RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Lee, S."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 310 Structures.

Refinements

Structure Determination Methodology

experimental (310)

Scientific Name of Source Organism

	Homo sapiens (140)
	synthetic construct (25)
	Escherichia coli (20)
	Arabidopsis thaliana (14)
	Oryza sativa (11)
	Saccharomyces cerevisiae S288C (11)
	Meiothermus taiwanensis (10)
	Saccharomyces cerevisiae (10)
	Xenopus laevis (9)
	Escherichia coli K-12 (8)

More...

Taxonomy

	Eukaryota (196)
	Bacteria (91)
	other sequences (25)
	Riboviria (13)
	Archaea (11)
	Eukaryota (eukaryotes) (9)

Experimental Method

	X-RAY DIFFRACTION (240)
	ELECTRON MICROSCOPY (53)
	SOLUTION NMR (11)
	ELECTRON CRYSTALLOGRAPHY (6)

Polymer Entity Type

	Protein (309)
	DNA (108)
	RNA (6)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (7)
	1.5 - 2.0 (53)
	2.0 - 2.5 (113)
	2.5 - 3.0 (75)
	3.0 - 3.5 (24)
	3.5 - 4.0 (10)
	4.0 - 4.5 (3)
	> 4.5 (12)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (10)
	2005 - 2009 (30)
	2010 - 2014 (65)
	2015 - 2019 (82)
	2020 - 2024 (107)
	2025 - 2029 (10)

Enzyme Classification Name

	Lyases (77)
	Transferases (105)
	Hydrolases (70)
	Oxidoreductases (7)
	Isomerases (4)
	Translocases (4)
	Ligases (1)

Membrane Protein Annotation

	PDBTM (27)
	OPM (12)
	MemProtMD (7)
	mpstruc (4)

Symmetry Type

	Asymmetric (205)
	Cyclic (77)
	Dihedral (30)
	Helical (6)
	Icosahedral (2)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (41)
	All alpha proteins (24)
	Artifacts (17)
	All beta proteins (12)
	Alpha and beta proteins (a/b) (7)
	Peptides (7)
	Multi-domain proteins (alpha and beta) (3)
	Small proteins (3)
	Membrane and cell surface proteins and peptides (2)

AllSelected

1 to 25 of 310 Structures

Page 1 of 13

Sort by

Explore in 3D

1B66 \| pdb_00001b66	Download File View File

6-PYRUVOYL TETRAHYDROPTERIN SYNTHASE

Ploom, T., Thoeny, B., Yim, J., Lee, S., Nar, H., Leimbacher, W., Huber, R., Richardson, J., Auerbach, G.

(1999) J Mol Biology 286: 851-860

Released	1999-04-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rattus rattus
Macromolecule	6-PYRUVOYL TETRAHYDROPTERIN SYNTHASE (protein)
Unique Ligands	BIO, ZN

Explore in 3D

1B6Z \| pdb_00001b6z	Download File View File

6-PYRUVOYL TETRAHYDROPTERIN SYNTHASE

Ploom, T., Thoeny, B., Yim, J., Lee, S., Nar, H., Leimbacher, W., Huber, R., Richardson, J., Auerbach, G.

(1999) J Mol Biology 286: 851-860

Released	2000-01-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rattus norvegicus
Macromolecule	6-pyruvoyl tetrahydropterin synthase (protein)
Unique Ligands	ZN

Explore in 3D

1C3G \| pdb_00001c3g	Download File View File

S. CEREVISIAE HEAT SHOCK PROTEIN 40 SIS1

Sha, B., Lee, S., Cyr, D.

(2000) Structure 8: 799-807

Released	2000-08-03
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	HEAT SHOCK PROTEIN 40 (protein)

Explore in 3D

1C98 \| pdb_00001c98	Download File View File

SOLUTION STRUCTURE OF NEUROMEDIN B

Lee, S., Kim, Y.

(1999) FEBS Lett 460: 263-269

Released	1999-08-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	NEUROMEDIN B (protein)

Explore in 3D

1C9A \| pdb_00001c9a	Download File View File

SOLUTION STRUCTURE OF NEUROMEDIN B

Lee, S., Kim, Y.

(1999) FEBS Lett 460: 263-269

Released	1999-11-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	NEUROMEDIN B (protein)

Explore in 3D

1F0D \| pdb_00001f0d	Download File View File

Cecropin A(1-8)-magainin 2(1-12) in dodecylphosphocholine micelles

Oh, D., Shin, S.Y., Lee, S., Kim, Y.

(2000) Biochemistry 39: 11855-11864

Released	2000-06-14
Method	SOLUTION NMR
Organisms	Hyalophora cecropia Xenopus laevis
Macromolecule	CECROPIN A-MAGAININ 2 HYBRID PEPTIDE (protein)

Explore in 3D

1F0E \| pdb_00001f0e	Download File View File

Cecropin A(1-8)-magainin 2(1-12) modified gig to P in dodecylphosphocholine micelles

Oh, D., Shin, S.Y., Lee, S., Kim, Y.

(2000) Biochemistry 39: 11855-11864

Released	2000-06-14
Method	SOLUTION NMR
Organisms	Hyalophora cecropia Xenopus laevis
Macromolecule	CECROPIN A-MAGAININ 2 HYBRID PEPTIDE (protein)

Explore in 3D

1F0F \| pdb_00001f0f	Download File View File

Cecropin A(1-8)-magainin 2(1-12) gig deletion modification in dodecylphosphocholine micelles

Oh, D., Shin, S.Y., Lee, S., Kim, Y.

(2000) Biochemistry 39: 11855-11864

Released	2000-06-14
Method	SOLUTION NMR
Organisms	Hyalophora cecropia Xenopus laevis
Macromolecule	CECROPIN A-MAGAININ 2 HYBRID PEPTIDE (protein)

Explore in 3D

1F0G \| pdb_00001f0g	Download File View File

Cecropin A(1-8)-magainin 2(1-12) L2 in dodecylphosphocholine micelles

Oh, D., Shin, S.Y., Lee, S., Kim, Y.

(2000) Biochemistry 39: 11855-11864

Released	2000-06-14
Method	SOLUTION NMR
Organisms	Hyalophora cecropia Xenopus laevis
Macromolecule	CECROPIN A-MAGAININ 2 HYBRID PEPTIDE (protein)

Explore in 3D

1F0H \| pdb_00001f0h	Download File View File

Cecropin A(1-8)-magainin 2(1-12) A2 in dodecylphosphocholine micelles

Oh, D., Shin, S.Y., Lee, S., Kim, Y.

(2000) Biochemistry 39: 11855-11864

Released	2000-06-14
Method	SOLUTION NMR
Organisms	Hyalophora cecropia Xenopus laevis
Macromolecule	CECROPIN A-MAGAININ 2 HYBRID PEPTIDE (protein)

Explore in 3D

1IA5 \| pdb_00001ia5	Download File View File

POLYGALACTURONASE FROM ASPERGILLUS ACULEATUS

Cho, S.W., Lee, S., Shin, W.

(2001) J Mol Biology 311: 863-878

Released	2001-09-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Aspergillus aculeatus
Macromolecule	POLYGALACTURONASE (protein)
Unique Ligands	MAN
Unique branched monosaccharides	MAN, NAG

Explore in 3D

1P7G \| pdb_00001p7g	Download File View File

Crystal structure of superoxide dismutase from Pyrobaculum aerophilum

Lee, S., Sawaya, M.R., Eisenberg, D.

(2003) Acta Crystallogr D Biol Crystallogr 59: 2191-2199

Released	2003-12-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pyrobaculum aerophilum
Macromolecule	Superoxide dismutase (protein)
Unique Ligands	ACT, BME

Explore in 3D

1QVR \| pdb_00001qvr	Download File View File

Crystal Structure Analysis of ClpB

Lee, S., Sowa, M.E., Watanabe, Y., Sigler, P.B., Chiu, W., Yoshida, M., Tsai, F.T.F.

(2003) Cell 115: 229-240

Released	2003-10-21
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermus thermophilus
Macromolecule	ClpB protein (protein)
Unique Ligands	ANP, PT

Explore in 3D

1SVP \| pdb_00001svp	Download File View File

SINDBIS VIRUS CAPSID PROTEIN

Lee, S., Rossmann, M.G.

(1996) Structure 4: 531-541

Released	1996-08-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sindbis virus
Macromolecule	SINDBIS VIRUS CAPSID PROTEIN (protein)

Explore in 3D

1WYK \| pdb_00001wyk	Download File View File

SINDBIS VIRUS CAPSID PROTEIN (114-264)

Lee, S., Kuhn, R.J., Rossmann, M.G.

(1998) Proteins 33: 311-317

Released	1998-04-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sindbis virus
Macromolecule	SINDBIS VIRUS CAPSID PROTEIN (protein)
Unique Ligands	DIO, FOR

Explore in 3D

1YD8 \| pdb_00001yd8	Download File View File

COMPLEX OF HUMAN GGA3 GAT DOMAIN AND UBIQUITIN

Prag, G., Lee, S., Mattera, R., Arighi, C.N., Beach, B.M., Bonifacino, J.S., Hurley, J.H.

(2005) Proc Natl Acad Sci U S A 102: 2334-2339

Released	2005-02-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	ADP-RIBOSYLATION FACTOR BINDING PROTEIN GGA3 (protein) UBIQUIN (protein)

Explore in 3D

2AF9 \| pdb_00002af9	Download File View File

Crystal Structure analysis of GM2-Activator protein complexed with phosphatidylcholine

Wright, C.S., Mi, L.Z., Lee, S., Rastinejad, F.

(2005) Biochemistry 44: 13510-13521

Released	2005-10-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Ganglioside GM2 activator (protein)
Unique Ligands	DAO, IPA, MYR, OLA

Explore in 3D

2AG2 \| pdb_00002ag2	Download File View File

Crystal Structure Analysis of GM2-activator protein complexed with Phosphatidylcholine

Wright, C.S., Mi, L.Z., Lee, S., Rastinejad, F.

(2005) Biochemistry 44: 13510-13521

Released	2005-10-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Ganglioside GM2 activator (protein)
Unique Ligands	CH5, CL, DAO, EPE, IPA, LP3, MYR, OLA

Explore in 3D

2AG4 \| pdb_00002ag4	Download File View File

Crystal Structure Analysis of GM2-activator protein complexed with phosphatidylcholine

Wright, C.S., Mi, L.Z., Lee, S., Rastinejad, F.

(2005) Biochemistry 44: 13510-13521

Released	2005-10-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Ganglioside GM2 activator (protein)
Unique Ligands	IPA, LP3, OLA

Explore in 3D

2AG9 \| pdb_00002ag9	Download File View File

Crystal Structure of the Y137S mutant of GM2-Activator Protein

Wright, C.S., Mi, L.Z., Lee, S., Rastinejad, F.

(2005) Biochemistry 44: 13510-13521

Released	2005-10-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Ganglioside GM2 activator (protein)
Unique Ligands	IPA, MYR

Explore in 3D

2AGC \| pdb_00002agc	Download File View File

Crystal Structure of mouse GM2- activator Protein

Wright, C.S., Mi, L.Z., Lee, S., Rastinejad, F.

(2005) Biochemistry 44: 13510-13521

Released	2005-10-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	Ganglioside GM2 activator (protein)
Unique Ligands	DAO, MYR

Explore in 3D

2F66 \| pdb_00002f66	Download File View File

Structure of the ESCRT-I endosomal trafficking complex

Kostelansky, M.S., Lee, S., Kim, J., Hurley, J.H.

(2006) Cell 125: 113-126

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Protein SRN2 (protein) Suppressor protein STP22 of temperature-sensitive alpha-factor receptor and arginine permease (protein) Vacuolar protein sorting-associated protein VPS28 (protein)
Unique Ligands	SO4

Explore in 3D

2F6M \| pdb_00002f6m	Download File View File

Structure of a Vps23-C:Vps28-N subcomplex

Kostelansky, M.S., Lee, S., Kim, J., Hurley, J.H.

(2006) Cell 125: 113-126

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Suppressor protein STP22 of temperature-sensitive alpha-factor receptor and arginine permease (protein) Vacuolar protein sorting-associated protein VPS28 (protein)
Unique Ligands	DDQ, MG

Explore in 3D

2FID \| pdb_00002fid	Download File View File

Crystal Structure of a Bovine Rabex-5 fragment complexed with ubiquitin

Lee, S., Hurley, J.H.

(2006) Nat Struct Mol Biol 13: 264-271

Released	2006-02-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bos taurus
Macromolecule	Rab5 GDP/GTP exchange factor (protein) Ubiquitin (protein)
Unique Ligands	ZN

Explore in 3D

2FIF \| pdb_00002fif	Download File View File

Crystal Structure of a Bovine Rabex-5 fragment complexed with ubiquitin

Lee, S., Hurley, J.H.

(2006) Nat Struct Mol Biol 13: 264-271

Released	2006-02-07
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Bos taurus
Macromolecule	Rab5 GDP/GTP exchange factor (protein) Ubiquitin (protein)
Unique Ligands	SO4, ZN

1 to 25 of 310 Structures

Page 1 of 13

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1B66 | pdb_00001b66

1B6Z | pdb_00001b6z

1C3G | pdb_00001c3g

1C98 | pdb_00001c98

1C9A | pdb_00001c9a

1F0D | pdb_00001f0d

1F0E | pdb_00001f0e

1F0F | pdb_00001f0f

1F0G | pdb_00001f0g

1F0H | pdb_00001f0h

1IA5 | pdb_00001ia5

1P7G | pdb_00001p7g

1QVR | pdb_00001qvr

1SVP | pdb_00001svp

1WYK | pdb_00001wyk

1YD8 | pdb_00001yd8

2AF9 | pdb_00002af9

2AG2 | pdb_00002ag2

2AG4 | pdb_00002ag4

2AG9 | pdb_00002ag9

2AGC | pdb_00002agc

2F66 | pdb_00002f66

2F6M | pdb_00002f6m

2FID | pdb_00002fid

2FIF | pdb_00002fif