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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kawatkar, S."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Homo sapiens (5)
	Paenibacillus polymyxa (3)
	Pyrococcus furiosus (3)
	Trypanosoma brucei brucei (3)
	Canis lupus familiaris (2)
	Mus musculus (2)

Taxonomy

	Eukaryota (9)
	Archaea (3)
	Bacteria (3)
	Eukaryota (eukaryotes) (3)

Experimental Method

	SOLUTION NMR (9)
	X-RAY DIFFRACTION (9)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (1)
	2.5 - 3.0 (3)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (1)
	2005 - 2009 (1)
	2010 - 2014 (8)
	2015 - 2019 (1)
	2020 - 2024 (5)

Enzyme Classification Name

	Hydrolases (6)
	Oxidoreductases (3)
	Isomerases (3)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (15)
	Dihedral (3)

SCOP Classification

	All beta proteins (3)
	Small proteins (3)
	Artifacts (2)

AllSelected

1 to 18 of 18 Structures

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1L3H \| pdb_00001l3h	Download File View File

NMR structure of P41icf, a potent inhibitor of human cathepsin L

Chiva, C., Barthe, P., Codina, A., Giralt, E.

(2003) J Am Chem Soc 125: 1508-1517

Released	2003-03-04
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	MHC CLASS II-ASSOCIATED P41 INVARIANT CHAIN FRAGMENT (P41icf) (protein)

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1MKC \| pdb_00001mkc	Download File View File

C-TERMINAL DOMAIN OF MIDKINE

Iwasaki, W., Nagata, K., Hatanaka, H., Ogura, K., Inui, T., Kimura, T., Muramatsu, T., Yoshida, K., Tasumi, M., Inagaki, F.

(1997) EMBO J 16: 6936-6946

Released	1999-03-23
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (MIDKINE) (protein)

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1MKN \| pdb_00001mkn	Download File View File

N-TERMINAL HALF OF MIDKINE

Iwasaki, W., Nagata, K., Hatanaka, H., Ogura, K., Inui, T., Kimura, T., Muramatsu, T., Yoshida, K., Tasumi, M., Inagaki, F.

(1997) EMBO J 16: 6936-6946

Released	1999-03-23
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (MIDKINE) (protein)

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2KTD \| pdb_00002ktd	Download File View File

Solution structure of mouse lipocalin-type prostaglandin D synthase / substrate analog (U-46619) complex

Shimamoto, S., Maruo, H., Yoshida, T., Kato, N., Ohkubo, T.

To be published

Released	2011-02-02
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Prostaglandin-H2 D-isomerase (protein)
Unique Ligands	PUC

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2L87 \| pdb_00002l87	Download File View File

The 27-residue N-terminus CCR5-peptide in a ternary complex with HIV-1 gp120 and a CD4-mimic peptide

Schnur, E., Noah, E., Ayzenshtat, I., Sargsyan, H., Inui, T., Ding, F.X., Arshava, B., Sagi, Y., Kessler, N., Levy, R., Scherf, T., Naider, F., Anglister, J.

(2011) J Mol Biology 410: 778-797

Released	2011-07-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	C-C chemokine receptor type 5 (protein)

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2LAA \| pdb_00002laa	Download File View File

Solution Strucuture of the CBM25-1 of beta/alpha-amylase from Paenibacillus polymyxa

Horibe, I., Nishimura, S., Takahashi, R., Ohkubo, T., Yoshida, T.

To be published

Released	2012-04-04
Method	SOLUTION NMR
Organisms	Paenibacillus polymyxa
Macromolecule	Beta/alpha-amylase (protein)

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2LAB \| pdb_00002lab	Download File View File

Solution Strucuture of the CBM25-2 of beta/alpha-amylase from Paenibacillus polymyxa

Takahashi, R., Nishimura, S., Ohkubo, T., Yoshida, T.

To be published

Released	2012-04-04
Method	SOLUTION NMR
Organisms	Paenibacillus polymyxa
Macromolecule	Beta/alpha-amylase (protein)

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2RQ0 \| pdb_00002rq0	Download File View File

Solution Structure of Mouse Lipocalin-type Prostaglandin D Synthase Possessing the Intrinsic Disulfide Bond

Miyamoto, Y., Nishimura, S., Inui, T.

(2009) J Struct Biol

Released	2009-12-15
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Prostaglandin-H2 D-isomerase (protein)

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3A4W \| pdb_00003a4w	Download File View File

Crystal structures of catalytic site mutants of active domain 2 of thermostable chitinase from Pyrococcus furiosus complexed with chito-oligosaccharides

Tsuji, H., Nishimura, S., Inui, T., Ishikawa, K., Nakamura, T., Uegaki, K.

(2010) FEBS J 277: 2683-2695

Released	2010-06-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pyrococcus furiosus
Macromolecule	Chitinase (protein)
Unique Ligands	MG, SO4
Unique branched monosaccharides	NAG

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3A4X \| pdb_00003a4x	Download File View File

Crystal structures of catalytic site mutants of active domain 2 of thermostable chitinase from Pyrococcus furiosus complexed with chito-oligosaccharides

Tsuji, H., Nishimura, S., Inui, T., Ishikawa, K., Nakamura, T., Uegaki, K.

(2010) FEBS J 277: 2683-2695

Released	2010-06-09
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Pyrococcus furiosus
Macromolecule	Chitinase (protein)
Unique Ligands	GOL, MG, SO4
Unique branched monosaccharides	NAG, NDG

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3AFB \| pdb_00003afb	Download File View File

Crystal structures of catalytic site mutants of active domain 2 of chitinase from Pyrococcus furiosus

Tsuji, H.

(2010) FEBS J 277: 2683-2695

Released	2010-06-09
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Pyrococcus furiosus
Macromolecule	Putative chitinase (protein)
Unique Ligands	GOL, MG, SO4

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3VOC \| pdb_00003voc	Download File View File

Crystal structure of the catalytic domain of beta-amylase from paenibacillus polymyxa

Nishimura, S., Fujioka, T., Nakaniwa, T., Tada, T.

To be published

Released	2013-02-20
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Paenibacillus polymyxa
Macromolecule	Beta/alpha-amylase (protein)
Unique Ligands	CA, CL, EDO, GOL, PEG, TRS

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5X7Y \| pdb_00005x7y	Download File View File

Crystal Structure of the Dog Lipocalin Allergen Can f 6

Yamamoto, K., Otani, T., Sugiura, K., Nakatsuji, M., Nishimura, S., Inui, T.

(2019) Sci Rep 9: 1503-1503

Released	2018-04-04
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Canis lupus familiaris
Macromolecule	Lipocalin-Can f 6 allergen (protein)
Unique Ligands	PEG

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6JIG \| pdb_00006jig	Download File View File

Crystal structure of GMP reductase C318A from Trypanosoma brucei in complex with guanosine 5'-monophosphate

Mase, H., Imamura, A., Nishimura, S., Inui, T.

(2020) Nat Commun 11: 1837-1837

Released	2020-02-26
Method	X-RAY DIFFRACTION 1.903 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	GMP reductase (protein)
Unique Ligands	5GP, K

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6JL8 \| pdb_00006jl8	Download File View File

Crystal structure of GMP reductase C318A from Trypanosoma brucei

Mase, H., Imamura, A., Nishimura, S., Inui, T.

(2020) Nat Commun 11: 1837-1837

Released	2020-03-04
Method	X-RAY DIFFRACTION 2.804 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	GMP reductase (protein)

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6LK4 \| pdb_00006lk4	Download File View File

Crystal structure of GMP reductase from Trypanosoma brucei in complex with guanosine 5'-triphosphate

Mase, H., Otani, T., Imamura, A., Nishimura, S., Inui, T.

(2020) Nat Commun 11: 1837-1837

Released	2020-03-18
Method	X-RAY DIFFRACTION 2.503 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	Guanosine 5'-monophosphate Reductase (protein)
Unique Ligands	GTP, PO4

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7DRU \| pdb_00007dru	Download File View File

Crystal Structure of the Dog Lipocalin Allergen Can f 1

Suda, K., Muroya, H., Nishimura, S., Inui, T.

(2022) FEBS J 289: 1668-1679

Released	2021-11-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Canis lupus familiaris
Macromolecule	Major allergen Can f 1 (protein)

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8HTA \| pdb_00008hta	Download File View File

Solution Structure of the C65A/C167A Mutant of Human Lipocalin-type Prostaglandin D Synthase

Miyamoto, Y., Inui, T.

(2023) FEBS J 290: 3983-3996

Released	2023-04-19
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Prostaglandin-H2 D-isomerase (protein)

1 to 18 of 18 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1L3H | pdb_00001l3h

NMR structure of P41icf, a potent inhibitor of human cathepsin L

1MKC | pdb_00001mkc

C-TERMINAL DOMAIN OF MIDKINE

1MKN | pdb_00001mkn

N-TERMINAL HALF OF MIDKINE

2KTD | pdb_00002ktd

Solution structure of mouse lipocalin-type prostaglandin D synthase / substrate analog (U-46619) complex

2L87 | pdb_00002l87

The 27-residue N-terminus CCR5-peptide in a ternary complex with HIV-1 gp120 and a CD4-mimic peptide

2LAA | pdb_00002laa

Solution Strucuture of the CBM25-1 of beta/alpha-amylase from Paenibacillus polymyxa

2LAB | pdb_00002lab

Solution Strucuture of the CBM25-2 of beta/alpha-amylase from Paenibacillus polymyxa

2RQ0 | pdb_00002rq0

Solution Structure of Mouse Lipocalin-type Prostaglandin D Synthase Possessing the Intrinsic Disulfide Bond

3A4W | pdb_00003a4w

Crystal structures of catalytic site mutants of active domain 2 of thermostable chitinase from Pyrococcus furiosus complexed with chito-oligosaccharides

3A4X | pdb_00003a4x

Crystal structures of catalytic site mutants of active domain 2 of thermostable chitinase from Pyrococcus furiosus complexed with chito-oligosaccharides

3AFB | pdb_00003afb

Crystal structures of catalytic site mutants of active domain 2 of chitinase from Pyrococcus furiosus

3VOC | pdb_00003voc

Crystal structure of the catalytic domain of beta-amylase from paenibacillus polymyxa

5X7Y | pdb_00005x7y

Crystal Structure of the Dog Lipocalin Allergen Can f 6

6JIG | pdb_00006jig

Crystal structure of GMP reductase C318A from Trypanosoma brucei in complex with guanosine 5'-monophosphate

6JL8 | pdb_00006jl8

Crystal structure of GMP reductase C318A from Trypanosoma brucei

6LK4 | pdb_00006lk4

Crystal structure of GMP reductase from Trypanosoma brucei in complex with guanosine 5'-triphosphate

7DRU | pdb_00007dru

Crystal Structure of the Dog Lipocalin Allergen Can f 1

8HTA | pdb_00008hta

Solution Structure of the C65A/C167A Mutant of Human Lipocalin-type Prostaglandin D Synthase

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1L3H | pdb_00001l3h

1MKC | pdb_00001mkc

1MKN | pdb_00001mkn

2KTD | pdb_00002ktd

2L87 | pdb_00002l87

2LAA | pdb_00002laa

2LAB | pdb_00002lab

2RQ0 | pdb_00002rq0

3A4W | pdb_00003a4w

3A4X | pdb_00003a4x

3AFB | pdb_00003afb

3VOC | pdb_00003voc

5X7Y | pdb_00005x7y

6JIG | pdb_00006jig

6JL8 | pdb_00006jl8

6LK4 | pdb_00006lk4

7DRU | pdb_00007dru

8HTA | pdb_00008hta