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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Vahedi-Faridi, A."

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Search Summary

This query matches 39 Structures.

Refinements

Structure Determination Methodology

experimental (39)

Scientific Name of Source Organism

	Homo sapiens (11)
	Geobacillus stearothermophilus (9)
	Actinoplanes sp. SE50/110 (5)
	Rattus norvegicus (4)
	Streptomyces glaucescens (4)
	Mus musculus (3)
	Enterococcus casseliflavus (1)
	Epstein-Barr virus (strain B95-8) (1)
	Escherichia coli (1)
	Escherichia coli K-12 (1)

More...

Taxonomy

	Bacteria (22)
	Eukaryota (17)
	Eukaryota (eukaryotes) (7)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (38)
	ELECTRON CRYSTALLOGRAPHY (1)

Polymer Entity Type

Protein (39)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (15)
	2.0 - 2.5 (14)
	2.5 - 3.0 (4)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (19)
	2010 - 2014 (16)
	2015 - 2019 (2)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (9)
	Oxidoreductases (3)
	Transferases (3)

Membrane Protein Annotation

	OPM (3)
	PDBTM (3)
	MemProtMD (2)

Symmetry Type

	Asymmetric (29)
	Cyclic (11)

SCOP Classification

	Alpha and beta proteins (a/b) (15)
	Artifacts (9)
	All alpha proteins (3)
	Alpha and beta proteins (a+b) (3)
	All beta proteins (7)
	Membrane and cell surface proteins and peptides (1)
	Small proteins (1)

AllSelected

1 to 25 of 39 Structures

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1ROV \| pdb_00001rov	Download File View File

Lipoxygenase-3 Treated with Cumene Hydroperoxide

Vahedi-Faridi, A., Brault, P.A., Shah, P., Kim, Y.W., Dunham, W.R., Funk, M.O.

(2004) J Am Chem Soc 126: 2006-2015

Released	2004-03-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Glycine max
Macromolecule	Seed lipoxygenase-3 (protein)
Unique Ligands	FE

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2NYB \| pdb_00002nyb	Download File View File

Crystal structure of E.Coli Iron Superoxide Dismutase Q69E at 1.1 Angstrom resolution

Porta, J.C., Vahedi-Faridi, A., Borgstahl, G.E.O.

(2007) J Am Chem Soc 129: 9927-9940

Released	2006-12-05
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Escherichia coli
Macromolecule	Superoxide dismutase [FE] (protein)
Unique Ligands	FE2, O

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2OLJ \| pdb_00002olj	Download File View File

ABC Protein ArtP in complex with ADP/Mg2+

Thaben, P.F., Eckey, V., Scheffel, F., Saenger, W., Schneider, E., Vahedi-Faridi, A.

To be published

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Amino acid ABC transporter (protein)
Unique Ligands	ADP, GOL, MG

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2OLK \| pdb_00002olk	Download File View File

ABC Protein ArtP in complex with ADP-beta-S

Thaben, P.F., Eckey, V., Scheffel, F., Saenger, W., Schneider, E., Vahedi-Faridi, A.

To be published

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Amino acid ABC transporter (protein)
Unique Ligands	AT4

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2OUK \| pdb_00002ouk	Download File View File

ABC Protein ArtP in complex with Sulphate

Thaben, P.F., Eckey, V., Scheffel, F., Saenger, W., Schneider, E., Vahedi-Faridi, A.

To be published

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	protein ArtP (protein)
Unique Ligands	SO4

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2PR9 \| pdb_00002pr9	Download File View File

Mu2 adaptin subunit (AP50) of AP2 adaptor (second domain), complexed with GABAA receptor-gamma2 subunit-derived internalization peptide DEEYGYECL

Vahedi-Faridi, A., Haucke, V., Kittler, J.T., Kukhtina, V., Moss, S.J., Saenger, W., Chen, G.-J., Tretter, V., Smith, K., Yan, Z., McAinsh, K., Arancibia-Carcamo, L.

(2008) Proc Natl Acad Sci U S A 105: 3616-3621

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Rattus norvegicus
Macromolecule	AP-2 complex subunit mu-1 (protein) GABA(A) receptor subunit gamma-2 peptide (protein)

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2PVU \| pdb_00002pvu	Download File View File

Crystal structures of the arginine-, lysine-, histidine-binding protein ArtJ from the thermophilic bacterium Geobacillus stearothermophilus

Vahedi-Faridi, A., Scheffel, F., Eckey, V., Saenger, W., Schneider, E.

(2008) J Mol Biology 375: 448-459

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	ArtJ (protein)
Unique Ligands	LYS, SO4

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2Q0H \| pdb_00002q0h	Download File View File

ABC Protein ArtP in complex with ADP/Mg2+, ATP-gamma-S hydrolyzed

Thaben, P.F., Eckey, V., Scheffel, F., Saenger, W., Schneider, E., Vahedi-Faridi, A.

To be published

Released	2008-06-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	ArtP (protein)
Unique Ligands	ADP, GOL, MG

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2Q2A \| pdb_00002q2a	Download File View File

Crystal structures of the arginine-, lysine-, histidine-binding protein ArtJ from the thermophilic bacterium Geobacillus stearothermophilus

Vahedi-Faridi, A., Scheffel, F., Eckey, V., Saenger, W., Schneider, E.

(2008) J Mol Biology 375: 448-459

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	ArtJ (protein)
Unique Ligands	ARG, SO4

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2Q2C \| pdb_00002q2c	Download File View File

Crystal structures of the arginine-, lysine-, histidine-binding protein ArtJ from the thermophilic bacterium Geobacillus stearothermophilus

Vahedi-Faridi, A., Scheffel, F., Eckey, V., Saenger, W., Schneider, E.

(2008) J Mol Biology 375: 448-459

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	ArtJ (protein)
Unique Ligands	GOL, HIS, SO4

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2X3V \| pdb_00002x3v	Download File View File

Structure of The F-BAR Domain of Mouse Syndapin I

Ma, Q., Rao, Y., Vahedi-Faridi, A., Saenger, W., Haucke, V.

(2010) Proc Natl Acad Sci U S A 107: 8213

Released	2010-04-07
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Mus musculus
Macromolecule	PROTEIN KINASE C AND CASEIN KINASE SUBSTRATE IN NEURONS PROTEIN 1 (protein)

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2X3X \| pdb_00002x3x	Download File View File

structure of mouse syndapin I (crystal form 1)

Ma, Q., Rao, Y., Vahedi-Faridi, A., Saenger, W., Haucke, V.

(2010) Proc Natl Acad Sci U S A 107: 8213

Released	2010-04-07
Method	X-RAY DIFFRACTION 3.35 Å
Organisms	Mus musculus
Macromolecule	PROTEIN KINASE C AND CASEIN KINASE SUBSTRATE IN NEURONS PROTEIN 1 (protein)

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3BO8 \| pdb_00003bo8	Download File View File

The High Resolution Crystal Structure of HLA-A1 Complexed with the MAGE-A1 Peptide

Kumar, P., Vahedi-Faridi, A., Saenger, W., Ziegler, A., Uchanska-Ziegler, B.

(2009) Protein Sci 18: 37-49

Released	2008-12-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-1 alpha chain (protein) nonameric peptide from Melanoma-associated antigen 1 (protein)
Unique Ligands	GOL

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3BP4 \| pdb_00003bp4	Download File View File

The high resolution crystal structure of HLA-B*2705 in complex with a Cathepsin A signal sequence peptide pCatA

Kumar, P., Vahedi-Faridi, A., Saenger, W., Uchanska-Ziegler, B., Ziegler, A.

(2009) J Biological Chem 284: 29784-29797

Released	2008-12-23
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-27 alpha chain (protein) nonameric peptide from Lysosomal protective protein (protein)
Unique Ligands	GOL

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3BP7 \| pdb_00003bp7	Download File View File

The high resolution crystal structure of HLA-B*2709 in complex with a Cathepsin A signal sequence peptide, pCatA

Kumar, P., Vahedi-Faridi, A., Saenger, W., Uchanska-Ziegler, B., Ziegler, A.

(2009) J Biological Chem 284: 29784-29797

Released	2008-12-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-27 alpha chain (protein) nonameric peptide from Lysosomal protective protein (protein)
Unique Ligands	GOL

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3BVN \| pdb_00003bvn	Download File View File

High resolution crystal structure of HLA-B*1402 in complex with the latent membrane protein 2 peptide (LMP2) of Epstein-Barr virus

Kumar, P., Vahedi-Faridi, A., Saenger, W., Uchanska-Ziegler, B., Ziegler, A.

(2009) J Biological Chem 284: 29784-29797

Released	2009-02-03
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Epstein-Barr virus (strain B95-8) Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B*1402 alpha chain (protein) Latent membrane protein 2 peptide (protein)

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3BXN \| pdb_00003bxn	Download File View File

The high resolution crystal structure of HLA-B*1402 complexed with a Cathepsin A signal sequence peptide, pCatA

Kumar, P., Vahedi-Faridi, A., Saenger, W., Uchanska-Ziegler, B., Ziegler, A.

(2009) J Biological Chem 284: 29784-29797

Released	2009-02-03
Method	X-RAY DIFFRACTION 1.864 Å
Organisms	Homo sapiens
Macromolecule	Cathepsin A signal sequence octapeptide (protein) HLA-B*1402 extracellular domain (protein) beta-2-microglobulin (protein)
Unique Ligands	GOL

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3C41 \| pdb_00003c41	Download File View File

ABC protein ArtP in complex with AMP-PNP/Mg2+

Thaben, P.F., Eckey, V., Scheffel, F., Saenger, W., Schneider, E., Vahedi-Faridi, A.

To be published

Released	2009-02-03
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Amino acid ABC transporter (ArtP) (protein)
Unique Ligands	ANP, MG

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3C4J \| pdb_00003c4j	Download File View File

ABC protein ArtP in complex with ATP-gamma-S

Thaben, P.F., Eckey, V., Scheffel, F., Saenger, W., Schneider, E., Vahedi-Faridi, A.

To be published

Released	2009-02-03
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Amino acid ABC transporter (ArtP) (protein)
Unique Ligands	AGS, MG

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3D7E \| pdb_00003d7e	Download File View File

Enterococcus casseliflavus glycerol kinase mutant HIS232ALA complexed with glycerol

Yeh, J.I., Vahedi-Faridi, A.

(2009) Biochemistry 48: 346-356

Released	2009-04-28
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Enterococcus casseliflavus
Macromolecule	Glycerol kinase (protein)
Unique Ligands	GOL

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3H1Z \| pdb_00003h1z	Download File View File

Molecular basis for the association of PIPKIgamma -p90 with the clathrin adaptor AP-2

Vahedi-Faridi, A., Kahlfeldt, N., Schaefer, J.G., Krainer, G., Keller, S., Saenger, W., Krauss, M., Haucke, V.

(2010) J Biological Chem 285: 2734-2749

Released	2009-11-24
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	AP-2 complex subunit beta-1 (protein) Phosphatidylinositol-4-phosphate 5-kinase type-1 gamma (protein)

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3H85 \| pdb_00003h85	Download File View File

Molecular basis for the association of PIPKI gamma-p90 with the clathrin adaptor AP-2

Vahedi-Faridi, A., Kahlfeldt, N., Schaefer, J.G., Haucke, V.

(2010) J Biological Chem 285: 2734-2749

Released	2009-11-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	AP-2 complex subunit mu-1 (protein) Phosphatidylinositol-4-phosphate 5-kinase type-1 gamma (protein)
Unique Ligands	NI

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3HS8 \| pdb_00003hs8	Download File View File

Intersectin 1-peptide-AP2 alpha ear complex

Vahedi-Faridi, A., Pechstein, A., Schaefer, J.G., Saenger, W., Haucke, V.

(2010) Proc Natl Acad Sci U S A 107: 4206-4211

Released	2010-02-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	Adaptor protein complex AP-2, alpha 2 subunit (protein) peptide from Intersectin-1, residues 840-851 (protein)

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3HS9 \| pdb_00003hs9	Download File View File

Intersectin 1-peptide-AP2 beta ear complex

Vahedi-Faridi, A., Pechstein, A., Schaefer, J.G., Saenger, W., Haucke, V.

(2010) Proc Natl Acad Sci U S A 107: 4206-4211

Released	2010-02-23
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Rattus norvegicus
Macromolecule	AP-2 complex subunit beta-1 (protein) peptide from Intersectin-1, residues 841-851 (protein)

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3JYR \| pdb_00003jyr	Download File View File

Crystal structures of the GacH receptor of Streptomyces glaucescens GLA.O in the unliganded form and in complex with acarbose and an acarbose homolog. Comparison with acarbose-loaded maltose binding protein of Salmonella typhimurium.

Vahedi-Faridi, A., Licht, A., Bulut, H., Schneider, E.

(2010) J Mol Biology 397: 709-723

Released	2010-02-16
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Maltose-binding periplasmic protein (protein)
Unique branched monosaccharides	AC1, GLC

1 to 25 of 39 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ROV | pdb_00001rov

2NYB | pdb_00002nyb

2OLJ | pdb_00002olj

2OLK | pdb_00002olk

2OUK | pdb_00002ouk

2PR9 | pdb_00002pr9

2PVU | pdb_00002pvu

2Q0H | pdb_00002q0h

2Q2A | pdb_00002q2a

2Q2C | pdb_00002q2c

2X3V | pdb_00002x3v

2X3X | pdb_00002x3x

3BO8 | pdb_00003bo8

3BP4 | pdb_00003bp4

3BP7 | pdb_00003bp7

3BVN | pdb_00003bvn

3BXN | pdb_00003bxn

3C41 | pdb_00003c41

3C4J | pdb_00003c4j

3D7E | pdb_00003d7e

3H1Z | pdb_00003h1z

3H85 | pdb_00003h85

3HS8 | pdb_00003hs8

3HS9 | pdb_00003hs9

3JYR | pdb_00003jyr