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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Bou-Nader, C."

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Search Summary

This query matches 27 Structures.

Refinements

Structure Determination Methodology

experimental (27)

Scientific Name of Source Organism

	Homo sapiens (12)
	Human immunodeficiency virus 1 (5)
	Thermochaetoides thermophila (3)
	synthetic construct (3)
	Mus musculus (2)
	Thermotoga maritima (2)
	Bacillus subtilis (1)
	Escherichia coli (1)
	Human adenovirus 2 (1)
	Shigella flexneri (1)

Taxonomy

	Eukaryota (17)
	Bacteria (5)
	Riboviria (5)
	other sequences (3)
	Varidnaviria (1)

Experimental Method

X-RAY DIFFRACTION (27)

Polymer Entity Type

	Protein (21)
	RNA (10)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (11)
	2.5 - 3.0 (10)
	3.0 - 3.5 (3)

Release Date

	2015 - 2019 (13)
	2020 - 2024 (10)
	2025 - 2029 (4)

Enzyme Classification Name

	Oxidoreductases (10)
	Transferases (5)
	Hydrolases (1)

Symmetry Type

	Asymmetric (15)
	Cyclic (4)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a+b) (1)
	Artifacts (1)

AllSelected

1 to 25 of 27 Structures

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4WFS \| pdb_00004wfs	Download File View File

Crystal Structure of tRNA-dihydrouridine(20) synthase catalytic domain

Bou-Nader, C., Pecqueur, L., Kamah, A., Bregeon, D., Golinelli-Pimpaneau, B., Guimaraes, B.G., Fontecave, M., Hamdane, D.

(2015) Nucleic Acids Res 43: 9446-9456

Released	2015-10-07
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Homo sapiens
Macromolecule	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like (protein)
Unique Ligands	CL, FMN, SO4

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4WFT \| pdb_00004wft	Download File View File

Crystal structure of tRNA-dihydrouridine(20) synthase dsRBD domain

Bou-Nader, C., Pecqueur, L., Kamah, A., Bregeon, D., Golinelli-Pimpaneau, B., Guimaraes, B.G., Fontecave, M., Hamdane, D.

(2015) Nucleic Acids Res 43: 9446-9456

Released	2015-10-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like (protein)

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5NL1 \| pdb_00005nl1	Download File View File

Shigella IpaA-VBS3/TBS in complex with the Talin VBS1 domain 488-512

Bou-Nader, C., Pecqueur, L., Valencia-Gallardo, C., Fontecave, M., Tran Van Nhieu, G.

(2019) Cell Rep 26: 921-932.e6

Released	2018-05-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus Shigella flexneri
Macromolecule	Invasin IpaA (protein) Talin-1 (protein)
Unique Ligands	CL, EDO, SO4

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5OC4 \| pdb_00005oc4	Download File View File

Crystal structure of human tRNA-dihydrouridine(20) synthase dsRBD R361A-R362A mutant

Bou-nader, C., Pecqueur, L., Hamdane, D.

(2019) Nucleic Acids Res 47: 3117-3126

Released	2018-12-26
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Homo sapiens
Macromolecule	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like (protein)
Unique Ligands	CAC, CL, GOL

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5OC5 \| pdb_00005oc5	Download File View File

Crystal structure of human tRNA-dihydrouridine(20) synthase dsRBD K419A-K420A mutant

Bou-nader, C., Pecqueur, L., Hamdane, D.

(2019) Nucleic Acids Res 47: 3117-3126

Released	2018-12-26
Method	X-RAY DIFFRACTION 1.893 Å
Organisms	Homo sapiens
Macromolecule	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like (protein)
Unique Ligands	CL, GOL

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5OC6 \| pdb_00005oc6	Download File View File

Crystal structure of human tRNA-dihydrouridine(20) synthase dsRBD in complex with a 22 nucleotide dsRNA

Bou-nader, C., Pecqueur, L., Hamdane, D.

(2019) Nucleic Acids Res 47: 3117-3126

Released	2018-12-26
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like (protein) RNA (nucleic acid)

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6EI8 \| pdb_00006ei8	Download File View File

Crystal structure of human tRNA-dihydrouridine (20) synthase dsRBD F359A mutant

Bou-Nader, C., Pecqueur, L., Hamdane, D.

(2019) Biochemistry 58: 2463-2473

Released	2018-10-10
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like (protein)
Unique Ligands	SO4

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6EI9 \| pdb_00006ei9	Download File View File

Crystal structure of E. coli tRNA-dihydrouridine synthase B (DusB)

Bou-Nader, C., Hamdane, D.

(2018) Nucleic Acids Res 46: 1386-1394

Released	2018-01-17
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Escherichia coli
Macromolecule	tRNA-dihydrouridine synthase B (protein)
Unique Ligands	EPE, FMN, GOL, SO4

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6EZA \| pdb_00006eza	Download File View File

Crystal Structure of human tRNA-dihydrouridine(20) synthase catalytic domain E294K mutant

Bou-Nader, C., Bregeon, D., Pecqueur, L., Vincent, G., Fontecave, M., Hamdane, D.

(2018) Biochemistry 57: 5407-5414

Released	2018-09-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like (protein)
Unique Ligands	CL, FMN, GOL, SO4

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6EZB \| pdb_00006ezb	Download File View File

Crystal Structure of human tRNA-dihydrouridine(20) synthase catalytic domain Q305K mutant

Bou-Nader, C., Bregeon, D., Pecqueur, L., Fontecave, M., Hamdane, D.

(2018) Biochemistry 57: 5407-5414

Released	2018-09-26
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like (protein)
Unique Ligands	FMN, GOL, SO4

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6EZC \| pdb_00006ezc	Download File View File

Crystal Structure of human tRNA-dihydrouridine(20) synthase catalytic domain E294K Q305K double mutant

Bou-Nader, C., Bregeon, D., Vincent, G., Fontecave, M., Hamdane, D.

(2018) Biochemistry 57: 5407-5414

Released	2018-09-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like (protein)
Unique Ligands	CL, FMN, GOL, PGE, SO4

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6F7T \| pdb_00006f7t	Download File View File

Crystal Structure of an Fab fragment in complex with a peptide from Bacillus subtilis RNase Y

Golinelli-Pimpaneau, B., Hardouin, P.

(2018) Biophys J 115: 2102-2113

Released	2018-10-31
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bacillus subtilis Mus musculus
Macromolecule	FAB RY79-90, HEAVY CHAIN (protein) FAB RY79-90, LIGHT CHAIN (protein) Ribonuclease Y (protein)
Unique Ligands	MG

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6OL3 \| pdb_00006ol3	Download File View File

Crystal structure of an adenovirus virus-associated RNA

Hood, I.V., Gordon, J.M., Bou-Nader, C., Henderson, F.V., Bahmanjah, S., Zhang, J.

(2019) Nat Commun 10: 2871-2871

Released	2019-07-03
Method	X-RAY DIFFRACTION 2.74 Å
Organisms	Human adenovirus 2
Macromolecule	Adenovirus Virus-Associated (VA) RNA I apical and central domains (nucleic acid)
Unique Ligands	K

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7MRL \| pdb_00007mrl	Download File View File

Structure of HIV-1 matrix domain bound to human tRNALys3

Bou-Nader, C., Zhang, J.

(2021) Cell Host Microbe 29: 1421

Released	2021-08-11
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HIV-1 matrix domain (protein) tRNA Lys3 (nucleic acid)
Unique Ligands	MG

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7NDW \| pdb_00007ndw	Download File View File

ThyX-FADH2 soaked with 20 mM Formaldehyde

Bou-Nader, C., Pecqueur, L., Hamdane, D.

(2021) Nat Commun 12: 4542-4542

Released	2021-07-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermotoga maritima
Macromolecule	Flavin-dependent thymidylate synthase (protein)
Unique Ligands	FDA, HUF, PEG, PG4, PO4

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7NDZ \| pdb_00007ndz	Download File View File

ThyX reconstituted with N5-carbinolamine flavin

Bou-Nader, C., Pecqueur, L., Hamdane, D.

(2021) Nat Commun 12: 4542-4542

Released	2021-07-21
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermotoga maritima
Macromolecule	Flavin-dependent thymidylate synthase (protein)
Unique Ligands	FDA, HUF, PEG, PGE

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7TQA \| pdb_00007tqa	Download File View File

Crystal Structure of monoclonal S9.6 Fab

Bou-Nader, C., Zhang, J.

(2022) Nat Commun 13: 1641-1641

Released	2022-03-30
Method	X-RAY DIFFRACTION 2.328 Å
Organisms	synthetic construct
Macromolecule	Fab S9.6 heavy chain (protein) Fab S9.6 light chain (protein)
Unique Ligands	GOL, SO4

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7TQB \| pdb_00007tqb	Download File View File

Crystal structure of monoclonal S9.6 Fab bound to DNA-RNA hybrid

Bou-Nader, C., Zhang, J.

(2022) Nat Commun 13: 1641-1641

Released	2022-03-30
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	synthetic construct
Macromolecule	FAB S9.6 Heavy Chain (protein) FAB S9.6 Light Chain (protein) DNA (nucleic acid) RNA (nucleic acid)
Unique Ligands	GOL

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8V1H \| pdb_00008v1h	Download File View File

Crystal structure of human pre-mascRNA

Skeparnias, I., Zhang, J.

(2024) Nat Struct Mol Biol 31: 1655-1668

Released	2024-07-10
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Homo sapiens
Macromolecule	pre-mascRNA (nucleic acid)
Unique Ligands	NA

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8V1I \| pdb_00008v1i	Download File View File

Crystal structure of human mascRNA

Skeparnias, I., Zhang, J.

(2024) Nat Struct Mol Biol 31: 1655-1668

Released	2024-07-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	mascRNA (nucleic acid)
Unique Ligands	ACT, CA, EDO

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9C9Q \| pdb_00009c9q	Download File View File

Crystal structure of Chaetomium thermophilum Gcn2 HisRS-like domain

Bou-Nader, C., Bahmanjah, S., Zhang, J.

(2024) Proc Natl Acad Sci U S A 121: e2409628121-e2409628121

Released	2024-08-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermochaetoides thermophila
Macromolecule	non-specific serine/threonine protein kinase (protein)

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9C9R \| pdb_00009c9r	Download File View File

Crystal structure of Chaetomium thermophilum Gcn2 HisRS-like domain, F1090C/G1326S variant

Bou-Nader, C., Bahmanjah, S., Zhang, J.

(2024) Proc Natl Acad Sci U S A 121: e2409628121-e2409628121

Released	2024-08-21
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Thermochaetoides thermophila
Macromolecule	non-specific serine/threonine protein kinase (protein)

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9CBS \| pdb_00009cbs	Download File View File

Crystal structure of Chaetomium thermophilum Gcn2 HisRS-like domain, catalytic domain

Zhang, J.

(2024) Proc Natl Acad Sci U S A 121: e2409628121-e2409628121

Released	2024-08-21
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Thermochaetoides thermophila
Macromolecule	non-specific serine/threonine protein kinase (protein)

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9DE5 \| pdb_00009de5	Download File View File

Structure of full-length HIV TAR RNA bound to HIV Tat RNA-binding domain

Bou-Nader, C., Zhang, J.

(2025) Nat Commun 16: 2252-2252

Released	2025-03-12
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protein Tat (protein) RNA (55-MER) (nucleic acid)
Unique Ligands	K