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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Reimer, J.M."

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Escherichia coli (7)
	Thermus thermophilus (5)
	Homo sapiens (4)
	Saccharomyces cerevisiae (1)
	Thermus thermophilus HB8 (1)

Taxonomy

	Bacteria (8)
	Eukaryota (5)

Experimental Method

	X-RAY DIFFRACTION (7)
	SOLUTION NMR (4)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (13)
	RNA (7)

Refinement Resolution (Å)

	2.0 - 2.5 (2)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)
	4.0 - 4.5 (2)
	> 4.5 (2)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (2)
	2010 - 2014 (7)

Enzyme Classification Name

Hydrolases (3)

Symmetry Type

	Asymmetric (11)
	Cyclic (1)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (4)
	All beta proteins (2)

AllSelected

1 to 13 of 13 Structures

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1CYU \| pdb_00001cyu	Download File View File

SOLUTION NMR STRUCTURE OF RECOMBINANT HUMAN CYSTATIN A UNDER THE CONDITION OF PH 3.8 AND 310K

Tate, S., Tate, N.U., Ushioda, T., Samejima, T., Kainosho, M.

(1995) Biochemistry 34: 14637-14648

Released	1995-12-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CYSTATIN A (protein)

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1CYV \| pdb_00001cyv	Download File View File

SOLUTION NMR STRUCTURE OF RECOMBINANT HUMAN CYSTATIN A UNDER THE CONDITION OF PH 3.8 AND 310K

Tate, S., Tate, N.U., Ushioda, T., Samejima, T., Kainosho, M.

(1995) Biochemistry 34: 14637-14648

Released	1995-12-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CYSTATIN A (protein)

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1GD3 \| pdb_00001gd3	Download File View File

refined solution structure of human cystatin A

Shimba, N., Kariya, E., Tate, S., Kaji, H., Kainosho, M.

(2000) J Struct Funct Genomics 1: 26-42

Released	2001-09-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CYSTATIN A (protein)

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1GD4 \| pdb_00001gd4	Download File View File

SOLUTION STRUCTURE OF P25S CYSTATIN A

Shimba, N., Kariya, E., Tate, S., Kaji, H., Kainosho, M.

(2000) J Struct Funct Genomics 1: 26-42

Released	2001-09-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CYSTATIN A (protein)

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1YPP \| pdb_00001ypp	Download File View File

ACID ANHYDRIDE HYDROLASE

Harutyunyan, E.H., Kuranova, I.P., Lamzin, V.S., Dauter, Z., Wilson, K.S.

(1996) Eur J Biochem 239: 220-228

Released	1996-12-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	INORGANIC PYROPHOSPHATASE (protein)
Unique Ligands	MN, PO4

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2PRD \| pdb_00002prd	Download File View File

CRYSTAL STRUCTURE OF INORGANIC PYROPHOSPHATASE FROM THERMUS THERMOPHILUS

Teplyakov, A.

(1994) Protein Sci 3: 1098-1107

Released	1995-10-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	PYROPHOSPHATE PHOSPHOHYDROLASE (protein)
Unique Ligands	SO4

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3J0D \| pdb_00003j0d	Download File View File

Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex

Yokoyama, T., Shaikh, T.R., Iwakura, N., Kaji, H., Kaji, A., Agrawal, R.K.

(2012) EMBO J 31: 1836-1846

Released	2012-04-25
Method	ELECTRON MICROSCOPY 11.1 Å
Organisms	Escherichia coli Thermus thermophilus
Macromolecule	Unique protein chains: 3 Unique nucleic acid chains: 8

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3J0E \| pdb_00003j0e	Download File View File

Models for the T. thermophilus ribosome recycling factor and the E. coli elongation factor G bound to the E. coli post-termination complex

Yokoyama, T., Shaikh, T.R., Iwakura, N., Kaji, H., Kaji, A., Agrawal, R.K.

(2012) EMBO J 31: 1836-1846

Released	2012-04-25
Method	ELECTRON MICROSCOPY 9.9 Å
Organisms	Escherichia coli Thermus thermophilus
Macromolecule	Unique protein chains: 3 Unique nucleic acid chains: 6

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4V52 \| pdb_00004v52	Download File View File

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Borovinskaya, M.A., Pai, R.D., Zhang, W., Schuwirth, B.-S., Holton, J.M., Hirokawa, G., Kaji, H., Kaji, A., Cate, J.H.D.

(2007) Nat Struct Mol Biol 14: 727-732

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.21 Å
Organisms	Escherichia coli
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 3
Unique Ligands	MG, NMY, ZN

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4V53 \| pdb_00004v53	Download File View File

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Borovinskaya, M.A., Pai, R.D., Zhang, W., Schuwirth, B.-S., Holton, J.M., Hirokawa, G., Kaji, H., Kaji, A., Cate, J.H.D.

(2007) Nat Struct Mol Biol 14: 727-732

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.54 Å
Organisms	Escherichia coli
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 3
Unique Ligands	LLL, MG, ZN

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4V54 \| pdb_00004v54	Download File View File

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Borovinskaya, M.A., Pai, R.D., Zhang, W., Schuwirth, B.-S., Holton, J.M., Hirokawa, G., Kaji, H., Kaji, A., Cate, J.H.D.

(2007) Nat Struct Mol Biol 14: 727-732

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia coli Thermus thermophilus
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

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4V55 \| pdb_00004v55	Download File View File

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Borovinskaya, M.A., Pai, R.D., Zhang, W., Schuwirth, B.-S., Holton, J.M., Hirokawa, G., Kaji, H., Kaji, A., Cate, J.H.D.

(2007) Nat Struct Mol Biol 14: 727-732

Released	2014-07-09
Method	X-RAY DIFFRACTION 4 Å
Organisms	Escherichia coli Thermus thermophilus
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 3
Unique Ligands	LLL, MG, ZN

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4V5Y \| pdb_00004v5y	Download File View File

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Borovinskaya, M.A., Pai, R.D., Zhang, W., Schuwirth, B.-S., Holton, J.M., Hirokawa, G., Kaji, H., Kaji, A., Cate, J.H.D.

(2007) Nat Struct Mol Biol 14: 727-732

Released	2014-07-09
Method	X-RAY DIFFRACTION 4.45 Å
Organisms	Escherichia coli Thermus thermophilus
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 3
Unique Ligands	MG, PAR, ZN

1 to 13 of 13 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1CYU | pdb_00001cyu

SOLUTION NMR STRUCTURE OF RECOMBINANT HUMAN CYSTATIN A UNDER THE CONDITION OF PH 3.8 AND 310K

1CYV | pdb_00001cyv

SOLUTION NMR STRUCTURE OF RECOMBINANT HUMAN CYSTATIN A UNDER THE CONDITION OF PH 3.8 AND 310K

1GD3 | pdb_00001gd3

refined solution structure of human cystatin A

1GD4 | pdb_00001gd4

SOLUTION STRUCTURE OF P25S CYSTATIN A

1YPP | pdb_00001ypp

ACID ANHYDRIDE HYDROLASE

2PRD | pdb_00002prd

CRYSTAL STRUCTURE OF INORGANIC PYROPHOSPHATASE FROM THERMUS THERMOPHILUS

3J0D | pdb_00003j0d

Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex

3J0E | pdb_00003j0e

Models for the T. thermophilus ribosome recycling factor and the E. coli elongation factor G bound to the E. coli post-termination complex

4V52 | pdb_00004v52

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

4V53 | pdb_00004v53

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

4V54 | pdb_00004v54

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

4V55 | pdb_00004v55

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

4V5Y | pdb_00004v5y

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1CYU | pdb_00001cyu

1CYV | pdb_00001cyv

1GD3 | pdb_00001gd3

1GD4 | pdb_00001gd4

1YPP | pdb_00001ypp

2PRD | pdb_00002prd

3J0D | pdb_00003j0d

3J0E | pdb_00003j0e

4V52 | pdb_00004v52

4V53 | pdb_00004v53

4V54 | pdb_00004v54

4V55 | pdb_00004v55

4V5Y | pdb_00004v5y