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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Nitta, R."

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Search Summary

This query matches 39 Structures.

Refinements

Structure Determination Methodology

experimental (39)

Scientific Name of Source Organism

	Mus musculus (22)
	Sus scrofa (7)
	Homo sapiens (6)
	Drosophila melanogaster (5)
	Rattus norvegicus (5)
	Bos taurus (4)
	Caenorhabditis elegans (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (39)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (28)
	ELECTRON MICROSCOPY (11)

Polymer Entity Type

Protein (39)

Refinement Resolution (Å)

	1.5 - 2.0 (8)
	2.0 - 2.5 (9)
	2.5 - 3.0 (8)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)
	> 4.5 (11)

Release Date

	2000 - 2004 (6)
	2005 - 2009 (5)
	2010 - 2014 (3)
	2015 - 2019 (20)
	2020 - 2024 (5)

Enzyme Classification Name

Hydrolases (20)

Symmetry Type

	Asymmetric (29)
	Dihedral (5)
	Helical (4)
	Cyclic (2)

SCOP Classification

	Alpha and beta proteins (a/b) (14)
	Artifacts (5)

AllSelected

1 to 25 of 39 Structures

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1V8J \| pdb_00001v8j	Download File View File

The Crystal Structure of the Minimal Functional Domain of the Microtubule Destabilizer KIF2C Complexed with Mg-ADP

Ogawa, T., Nitta, R., Okada, Y., Hirokawa, N.

(2004) Cell 116: 591-602

Released	2004-03-02
Method	X-RAY DIFFRACTION 3.24 Å
Organisms	Mus musculus
Macromolecule	Kinesin-like protein KIF2C (protein)
Unique Ligands	ADP, MG

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1V8K \| pdb_00001v8k	Download File View File

The Crystal Structure of the Minimal Functional Domain of the Microtubule Destabilizer KIF2C Complexed with Mg-AMPPNP

Ogawa, T., Nitta, R., Okada, Y., Hirokawa, N.

(2004) Cell 116: 591-602

Released	2004-03-02
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mus musculus
Macromolecule	Kinesin-like protein KIF2C (protein)
Unique Ligands	ANP, MG

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1VFV \| pdb_00001vfv	Download File View File

Crystal Structure of the Kif1A Motor Domain Complexed With Mg-AMPPNP

Nitta, R., Kikkawa, M., Okada, Y., Hirokawa, N.

(2004) Science 305: 678-683

Released	2004-08-10
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (Fusion protein consisting of Kinesin-like protein KIF1A, Kinesin heavy chain isoform 5C and A HIS TAG (protein)
Unique Ligands	ANP, MG

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1VFW \| pdb_00001vfw	Download File View File

Crystal Structure of the Kif1A Motor Domain Complexed With Mg-AMPPNP

Nitta, R., Kikkawa, M., Okada, Y., Hirokawa, N.

(2004) Science 305: 678-683

Released	2004-08-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (Fusion protein consisting of Kinesin-like protein KIF1A, Kinesin heavy chain isoform 5C and A HIS TAG (protein)
Unique Ligands	ANP, MG

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1VFX \| pdb_00001vfx	Download File View File

Crystal Structure of the Kif1A Motor Domain Complexed With ADP-Mg-AlFx

Nitta, R., Kikkawa, M., Okada, Y., Hirokawa, N.

(2004) Science 305: 678-683

Released	2004-08-10
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (Fusion protein consisting of Kinesin-like protein KIF1A, Kinesin heavy chain isoform 5C and A HIS TAG (protein)
Unique Ligands	ADP, AF3, MG, TRS

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1VFZ \| pdb_00001vfz	Download File View File

Crystal Structure of the Kif1A Motor Domain Complexed With ADP-Mg-VO4

Nitta, R., Kikkawa, M., Okada, Y., Hirokawa, N.

(2004) Science 305: 678-683

Released	2004-08-10
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (Fusion protein consisting of Kinesin-like protein KIF1A, Kinesin heavy chain isoform 5C and A HIS TAG (protein)
Unique Ligands	ADP, MG, VO4

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2ZFI \| pdb_00002zfi	Download File View File

Crystal Structure of the Kif1A Motor Domain Before Mg Release

Nitta, R., Okada, Y., Hirokawa, N.

(2008) Nat Struct Mol Biol 15: 1067-1075

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Mus musculus
Macromolecule	Kinesin-like protein KIF1A, Kinesin heavy chain isoform 5C (protein)
Unique Ligands	ADP, MG

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2ZFJ \| pdb_00002zfj	Download File View File

Crystal Structure of the Kif1A Motor Domain during Mg release: Mg-releasing Transition-1

Nitta, R., Okada, Y., Hirokawa, N.

(2008) Nat Struct Mol Biol 15: 1067-1075

Released	2008-09-23
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Mus musculus
Macromolecule	Kinesin-like protein KIF1A, Kinesin heavy chain isoform 5C (protein)
Unique Ligands	ADP, MG

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2ZFK \| pdb_00002zfk	Download File View File

Crystal Structure of the Kif1A Motor Domain during Mg release: Mg-releasing Transition-2

Nitta, R., Okada, Y., Hirokawa, N.

(2008) Nat Struct Mol Biol 15: 1067-1075

Released	2008-09-23
Method	X-RAY DIFFRACTION 3.61 Å
Organisms	Mus musculus
Macromolecule	Kinesin-like protein KIF1A, Kinesin heavy chain isoform 5C (protein)
Unique Ligands	ADP, MG, TRS

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2ZFL \| pdb_00002zfl	Download File View File

Crystal Structure of the Kif1A Motor Domain during Mg release: Mg-releasing Transition-3

Nitta, R., Okada, Y., Hirokawa, N.

(2008) Nat Struct Mol Biol 15: 1067-1075

Released	2008-09-23
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mus musculus
Macromolecule	Kinesin-like protein KIF1A, Kinesin heavy chain isoform 5C (protein)
Unique Ligands	ADP

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2ZFM \| pdb_00002zfm	Download File View File

Crystal Structure of the Kif1A Motor Domain After Mg Release

Nitta, R., Okada, Y., Hirokawa, N.

(2008) Nat Struct Mol Biol 15: 1067-1075

Released	2008-09-23
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Mus musculus
Macromolecule	Kinesin-like protein KIF1A, Kinesin heavy chain isoform 5C (protein)
Unique Ligands	ADP

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3J6H \| pdb_00003j6h	Download File View File

Nucleotide-free Kinesin motor domain complexed with GMPCPP-microtubule

Morikawa, M., Yajima, H., Nitta, R., Inoue, S., Ogura, T., Sato, C., Hirokawa, N.

(2015) EMBO J

Released	2015-04-01
Method	ELECTRON MICROSCOPY 8.1 Å
Organisms	Mus musculus Sus scrofa
Macromolecule	Kinesin heavy chain isoform 5C (protein) Tubulin alpha-1A chain (protein) Tubulin beta chain (protein)
Unique Ligands	G2P, GTP, MG, SO4

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3J7I \| pdb_00003j7i	Download File View File

Structure of alpha- and beta- tubulin in GMPCPP-microtubules

Yajima, H., Ogura, T., Nitta, R., Okada, Y., Sato, C., Hirokawa, N.

(2012) J Cell Biol 198: 315-322

Released	2014-12-10
Method	ELECTRON MICROSCOPY 8.9 Å
Organisms	Sus scrofa
Macromolecule	Tubulin alpha-1A chain (protein) Tubulin beta chain (protein)
Unique Ligands	GTP, MG

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3WRD \| pdb_00003wrd	Download File View File

Crystal Structure of the KIF5C Motor Domain Without Any Nucleotide

Inoue, S., Nitta, R., Hirokawa, N.

(2015) EMBO J 34: 1270-1286

Released	2015-04-01
Method	X-RAY DIFFRACTION 2.86 Å
Organisms	Mus musculus
Macromolecule	Kinesin heavy chain isoform 5C (protein)
Unique Ligands	SO4

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3X2T \| pdb_00003x2t	Download File View File

Crystal Structure of the KIF5C Motor Domain With ADP

Inoue, S., Nitta, R., Hirokawa, N.

(2015) EMBO J 34: 1270-1286

Released	2015-04-01
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mus musculus
Macromolecule	Kinesin heavy chain isoform 5C (protein)
Unique Ligands	ADP

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3ZFC \| pdb_00003zfc	Download File View File

Crystal Structure of the Kif4 Motor Domain Complexed With Mg-AMPPNP

Chang, Q., Nitta, R., Inoue, S., Hirokawa, N.

(2013) J Mol Biology 425: 1869

Released	2013-03-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus
Macromolecule	CHROMOSOME-ASSOCIATED KINESIN KIF4 (protein)
Unique Ligands	ANP, MG

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3ZFD \| pdb_00003zfd	Download File View File

Crystal Structure of the Kif4 Motor Domain Complexed With Mg-AMPPNP

Chang, Q., Nitta, R., Inoue, S., Hirokawa, N.

(2013) J Mol Biology 425: 1869

Released	2013-03-20
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Mus musculus
Macromolecule	CHROMOSOME-ASSOCIATED KINESIN KIF4 (protein)
Unique Ligands	ANP, MG

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5GSY \| pdb_00005gsy	Download File View File

Kinesin-8 motor, KIF19A, in the nucleotide-free state complexed with GDP-taxol microtubule

Morikawa, M., Nitta, R., Yajima, H., Shigematsu, H., Kikkawa, M., Hirokawa, N.

(2016) Elife 5:

Released	2016-09-28
Method	ELECTRON MICROSCOPY 7 Å
Organisms	Mus musculus
Macromolecule	Kinesin-like protein KIF19 (protein)

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5GSZ \| pdb_00005gsz	Download File View File

Crystal Structure of the KIF19A Motor Domain Complexed with Mg-ADP

Wang, D., Nitta, R., Hirokawa, N.

(2016) Elife 5:

Released	2016-09-28
Method	X-RAY DIFFRACTION 2.72 Å
Organisms	Mus musculus
Macromolecule	Kinesin-like protein KIF19 (protein)
Unique Ligands	ADP, MG

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5HLE \| pdb_00005hle	Download File View File

Structural basis of backwards motion in kinesin-14: minus-end directed nKn664 in the ADP state

Nitta, R.

To be published

Released	2017-01-25
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Drosophila melanogaster Rattus norvegicus
Macromolecule	Protein claret segregational,Minus-end kinesin-1/kinesin-14,Protein claret segregational (protein)
Unique Ligands	ADP, MG

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5HNW \| pdb_00005hnw	Download File View File

Structural basis of backwards motion in kinesin-14: minus-end directed nKn664 in the AMPPNP state

Shigematsu, H., Yokoyama, T., Kikkawa, M., Shirouzu, M., Nitta, R.

(2016) Structure 24: 1322-1334

Released	2016-08-10
Method	ELECTRON MICROSCOPY 6.6 Å
Organisms	Bos taurus Drosophila melanogaster Rattus norvegicus
Macromolecule	Protein claret segregational,KINESIN HEAVY CHAIN ISOFORM 5C (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	ANP, GDP, GTP, MG, TA1

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5HNX \| pdb_00005hnx	Download File View File

Structural basis of backwards motion in kinesin-14: minus-end directed nKn664 in the nucleotide-free state

Shigematsu, H., Yokoyama, T., Kikkawa, M., Shirouzu, M., Nitta, R.

(2016) Structure 24: 1322-1334

Released	2016-08-10
Method	ELECTRON MICROSCOPY 6.6 Å
Organisms	Bos taurus Drosophila melanogaster Rattus norvegicus
Macromolecule	Protein claret segregational,kinesin-1/kinesin-14,Protein claret segregational (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	GDP, GTP, MG, TA1

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5HNY \| pdb_00005hny	Download File View File

Structural basis of backwards motion in kinesin-14: plus-end directed nKn669 in the AMPPNP state

Shigematsu, H., Yokoyama, T., Kikkawa, M., Shirouzu, M., Nitta, R.

(2016) Structure 24: 1322-1334

Released	2016-08-10
Method	ELECTRON MICROSCOPY 6.3 Å
Organisms	Bos taurus Drosophila melanogaster Rattus norvegicus
Macromolecule	Protein claret segregational, Kinesin-1/Kinesin-14, Protein claret segregational (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	ANP, GDP, GTP, MG, TA1

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5HNZ \| pdb_00005hnz	Download File View File

Structural basis of backwards motion in kinesin-14: plus-end directed nKn669 in the nucleotide-free state

Shigematsu, H., Yokoyama, T., Kikkawa, M., Shirouzu, M., Nitta, R.

(2016) Structure 24: 1322-1334

Released	2016-08-10
Method	ELECTRON MICROSCOPY 5.8 Å
Organisms	Bos taurus Drosophila melanogaster Rattus norvegicus
Macromolecule	Protein claret segregational,Protein claret segregational,Plus-end directed kinesin-1/kinesin-14,Protein claret segregational,Protein claret segregational (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	GDP, GTP, MG, TA1