjiev, Y., Dauter, Z., Walsh, C.A., Otlewski, J., Bushweller, J.H., Derewenda, Z.

(2003) Nat Struct Biol 10: 324-333

Released	2003-04-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	DOUBLECORTIN-LIKE KINASE (N-TERMINAL DOMAIN) (protein)
Unique Ligands	SO4

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1MG4 \| pdb_00001mg4	Download File View File

STRUCTURE OF N-TERMINAL DOUBLECORTIN DOMAIN FROM DCLK: WILD TYPE PROTEIN

Kim, M.H., Cierpickil, T., Derewenda, U., Krowarsch, D., Feng, Y., Devedjiev, Y., Dauter, Z., Walsh, C.A., Otlewski, J., Bushweller, J.H., Derewenda, Z.

(2003) Nat Struct Biol 10: 324-333

Released	2003-04-29
Method	X-RAY DIFFRACTION 1.504 Å
Organisms	Homo sapiens
Macromolecule	DOUBLECORTIN-LIKE KINASE (N-TERMINAL DOMAIN) (protein)
Unique Ligands	SO4

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1MJD \| pdb_00001mjd	Download File View File

Structure of N-terminal domain of human doublecortin

Kim, M.H., Cierpicki, T., Derewenda, U., Krowarsch, D., Feng, Y., Devedjiev, Y., Dauter, Z., Walsh, C.A., Otlewski, J., Bushweller, J.H., Derewenda, Z.S.

(2003) Nat Struct Biol 10: 324-333

Released	2003-04-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DOUBLECORTIN (protein)

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1N99 \| pdb_00001n99	Download File View File

CRYSTAL STRUCTURE OF THE PDZ TANDEM OF HUMAN SYNTENIN

Kang, B.S., Cooper, D.R., Jelen, F., Devedjiev, Y., Derewenda, U., Dauter, Z., Otlewski, J., Derewenda, Z.S.

(2003) Structure 11: 459-468

Released	2003-04-15
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Homo sapiens
Macromolecule	Syntenin 1 (protein)

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1NTE \| pdb_00001nte	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF THE SECOND PDZ DOMAIN OF SYNTENIN

Kang, B.S., Cooper, D.R., Devedjiev, Y., Derewenda, U., Derewenda, Z.S.

(2003) Structure 11: 845-853

Released	2003-07-15
Method	X-RAY DIFFRACTION 1.24 Å
Organisms	Homo sapiens
Macromolecule	Syntenin 1 (protein)
Unique Ligands	O

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1OBX \| pdb_00001obx	Download File View File

Crystal structure of the complex of PDZ2 of syntenin with an interleukin 5 receptor alpha peptide.

Kang, B.S., Cooper, D.R., Devedjiev, Y., Derewenda, U., Derewenda, Z.S.

(2003) Structure 11: 845

Released	2003-07-10
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	INTERLEUKIN 5 RECEPTOR ALPHA (protein) SYNTENIN 1 (protein)
Unique Ligands	CO, SO4

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1OBY \| pdb_00001oby	Download File View File

Crystal structure of the complex of PDZ2 of syntenin with a syndecan-4 peptide.

Kang, B.S., Cooper, D.R., Devedjiev, Y., Derewenda, U., Derewenda, Z.S.

(2003) Structure 11: 845

Released	2003-07-11
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	SYNDECAN-4 (protein) SYNTENIN 1 (protein)
Unique Ligands	SO4

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1OBZ \| pdb_00001obz	Download File View File

Crystal structure of the complex of the PDZ tandem of syntenin with an interleukin 5 receptor alpha peptide.

Kang, B.S., Cooper, D.R., Devedjiev, Y., Derewenda, U., Derewenda, Z.S.

(2003) Structure 11: 845

Released	2003-07-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	INTERLEUKIN 5 RECEPTOR ALPHA (protein) SYNTENIN 1 (protein)
Unique Ligands	ACT

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1QVY \| pdb_00001qvy	Download File View File

Crystal structure of RhoGDI K(199,200)R double mutant

Czepas, J., Devedjiev, Y., Krowarsh, D., Derewenda, U., Derewenda, Z.S.

(2004) Acta Crystallogr D Biol Crystallogr 60: 275-280

Released	2004-02-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Rho GDP-dissociation inhibitor 1 (protein)
Unique Ligands	SO4

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1R6F \| pdb_00001r6f	Download File View File

The structure of Yersinia pestis V-antigen, an essential virulence factor and mediator of immunity against plague

Derewenda, U., Mateja, A., Devedjiev, Y., Routzahn, K.M., Evdokimov, A.G., Derewenda, Z.S., Waugh, D.S.

(2004) Structure 12: 301-306

Released	2004-03-09
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Yersinia pestis
Macromolecule	Virulence-associated V antigen (protein)

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1R6J \| pdb_00001r6j	Download File View File

Ultrahigh resolution Crystal Structure of syntenin PDZ2

Kang, B.S., Devedjiev, Y., Derewenda, U., Derewenda, Z.S.

(2004) J Mol Biology 338: 483-493

Released	2004-05-04
Method	X-RAY DIFFRACTION 0.73 Å
Organisms	Homo sapiens
Macromolecule	Syntenin 1 (protein)
Unique Ligands	CL

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1S99 \| pdb_00001s99	Download File View File

The structure and function of B. subtilis YkoF gene product: ligand free protein

Devedjiev, Y., Surendranath, Y., Derewenda, U., Derewenda, Z.S.

(2004) J Mol Biology 343: 395-406

Released	2004-10-05
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Bacillus subtilis
Macromolecule	ykoF (protein)
Unique Ligands	ACT, CA

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1SBR \| pdb_00001sbr	Download File View File

The structure and function of B. subtilis YkoF gene product: the complex with thiamin

Devedjiev, Y., Surendranath, Y., Derewenda, U., Derewenda, Z.S.

(2004) J Mol Biology 343: 395-406

Released	2004-10-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus subtilis
Macromolecule	ykoF (protein)
Unique Ligands	CA, VIB

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1UUJ \| pdb_00001uuj	Download File View File

N-terminal domain of Lissencephaly-1 protein (Lis-1)

Cooper, D.R., Kim, M.H., Devedjiev, Y., Derewenda, U., Derewenda, Z.S.

(2004) Structure 12: 987

Released	2004-07-29
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mus musculus
Macromolecule	PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB ALPHA SUBUNIT (protein)
Unique Ligands	ACT, BEZ, SO4