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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Saio, T."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Escherichia coli K-12 (8)
	Escherichia coli O157:H7 (6)
	Escherichia coli str. K-12 substr. MC4100 (3)
	Homo sapiens (3)
	Escherichia coli 55989 (1)
	Escherichia coli BW2952 (1)
	Oryza sativa (1)
	Rattus norvegicus (1)
	Streptococcus sp. 'group G (1)

Taxonomy

	Bacteria (13)
	Eukaryota (5)

Experimental Method

SOLUTION NMR (18)

Polymer Entity Type

Protein (18)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (5)
	2015 - 2019 (11)

Enzyme Classification Name

	Hydrolases (6)
	Isomerases (6)
	Transferases (1)

Symmetry Type

	Asymmetric (16)
	Cyclic (2)

SCOP Classification

	Alpha and beta proteins (a+b) (13)
	All alpha proteins (6)
	Artifacts (1)

AllSelected

1 to 18 of 18 Structures

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2JNV \| pdb_00002jnv	Download File View File

Solution structure of C-terminal domain of NifU-like protein from Oryza sativa

Saio, T., Ogura, K., Kumeta, H., Yokochi, M., Katoh, S., Katoh, E., Inagaki, F., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2007) J Biochem 142: 113-121

Released	2007-12-18
Method	SOLUTION NMR
Organisms	Oryza sativa
Macromolecule	NifU-like protein 1, chloroplast (protein)

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2KTR \| pdb_00002ktr	Download File View File

NMR structure of p62 PB1 dimer determined based on PCS

Saio, T., Yokochi, M., Kumeta, H., Inagaki, F.

(2010) J Biomol NMR 46: 271-280

Released	2010-04-07
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	Sequestosome-1 (protein)
Unique Ligands	TB

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2MLX \| pdb_00002mlx	Download File View File

NMR structure of E. coli Trigger Factor in complex with unfolded PhoA220-310

Saio, T., Guan, X., Rossi, P., Economou, A., Kalodimos, C.G.

(2014) Science 344: 1250494-1250494

Released	2014-05-21
Method	SOLUTION NMR
Organisms	Escherichia coli str. K-12 substr. MC4100
Macromolecule	Alkaline phosphatase (protein) Trigger factor (protein)

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2MLY \| pdb_00002mly	Download File View File

NMR structure of E. coli Trigger Factor in complex with unfolded PhoA1-150

Saio, T., Guan, X., Rossi, P., Economou, A., Kalodimos, C.G.

(2014) Science 344: 1250494-1250494

Released	2014-05-21
Method	SOLUTION NMR
Organisms	Escherichia coli str. K-12 substr. MC4100
Macromolecule	Alkaline phosphatase (protein) Trigger factor (protein)

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2MLZ \| pdb_00002mlz	Download File View File

NMR structure of E. coli Trigger Factor in complex with unfolded PhoA365-471

Saio, T., Guan, X., Rossi, P., Economou, A., Kalodimos, C.G.

(2014) Science 344: 1250494-1250494

Released	2014-05-21
Method	SOLUTION NMR
Organisms	Escherichia coli K-12 Escherichia coli str. K-12 substr. MC4100
Macromolecule	Alkaline phosphatase (protein) Trigger factor (protein)

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2N9I \| pdb_00002n9i	Download File View File

Solution structure of reduced human cytochrome c

Imai, M., Saio, T., Kumeta, H., Uchida, T., Inagaki, F., Ishimori, K.

(2016) Biochem Biophys Res Commun 469: 978-984

Released	2016-02-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Cytochrome c (protein)
Unique Ligands	HEC

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2N9J \| pdb_00002n9j	Download File View File

Solution structure of oxidized human cytochrome c

Imai, M., Saio, T., Kumeta, H., Uchida, T., Inagaki, F., Ishimori, K.

(2016) Biochem Biophys Res Commun 469: 978-984

Released	2016-02-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Cytochrome c (protein)
Unique Ligands	HEC

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2RPV \| pdb_00002rpv	Download File View File

Solution Structure of GB1 with LBT probe

Saio, T., Ogura, K., Yokochi, M., Kobashigawa, Y., Inagaki, F.

(2009) J Biomol NMR 44: 157-166

Released	2009-09-15
Method	SOLUTION NMR
Organisms	Streptococcus sp. 'group G
Macromolecule	Immunoglobulin G-binding protein G (protein)
Unique Ligands	LA

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2RSE \| pdb_00002rse	Download File View File

NMR structure of FKBP12-mTOR FRB domain-rapamycin complex structure determined based on PCS

Kobashigawa, Y., Ushio, M., Saio, T., Inagaki, F.

(2012) J Biomol NMR 53: 53-63

Released	2012-05-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1A (protein) Serine/threonine-protein kinase mTOR (protein)
Unique Ligands	TB

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5JTL \| pdb_00005jtl	Download File View File

The structure of chaperone SecB in complex with unstructured proPhoA

Huang, C., Saio, T., Rossi, P., Kalodimos, C.G.

(2016) Nature 537: 202-206

Released	2016-08-24
Method	SOLUTION NMR
Organisms	Escherichia coli K-12 Escherichia coli O157:H7
Macromolecule	Alkaline phosphatase (protein) Protein-export protein SecB (protein)

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5JTM \| pdb_00005jtm	Download File View File

The structure of chaperone SecB in complex with unstructured PhoA binding site a

Huang, C., Saio, T., Rossi, P., Kalodimos, C.G.

(2016) Nature 537: 202-206

Released	2016-08-24
Method	SOLUTION NMR
Organisms	Escherichia coli 55989 Escherichia coli K-12
Macromolecule	Alkaline phosphatase (protein) Protein-export protein SecB (protein)

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5JTN \| pdb_00005jtn	Download File View File

The structure of chaperone SecB in complex with unstructured proPhoA binding site c

Huang, C., Saio, T., Rossi, P., Kalodimos, C.G.

(2016) Nature 537: 202-206

Released	2016-08-24
Method	SOLUTION NMR
Organisms	Escherichia coli K-12 Escherichia coli O157:H7
Macromolecule	Alkaline phosphatase (protein) Protein-export protein SecB (protein)

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5JTO \| pdb_00005jto	Download File View File

The structure of chaperone SecB in complex with unstructured proPhoA binding site d

Huang, C., Saio, T., Rossi, P., Kalodimos, C.G.

(2016) Nature 537: 202-206

Released	2016-08-24
Method	SOLUTION NMR
Organisms	Escherichia coli K-12 Escherichia coli O157:H7
Macromolecule	Alkaline phosphatase (protein) Protein-export protein SecB (protein)

Explore in 3D

5JTP \| pdb_00005jtp	Download File View File

The structure of chaperone SecB in complex with unstructured proPhoA binding site e

Huang, C., Saio, T., Rossi, P., Kalodimos, C.G.

(2016) Nature 537: 202-206

Released	2016-08-24
Method	SOLUTION NMR
Organisms	Escherichia coli K-12 Escherichia coli O157:H7
Macromolecule	Alkaline phosphatase (protein) Protein-export protein SecB (protein)

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5JTQ \| pdb_00005jtq	Download File View File

The structure of chaperone SecB in complex with unstructured MBP binding site d

Huang, C., Saio, T., Rossi, P., Kalodimos, C.G.

(2016) Nature 537: 202-206

Released	2016-08-24
Method	SOLUTION NMR
Organisms	Escherichia coli O157:H7
Macromolecule	Maltose-binding periplasmic protein (protein) Protein-export protein SecB (protein)

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5JTR \| pdb_00005jtr	Download File View File

The structure of chaperone SecB in complex with unstructured MBP binding site e

Huang, C., Saio, T., Rossi, P., Kalodimos, C.G.

(2016) Nature 537: 202-206

Released	2016-08-24
Method	SOLUTION NMR
Organisms	Escherichia coli O157:H7
Macromolecule	Maltose-binding periplasmic protein (protein) Protein-export protein SecB (protein)

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5ZR0 \| pdb_00005zr0	Download File View File

Solution structure of peptidyl-prolyl cis/trans isomerase domain of Trigger Factor in complex with MBP

Kawagoe, S., Nakagawa, H., Kumeta, H., Ishimori, K., Saio, T.

(2018) J Biological Chem 293: 15095-15106

Released	2018-08-22
Method	SOLUTION NMR
Organisms	Escherichia coli BW2952 Escherichia coli K-12
Macromolecule	Maltose-binding periplasmic protein,Trigger factor (protein)

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6D6S \| pdb_00006d6s	Download File View File

Solution structure of Trigger Factor dimer

Saio, T., Kawagoe, S., Ishimori, K., Kalodimos, C.G.

(2018) Elife 7:

Released	2018-06-13
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	Trigger factor (protein)

1 to 18 of 18 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2JNV | pdb_00002jnv

Solution structure of C-terminal domain of NifU-like protein from Oryza sativa

2KTR | pdb_00002ktr

NMR structure of p62 PB1 dimer determined based on PCS

2MLX | pdb_00002mlx

NMR structure of E. coli Trigger Factor in complex with unfolded PhoA220-310

2MLY | pdb_00002mly

NMR structure of E. coli Trigger Factor in complex with unfolded PhoA1-150

2MLZ | pdb_00002mlz

NMR structure of E. coli Trigger Factor in complex with unfolded PhoA365-471

2N9I | pdb_00002n9i

Solution structure of reduced human cytochrome c

2N9J | pdb_00002n9j

Solution structure of oxidized human cytochrome c

2RPV | pdb_00002rpv

Solution Structure of GB1 with LBT probe

2RSE | pdb_00002rse

NMR structure of FKBP12-mTOR FRB domain-rapamycin complex structure determined based on PCS

5JTL | pdb_00005jtl

The structure of chaperone SecB in complex with unstructured proPhoA

5JTM | pdb_00005jtm

The structure of chaperone SecB in complex with unstructured PhoA binding site a

5JTN | pdb_00005jtn

The structure of chaperone SecB in complex with unstructured proPhoA binding site c

5JTO | pdb_00005jto

The structure of chaperone SecB in complex with unstructured proPhoA binding site d

5JTP | pdb_00005jtp

The structure of chaperone SecB in complex with unstructured proPhoA binding site e

5JTQ | pdb_00005jtq

The structure of chaperone SecB in complex with unstructured MBP binding site d

5JTR | pdb_00005jtr

The structure of chaperone SecB in complex with unstructured MBP binding site e

5ZR0 | pdb_00005zr0

Solution structure of peptidyl-prolyl cis/trans isomerase domain of Trigger Factor in complex with MBP

6D6S | pdb_00006d6s

Solution structure of Trigger Factor dimer

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2JNV | pdb_00002jnv

2KTR | pdb_00002ktr

2MLX | pdb_00002mlx

2MLY | pdb_00002mly

2MLZ | pdb_00002mlz

2N9I | pdb_00002n9i

2N9J | pdb_00002n9j

2RPV | pdb_00002rpv

2RSE | pdb_00002rse

5JTL | pdb_00005jtl

5JTM | pdb_00005jtm

5JTN | pdb_00005jtn

5JTO | pdb_00005jto

5JTP | pdb_00005jtp

5JTQ | pdb_00005jtq

5JTR | pdb_00005jtr

5ZR0 | pdb_00005zr0

6D6S | pdb_00006d6s