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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Katoh, E."

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Oryza sativa (5)
	Solanum lycopersicum (4)
	Tobacco mosaic virus strain tomato/L (3)
	Oryza sativa Japonica Group (2)
	Arabidopsis thaliana (1)
	Escherichia coli (1)
	Glycine max (1)

Taxonomy

	Eukaryota (12)
	Riboviria (3)
	Bacteria (1)
	Eukaryota (eukaryotes) (1)

Experimental Method

	SOLUTION NMR (8)
	X-RAY DIFFRACTION (8)

Polymer Entity Type

	Protein (15)
	RNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (2)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (5)
	2010 - 2014 (5)
	2020 - 2024 (1)

Enzyme Classification Name

	Transferases (4)
	Hydrolases (3)
	Oxidoreductases (2)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (11)
	Cyclic (3)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (5)
	Alpha and beta proteins (a/b) (2)
	Artifacts (3)
	Small proteins (2)
	All alpha proteins (1)

AllSelected

1 to 16 of 16 Structures

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1DCJ \| pdb_00001dcj	Download File View File

SOLUTION STRUCTURE OF YHHP, A NOVEL ESCHERICHIA COLI PROTEIN IMPLICATED IN THE CELL DIVISION

Katoh, E., Hatta, T., Shindo, H., Mizuno, T., Yamazaki, T.

(2000) J Mol Biology 304: 219-229

Released	2001-07-18
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	YHHP PROTEIN (protein)

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1IRZ \| pdb_00001irz	Download File View File

Solution structure of ARR10-B belonging to the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators

Yamazaki, T., Katoh, E., Hosoda, K., Mizuno, T.

(2003) Plant Cell 14: 2015-2029

Released	2003-02-11
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	ARR10-B (protein)

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1IYM \| pdb_00001iym	Download File View File

RING-H2 finger domain of EL5

Katoh, E., Katoh, S., Minami, E., Yamazaki, T.

(2003) J Biological Chem 278: 15341-15348

Released	2003-07-22
Method	SOLUTION NMR
Organisms	Oryza sativa
Macromolecule	EL5 (protein)
Unique Ligands	ZN

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1JU8 \| pdb_00001ju8	Download File View File

Solution structure of Leginsulin, a plant hormon

Yamazaki, T., Takaoka, M., Katoh, E., Hanada, K., Sakita, M., Sakata, K., Nishiuchi, Y., Hirano, H.

(2003) Eur J Biochem 270: 1269-1276

Released	2003-06-17
Method	SOLUTION NMR
Organisms	Glycine max
Macromolecule	Leginsulin (protein)

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1K2G \| pdb_00001k2g	Download File View File

Structural basis for the 3'-terminal guanosine recognition by the group I intron

Kitamura, Y., Muto, Y., Watanabe, S., Kim, I., Ito, T., Nishiya, Y., Sakamoto, K., Ohtsuki, T., Kawai, G., Watanabe, K., Hosono, K., Takaku, H., Katoh, E., Yamazaki, T., Inoue, T., Yokoyama, S.

(2002) RNA 8: 440-451

Released	2002-05-08
Method	SOLUTION NMR
Macromolecule	5'-R(CPAPGPAPCPUPUPCPGPGPUPCPGPCPAPGPAPGPAPUPGPG)-3' (nucleic acid)

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1TH5 \| pdb_00001th5	Download File View File

Solution structure of C-terminal domain of NifU-like protein from Oryza sativa

Kumeta, H., Ogura, K., Asayama, M., Katoh, S., Katoh, E., Inagaki, F.

(2007) J Biomol NMR 38: 161-164

Released	2005-09-27
Method	SOLUTION NMR
Organisms	Oryza sativa
Macromolecule	NifU1 (protein)

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1WMJ \| pdb_00001wmj	Download File View File

Solution structure of Thioredoxin type h from Oryza sativa

Kumeta, H., Ogura, H., Akagi, K., Katoh, E., Inagaki, F.

To be published

Released	2005-10-25
Method	SOLUTION NMR
Organisms	Oryza sativa
Macromolecule	Thioredoxin H-type (protein)

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2CVO \| pdb_00002cvo	Download File View File

Crystal structure of putative N-acetyl-gamma-glutamyl-phosphate reductase (AK071544) from rice (Oryza sativa)

Nonaka, T., Kita, A., Miura-Ohnuma, J., Katoh, E., Inagaki, N., Yamazaki, T., Miki, K.

(2005) Proteins 61: 1137-1140

Released	2005-12-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Oryza sativa
Macromolecule	putative Semialdehyde dehydrogenase (protein)

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2JNV \| pdb_00002jnv	Download File View File

Solution structure of C-terminal domain of NifU-like protein from Oryza sativa

Saio, T., Ogura, K., Kumeta, H., Yokochi, M., Katoh, S., Katoh, E., Inagaki, F., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2007) J Biochem 142: 113-121

Released	2007-12-18
Method	SOLUTION NMR
Organisms	Oryza sativa
Macromolecule	NifU-like protein 1, chloroplast (protein)

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2ZOM \| pdb_00002zom	Download File View File

Crystal structure of CutA1 from Oryza sativa

Kezuka, Y., Bagautdinov, B., Katoh, S., Ohtake, Y., Yutani, K., Nonaka, T., Katoh, E.

To be published

Released	2009-05-26
Method	X-RAY DIFFRACTION 3.02 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Protein CutA, chloroplast, putative, expressed (protein)
Unique Ligands	GOL, SO4

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3VKW \| pdb_00003vkw	Download File View File

Crystal Structure of the Superfamily 1 Helicase from Tomato Mosaic Virus

Nishikiori, M., Sugiyama, S., Xiang, H., Niiyama, M., Ishibashi, K., Inoue, T., Ishikawa, M., Matsumura, H., Katoh, E.

(2012) J Virol 86: 7565-7576

Released	2012-07-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Tobacco mosaic virus strain tomato/L
Macromolecule	Replicase large subunit (protein)
Unique Ligands	SO4

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3WRV \| pdb_00003wrv	Download File View File

Crystal structure of NN domain of resistance protein

Matsumura, H., Katoh, E.

(2014) Proc Natl Acad Sci U S A 111: E3486-E3495

Released	2014-08-13
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Solanum lycopersicum
Macromolecule	Tm-1 protein (protein)

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3WRW \| pdb_00003wrw	Download File View File

Crystal structure of the N-terminal domain of resistance protein

Katoh, E., Kezuka, Y.

(2014) Proc Natl Acad Sci U S A 111: E3486-E3495

Released	2014-08-13
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Solanum lycopersicum
Macromolecule	Tm-1 protein (protein)
Unique Ligands	TLA

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3WRX \| pdb_00003wrx	Download File View File

Crystal structure of helicase complex 1

Matsumura, H., Katoh, E.

(2014) Proc Natl Acad Sci U S A 111: E3486-E3495

Released	2014-08-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Solanum lycopersicum Tobacco mosaic virus strain tomato/L
Macromolecule	Replicase large subunit (protein) Tm-1 protein (protein)
Unique Ligands	AGS, CS, MG

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3WRY \| pdb_00003wry	Download File View File

Crystal structure of helicase complex 2

Matsumura, H., Katoh, E.

(2014) Proc Natl Acad Sci U S A 111: E3486-E3495

Released	2014-08-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Solanum lycopersicum Tobacco mosaic virus strain tomato/L
Macromolecule	Replicase large subunit (protein) Tm-1 protein (protein)
Unique Ligands	AGS, CL, MG

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8KG3 \| pdb_00008kg3	Download File View File

Structure of THOUSAND-GRAIN WEIGHT 6 (TGW6)

Akabane, T., Suzuki, N., Matsumura, H., Yoshizawa, T., Tsuchiya, W., Katoh, E., Hirotsu, N.

(2024) Sci Rep 14: 6778-6778

Released	2024-04-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Os06g0623700 protein (protein)

1 to 16 of 16 Structures

Page 1 of 1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1DCJ | pdb_00001dcj

SOLUTION STRUCTURE OF YHHP, A NOVEL ESCHERICHIA COLI PROTEIN IMPLICATED IN THE CELL DIVISION

1IRZ | pdb_00001irz

Solution structure of ARR10-B belonging to the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators

1IYM | pdb_00001iym

RING-H2 finger domain of EL5

1JU8 | pdb_00001ju8

Solution structure of Leginsulin, a plant hormon

1K2G | pdb_00001k2g

Structural basis for the 3'-terminal guanosine recognition by the group I intron

1TH5 | pdb_00001th5

Solution structure of C-terminal domain of NifU-like protein from Oryza sativa

1WMJ | pdb_00001wmj

Solution structure of Thioredoxin type h from Oryza sativa

2CVO | pdb_00002cvo

Crystal structure of putative N-acetyl-gamma-glutamyl-phosphate reductase (AK071544) from rice (Oryza sativa)

2JNV | pdb_00002jnv

Solution structure of C-terminal domain of NifU-like protein from Oryza sativa

2ZOM | pdb_00002zom

Crystal structure of CutA1 from Oryza sativa

3VKW | pdb_00003vkw

Crystal Structure of the Superfamily 1 Helicase from Tomato Mosaic Virus

3WRV | pdb_00003wrv

Crystal structure of NN domain of resistance protein

3WRW | pdb_00003wrw

Crystal structure of the N-terminal domain of resistance protein

3WRX | pdb_00003wrx

Crystal structure of helicase complex 1

3WRY | pdb_00003wry

Crystal structure of helicase complex 2

8KG3 | pdb_00008kg3

Structure of THOUSAND-GRAIN WEIGHT 6 (TGW6)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1DCJ | pdb_00001dcj

1IRZ | pdb_00001irz

1IYM | pdb_00001iym

1JU8 | pdb_00001ju8

1K2G | pdb_00001k2g

1TH5 | pdb_00001th5

1WMJ | pdb_00001wmj

2CVO | pdb_00002cvo

2JNV | pdb_00002jnv

2ZOM | pdb_00002zom

3VKW | pdb_00003vkw

3WRV | pdb_00003wrv

3WRW | pdb_00003wrw

3WRX | pdb_00003wrx

3WRY | pdb_00003wry

8KG3 | pdb_00008kg3