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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Suzuki, M."

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Search Summary

This query matches 217 Structures.

Refinements

Structure Determination Methodology

experimental (217)

Scientific Name of Source Organism

	Homo sapiens (79)
	Mus musculus (19)
	Gallus gallus (12)
	Thaumatococcus daniellii (12)
	Geobacillus thermodenitrificans NG80-2 (9)
	Alcaligenes faecalis (7)
	Bombyx mori (7)
	Equus caballus (5)
	Escherichia coli (5)
	Parengyodontium album (5)

More...

Taxonomy

	Eukaryota (161)
	Bacteria (49)
	Archaea (10)
	Eukaryota (eukaryotes) (2)
	Riboviria (1)
	Viruses incertae sedis (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (207)
	SOLUTION NMR (10)
	NEUTRON DIFFRACTION (1)

Polymer Entity Type

	Protein (217)
	DNA (2)

Refinement Resolution (Å)

	0.5 - 1.0 (8)
	1.0 - 1.5 (27)
	1.5 - 2.0 (71)
	2.0 - 2.5 (71)
	2.5 - 3.0 (20)
	3.0 - 3.5 (7)
	3.5 - 4.0 (4)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (20)
	2005 - 2009 (35)
	2010 - 2014 (51)
	2015 - 2019 (73)
	2020 - 2024 (33)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (57)
	Transferases (33)
	Oxidoreductases (38)
	Isomerases (8)
	Lyases (6)
	Ligases (4)

Membrane Protein Annotation

	OPM (14)
	PDBTM (8)
	mpstruc (8)
	MemProtMD (6)

Symmetry Type

	Asymmetric (157)
	Cyclic (52)
	Dihedral (11)
	Octahedral (5)
	Helical (2)
	Icosahedral (1)

SCOP Classification

	All beta proteins (52)
	Alpha and beta proteins (a+b) (39)
	Alpha and beta proteins (a/b) (30)
	All alpha proteins (30)
	Artifacts (20)
	Small proteins (11)
	Membrane and cell surface proteins and peptides (3)

AllSelected

1 to 25 of 217 Structures

Page 1 of 9

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1F16 \| pdb_00001f16	Download File View File

SOLUTION STRUCTURE OF A PRO-APOPTOTIC PROTEIN BAX

Suzuki, M., Youle, R.J., Tjandra, N.

(2000) Cell 103: 645-654

Released	2000-11-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (APOPTOSIS REGULATOR BAX, MEMBRANE ISOFORM ALPHA) (protein)

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1FIM \| pdb_00001fim	Download File View File

MACROPHAGE MIGRATION INHIBITORY FACTOR

Suzuki, M., Sugimoto, H., Nakagawa, A., Tanaka, I.

(1996) Nat Struct Biol 3: 259-266

Released	1996-07-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Rattus norvegicus
Macromolecule	MACROPHAGE MIGRATION INHIBITORY FACTOR (protein)

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1GCC \| pdb_00001gcc	Download File View File

SOLUTION NMR STRUCTURE OF THE COMPLEX OF GCC-BOX BINDING DOMAIN OF ATERF1 AND GCC-BOX DNA, MINIMIZED AVERAGE STRUCTURE

Yamasaki, K., Allen, M.D., Ohme-Takagi, M., Tateno, M., Suzuki, M.

(1998) EMBO J 17: 5484-5496

Released	1999-03-23
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 (protein) DNA (5'-D(GPCPTPGPGPCPGPGPCPTPA)-3') (nucleic acid) DNA (5'-D(TPAPGPCPCPGPCPCPAPGPC)-3') (nucleic acid)

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1HI2 \| pdb_00001hi2	Download File View File

Eosinophil-derived Neurotoxin (EDN) - Sulphate Complex

Leonidas, D.D., Boix, E., Prill, R., Suzuki, M., Turton, R., Minson, K., Swaminathan, G.J., Youle, R.J., Acharya, K.R.

(2001) J Biological Chem 276: 15009

Released	2001-05-31
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	EOSINOPHIL-DERIVED NEUROTOXIN (protein)
Unique Ligands	SO4

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1HI3 \| pdb_00001hi3	Download File View File

Eosinophil-derived Neurotoxin (EDN) - Adenosine 2'-5'-Diphosphate Complex

Leonidas, D.D., Boix, E., Prill, R., Suzuki, M., Turton, R., Minson, K., Swaminathan, G.J., Youle, R.J., Acharya, K.R.

(2001) J Biological Chem 276: 15009

Released	2001-05-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	EOSINOPHIL-DERIVED NEUROTOXIN (protein)
Unique Ligands	A2P

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1HI4 \| pdb_00001hi4	Download File View File

Eosinophil-derived Neurotoxin (EDN) - Adenosien-3'-5'-Diphosphate Complex

Leonidas, D.D., Boix, E., Prill, R., Suzuki, M., Turton, R., Minson, K., Swaminathan, G.J., Youle, R.J., Acharya, K.R.

(2001) J Biological Chem 276: 15009

Released	2001-05-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	EOSINOPHIL-DERIVED NEUROTOXIN (protein)
Unique Ligands	A3P

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1HI5 \| pdb_00001hi5	Download File View File

Eosinophil-derived Neurotoxin (EDN) - Adenosine-5'-Diphosphate Complex

Leonidas, D.D., Boix, E., Prill, R., Suzuki, M., Turton, R., Minson, K., Swaminathan, G.J., Youle, R.J., Acharya, K.R.

(2001) J Biological Chem 276: 15009

Released	2001-05-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	EOSINOPHIL-DERIVED NEUROTOXIN (protein)
Unique Ligands	ADP

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1ISP \| pdb_00001isp	Download File View File

Crystal structure of Bacillus subtilis lipase at 1.3A resolution

Kawasaki, K., Kondo, H., Suzuki, M., Ohgiya, S., Tsuda, S.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1168-1174

Released	2002-12-19
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Bacillus subtilis
Macromolecule	lipase (protein)
Unique Ligands	GOL

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1IU1 \| pdb_00001iu1	Download File View File

Crystal structure of human gamma1-adaptin ear domain

Nogi, T., Shiba, Y., Kawasaki, M., Shiba, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Takatsu, H., Nakayama, K., Wakatsuki, S.

(2002) Nat Struct Biol 9: 527-531

Released	2002-07-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	gamma1-adaptin (protein)

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1J2J \| pdb_00001j2j	Download File View File

Crystal structure of GGA1 GAT N-terminal region in complex with ARF1 GTP form

Shiba, T., Kawasaki, M., Takatsu, H., Nogi, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Nakayama, K., Wakatsuki, S.

(2003) Nat Struct Biol 10: 386-393

Released	2003-05-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	ADP-ribosylation factor 1 (protein) ADP-ribosylation factor binding protein GGA1 (protein)
Unique Ligands	GTP, IOD, MG

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1JWF \| pdb_00001jwf	Download File View File

Crystal Structure of human GGA1 VHS domain.

Shiba, T., Takatsu, H., Nogi, T., Matsugaki, N., Kawasaki, M., Igarashi, N., Suzuki, M., Kato, R., Earnest, T., Nakayama, K., Wakatsuki, S.

(2002) Nature 415: 937-941

Released	2002-03-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor binding protein GGA1 (protein)

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1JWG \| pdb_00001jwg	Download File View File

VHS Domain of human GGA1 complexed with cation-independent M6PR C-terminal Peptide

Shiba, T., Takatsu, H., Nogi, T., Matsugaki, N., Kawasaki, M., Igarashi, N., Suzuki, M., Kato, R., Earnest, T., Nakayama, K., Wakatsuki, S.

(2002) Nature 415: 937-941

Released	2002-03-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor binding protein GGA1 (protein) Cation-independent mannose-6-phosphate receptor (protein)
Unique Ligands	IOD

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1MP9 \| pdb_00001mp9	Download File View File

TBP from a mesothermophilic archaeon, Sulfolobus acidocaldarius

Koike, H., Kawashima-Ohya, Y., Yamasaki, T., Clowney, L., Katsuya, Y., Suzuki, M.

(2004) Structure 12: 157-168

Released	2003-11-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sulfolobus acidocaldarius
Macromolecule	TATA-binding protein (protein)

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1O3X \| pdb_00001o3x	Download File View File

Crystal structure of human GGA1 GAT domain

Shiba, T., Kawasaki, M., Takatsu, H., Nogi, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Nakayama, K., Wakatsuki, S.

(2003) Nat Struct Biol 10: 386-393

Released	2003-05-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor binding protein GGA1 (protein)

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1O3Y \| pdb_00001o3y	Download File View File

Crystal structure of mouse ARF1 (delta17-Q71L), GTP form

Shiba, T., Kawasaki, M., Takatsu, H., Nogi, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Nakayama, K., Wakatsuki, S.

(2003) Nat Struct Biol 10: 386-393

Released	2003-05-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mus musculus
Macromolecule	ADP-ribosylation factor 1 (protein)
Unique Ligands	GTP, MG

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1PC2 \| pdb_00001pc2	Download File View File

Solution structure of human mitochondria fission protein Fis1

Suzuki, M., Youle, R.J., Tjandra, N.

(2003) J Mol Biology 334: 445-458

Released	2003-12-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	mitochondria fission protein (protein)

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1RI7 \| pdb_00001ri7	Download File View File

crystal structure of a protein in the LRP/ASNC family from the hyperthermophilic archaeon Pyrococcus sp. OT3

Koike, H., Suzuki, M.

(2004) Proc Natl Acad Sci U S A 101: 2840-2845

Released	2004-03-09
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Putative transcriptional regulator (protein)

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1SQJ \| pdb_00001sqj	Download File View File

Crystal Structure Analysis of Oligoxyloglucan reducing-end-specific cellobiohydrolase (OXG-RCBH)

Yaoi, K., Kondo, H., Noro, N., Suzuki, M., Tsuda, S., Mitsuishi, Y.

(2004) Structure 12: 1209-1217

Released	2004-07-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Geotrichum sp. M128
Macromolecule	oligoxyloglucan reducing-end-specific cellobiohydrolase (protein)

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1UIZ \| pdb_00001uiz	Download File View File

Crystal Structure Of Macrophage Migration Inhibitory Factor From Xenopus Laevis.

Suzuki, M., Takamura, Y., Maeno, M., Tochinai, S., Iyaguchi, D., Tanaka, I., Nishihira, J., Ishibashi, T.

(2004) J Biological Chem 279: 21406-21414

Released	2004-05-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Xenopus laevis
Macromolecule	Macrophage Migration Inhibitory Factor (protein)

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1V3X \| pdb_00001v3x	Download File View File

Factor Xa in complex with the inhibitor 1-[6-methyl-4,5,6,7-tetrahydrothiazolo(5,4-c)pyridin-2-yl] carbonyl-2-carbamoyl-4-(6-chloronaphth-2-ylsulphonyl)piperazine

Suzuki, M.

(2004) J Med Chem 47: 5167-5182

Released	2004-11-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor X, HEAVY CHAIN (protein) Coagulation factor X, LIGHT CHAIN (protein)
Unique Ligands	CA, D76

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1V5C \| pdb_00001v5c	Download File View File

The crystal structure of the inactive form chitosanase from Bacillus sp. K17 at pH3.7

Adachi, W., Shimizu, S., Sunami, T., Fukazawa, T., Suzuki, M., Yatsunami, R., Nakamura, S., Takenaka, A.

(2004) J Mol Biology 343: 785-795

Released	2004-12-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus sp. (in: firmicutes)
Macromolecule	chitosanase (protein)
Unique Ligands	SO4

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1V5D \| pdb_00001v5d	Download File View File

The crystal structure of the active form chitosanase from Bacillus sp. K17 at pH6.4

Adachi, W., Shimizu, S., Sunami, T., Fukazawa, T., Suzuki, M., Yatsunami, R., Nakamura, S., Takenaka, A.

(2004) J Mol Biology 343: 785-795

Released	2004-12-07
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Bacillus sp. (in: firmicutes)
Macromolecule	chitosanase (protein)
Unique Ligands	PIN

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1WR6 \| pdb_00001wr6	Download File View File

Crystal structure of GGA3 GAT domain in complex with ubiquitin

Kawasaki, M., Shiba, T., Shiba, Y., Yamaguchi, Y., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Kato, K., Nakayama, K., Wakatsuki, S.

(2005) Genes Cells 10: 639-654

Released	2005-06-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	ADP-ribosylation factor binding protein GGA3 (protein) ubiquitin (protein)

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1WU1 \| pdb_00001wu1	Download File View File

Factor Xa in complex with the inhibitor 4-[(5-chloroindol-2-yl)sulfonyl]-2-(2-methylpropyl)-1-[[5-(pyridin-4-yl) pyrimidin-2-yl]carbonyl]piperazine

Suzuki, M.

(2005) Bioorg Med Chem 13: 3927-3954

Released	2005-11-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor X, heavy chain (protein) Coagulation factor X, light chain (protein)
Unique Ligands	CA, D91