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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Cherney, M.M."

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Search Summary

This query matches 130 Structures.

Refinements

Structure Determination Methodology

experimental (130)

Scientific Name of Source Organism

	Mycobacterium tuberculosis H37Rv (19)
	Acidithiobacillus ferrooxidans ATCC 23270 (15)
	Homo sapiens (14)
	Mycobacterium tuberculosis (13)
	Arabidopsis thaliana (11)
	Severe acute respiratory syndrome-related coronavirus (9)
	Hepacivirus hominis (7)
	Plasmodium falciparum (5)
	Hepatovirus A (4)
	Scytalidium lignicola (4)

More...

Taxonomy

	Bacteria (56)
	Eukaryota (42)
	Riboviria (30)
	Archaea (5)
	Duplodnaviria (1)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (130)

Polymer Entity Type

	Protein (130)
	DNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (49)
	2.0 - 2.5 (53)
	2.5 - 3.0 (18)
	3.0 - 3.5 (3)

Release Date

	1995 - 1999 (5)
	2000 - 2004 (24)
	2005 - 2009 (71)
	2010 - 2014 (25)
	2015 - 2019 (4)
	2020 - 2024 (1)

Enzyme Classification Name

	Hydrolases (52)
	Transferases (27)
	Oxidoreductases (23)
	Isomerases (4)
	Lyases (1)

Membrane Protein Annotation

	OPM (3)
	MemProtMD (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (73)
	Cyclic (71)
	Dihedral (9)
	Helical (2)

SCOP Classification

	Alpha and beta proteins (a+b) (28)
	Alpha and beta proteins (a/b) (28)
	All beta proteins (37)
	Artifacts (14)
	Multi-domain proteins (alpha and beta) (12)
	Small proteins (3)
	All alpha proteins (1)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 130 Structures

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1AVF \| pdb_00001avf	Download File View File

ACTIVATION INTERMEDIATE 2 OF HUMAN GASTRICSIN FROM HUMAN STOMACH

Khan, A.R., Cherney, M.M., Tarasova, N.I., James, M.N.G.

(1997) Nat Struct Biol 4: 1010-1015

Released	1998-02-25
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Homo sapiens
Macromolecule	GASTRICSIN (protein)
Unique Ligands	NA

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1F32 \| pdb_00001f32	Download File View File

CRYSTAL STRUCTURE OF ASCARIS PEPSIN INHIBITOR-3

Ng, K.K., Petersen, J.F., Cherney, M.M., Garen, C., James, M.N.

(2000) Nat Struct Biol 7: 653-657

Released	2001-02-01
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Ascaris suum
Macromolecule	MAJOR PEPSIN INHIBITOR PI-3 (protein)

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1F34 \| pdb_00001f34	Download File View File

CRYSTAL STRUCTURE OF ASCARIS PEPSIN INHIBITOR-3 BOUND TO PORCINE PEPSIN

Ng, K.K., Petersen, J.F., Cherney, M.M., Garen, C., James, M.N.

(2000) Nat Struct Biol 7: 653-657

Released	2001-02-01
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Ascaris suum Sus scrofa
Macromolecule	MAJOR PEPSIN INHIBITOR PI-3 (protein) PEPSIN A (protein)
Unique Ligands	MPD

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1JK7 \| pdb_00001jk7	Download File View File

CRYSTAL STRUCTURE OF THE TUMOR-PROMOTER OKADAIC ACID BOUND TO PROTEIN PHOSPHATASE-1

Maynes, J.T., Bateman, K.S., Cherney, M.M., Das, A.K., James, M.N.

(2001) J Biological Chem 276: 44078-44082

Released	2001-08-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE PROTEIN PHOSPHATASE PP1-GAMMA CATALYTIC SUBUNIT (protein)
Unique Ligands	BME, MN, OKA, SO4

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1KHV \| pdb_00001khv	Download File View File

Crystal Structure of Rabbit Hemorrhagic Disease Virus RNA-dependent RNA polymerase complexed with Lu3+

Ng, K.K., Cherney, M.M., Vazquez, A.L., Machin, A., Alonso, J.M., Parra, F., James, M.N.

(2002) J Biological Chem 277: 1381-1387

Released	2002-01-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rabbit hemorrhagic disease virus
Macromolecule	RNA-DIRECTED RNA POLYMERASE (protein)
Unique Ligands	LU

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1KHW \| pdb_00001khw	Download File View File

Crystal Structure of Rabbit Hemorrhagic Disease Virus RNA-dependent RNA polymerase complexed with Mn2+

Ng, K.K., Cherney, M.M., Vazquez, A.L., Machin, A., Alonso, J.M., Parra, F., James, M.N.

(2002) J Biological Chem 277: 1381-1387

Released	2002-01-16
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Rabbit hemorrhagic disease virus
Macromolecule	RNA-DIRECTED RNA POLYMERASE (protein)
Unique Ligands	MN

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1L1N \| pdb_00001l1n	Download File View File

POLIOVIRUS 3C PROTEINASE

Mosimann, S.C., Chernaia, M.M., Sia, S., Plotch, S., James, M.N.G.

(1997) J Mol Biology 273: 1032-1047

Released	2002-04-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Human poliovirus 1 Mahoney
Macromolecule	Genome polyprotein: Picornain 3C (protein)

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1MBM \| pdb_00001mbm	Download File View File

NSP4 proteinase from Equine Arteritis Virus

Barrette-Ng, I.H., Ng, K.K.-S., Mark, B.L., van Aken, D., Cherney, M.M., Garen, C., Kolodenko, Y., Gorbalenya, A.E., Snijder, E.J., James, M.N.G.

(2002) J Biological Chem 277: 39960-39966

Released	2002-10-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Equine arteritis virus
Macromolecule	chymotrypsin-like serine protease (protein)

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1MIQ \| pdb_00001miq	Download File View File

Crystal structure of proplasmepsin from the human malarial pathogen Plasmodium vivax

Bernstein, N.K., Cherney, M.M., Yowell, C.A., Dame, J.B., James, M.N.

(2003) J Mol Biology 329: 505-524

Released	2002-09-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Plasmodium vivax
Macromolecule	plasmepsin (protein)

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1NHU \| pdb_00001nhu	Download File View File

Hepatitis C virus RNA polymerase in complex with non-nucleoside analogue inhibitor

Wang, M., Ng, K.K.S., Cherney, M.M., Chan, L., Yannopoulos, C.G., Bedard, J., Morin, N., Nguyen-Ba, N., Alaoui-Ismaili, M.H., Bethell, R.C., James, M.N.G.

(2003) J Biological Chem 278: 9489-9495

Released	2003-03-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Hepatitis C virus subtype 1b
Macromolecule	HEPATITIS C VIRUS NS5B RNA-DEPENDENT RNA POLYMERASE (protein)
Unique Ligands	153

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1NHV \| pdb_00001nhv	Download File View File

Hepatitis C virus RNA polymerase in complex with non-nucleoside analogue inhibitor

Wang, M., Ng, K.K.S., Cherney, M.M., Chan, L., Yannopoulos, C.G., Bedard, J., Morin, N., Nguyen-Ba, N., Alaoui-Ismaili, M.H., Bethell, R.C., James, M.N.G.

(2003) J Biological Chem 278: 9489-9495

Released	2003-03-18
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Hepatitis C virus subtype 1b
Macromolecule	HEPATITIS C VIRUS NS5B RNA-DEPENDENT RNA POLYMERASE (protein)
Unique Ligands	154

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1NOU \| pdb_00001nou	Download File View File

Native human lysosomal beta-hexosaminidase isoform B

Mark, B.L., Mahuran, D.J., Cherney, M.M., Zhao, D., Knapp, S., James, M.N.G.

(2003) J Mol Biology 327: 1093-1109

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	beta-hexosaminidase beta chain (protein)
Unique Ligands	GOL, SO4
Unique branched monosaccharides	NAG

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1NOW \| pdb_00001now	Download File View File

Human lysosomal beta-hexosaminidase isoform B in complex with (2R,3R,4S,5R)-2-Acetamido-3,4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride (GalNAc-isofagomine)

Mark, B.L., Mahuran, D.J., Cherney, M.M., Zhao, D., Knapp, S., James, M.N.G.

(2003) J Mol Biology 327: 1093-1109

Released	2003-04-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	beta-hexosaminidase beta chain (protein)
Unique Ligands	GOL, IFG, SO4
Unique branched monosaccharides	NAG

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1NP0 \| pdb_00001np0	Download File View File

Human lysosomal beta-hexosaminidase isoform B in complex with intermediate analogue NAG-thiazoline

Mark, B.L., Mahuran, D.J., Cherney, M.M., Zhao, D., Knapp, S., James, M.N.G.

(2003) J Mol Biology 327: 1093-1109

Released	2003-04-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Beta-hexosaminidase subunit beta (protein) Beta-hexosaminidase subunit beta chain A (protein) Beta-hexosaminidase subunit beta chain B (protein)
Unique Ligands	GOL, NGT, SO4
Unique branched monosaccharides	NAG

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1OYV \| pdb_00001oyv	Download File View File

Crystal structure of tomato inhibitor-II in a ternary complex with subtilisin Carlsberg

Barrette-Ng, I.H., Ng, K.K., Cherney, M.M., Pearce, G., Ryan, C.A., James, M.N.

(2003) J Biological Chem 278: 24062-24071

Released	2003-07-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus licheniformis Solanum lycopersicum
Macromolecule	Subtilisin Carlsberg (protein) Wound-induced proteinase inhibitor-II (protein)
Unique Ligands	CA

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1PFZ \| pdb_00001pfz	Download File View File

PROPLASMEPSIN II FROM PLASMODIUM FALCIPARUM

Bernstein, N.K., Cherney, M.M., Loetscher, H., Ridley, R.G., James, M.N.G.

(1999) Nat Struct Biol 6: 32-37

Released	1999-01-13
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Plasmodium falciparum
Macromolecule	PROPLASMEPSIN II (protein)
Unique Ligands	GOL

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1PJU \| pdb_00001pju	Download File View File

Unbound form of Tomato Inhibitor-II

Barrette-Ng, I.H., Ng, K.K.-S., Cherney, M.M., Pearce, G., Ghani, U., Ryan, C.A., James, M.N.G.

(2003) J Biological Chem 278: 31391-31400

Released	2003-09-16
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Solanum lycopersicum
Macromolecule	Wound-induced proteinase inhibitor II (protein)
Unique Ligands	SO4

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1Q74 \| pdb_00001q74	Download File View File

The Crystal Structure of 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside Deacetylase (MshB)

Maynes, J.T., Garen, C., Cherney, M.M., Newton, G., Arad, D., Av-Gay, Y., Fahey, R.C., James, M.N., TB Structural Genomics Consortium (TBSGC)

(2003) J Biological Chem 278: 47166-47170

Released	2003-12-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside Deacetylase (MshB) (protein)
Unique Ligands	PE4, ZN

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1QA7 \| pdb_00001qa7	Download File View File

CRYSTAL COMPLEX OF THE 3C PROTEINASE FROM HEPATITIS A VIRUS WITH ITS INHIBITOR AND IMPLICATIONS FOR THE POLYPROTEIN PROCESSING IN HAV

Bergmann, E.M., Cherney, M.M., Mckendrick, J., Vederas, J.C., James, M.N.G.

(1999) Virology 265: 153-163

Released	1999-04-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Hepatovirus A
Macromolecule	HAV 3C PROTEINASE (protein)
Unique Ligands	DMS, GOL, IVF

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1QRP \| pdb_00001qrp	Download File View File

Human pepsin 3A in complex with a phosphonate inhibitor IVA-VAL-VAL-LEU(P)-(O)PHE-ALA-ALA-OME

Fujinaga, M., Cherney, M.M., Tarasova, N.I., Bartlett, P.A., Hanson, J.E., James, M.N.G.

(2000) Acta Crystallogr D Biol Crystallogr 56: 272-279

Released	1999-06-18
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Homo sapiens
Macromolecule	PEPSIN 3A (protein)
Unique Ligands	HH0

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1QS8 \| pdb_00001qs8	Download File View File

Crystal structure of the P. vivax aspartic proteinase plasmepsin complexed with the inhibitor pepstatin A

Khazanovich Bernstein, N., Cherney, M.M., Yowell, C.A., Dame, J.B., James, M.N.G.

(2003) J Mol Biology 329: 505-524

Released	1999-07-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Plasmodium vivax Streptomyces argenteolus subsp. toyonakensis
Macromolecule	PEPSTATIN A (protein) PLASMEPSIN (protein)
Unique Ligands	ACT

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1R4P \| pdb_00001r4p	Download File View File

Shiga toxin type 2

Fraser, M.E., Fujinaga, M., Cherney, M.M., Melton-Celsa, A.R., Twiddy, E.M., O'Brien, A.D., James, M.N.G.

(2004) J Biological Chem 279: 27511-27517

Released	2004-05-11
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Escherichia coli
Macromolecule	shiga-like toxin type II A subunit (protein) shiga-like toxin type II B subunit (protein)
Unique Ligands	1PS, EDO, FMT, NA

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1R4Q \| pdb_00001r4q	Download File View File

Shiga toxin

Fraser, M.E., Fujinaga, M., Cherney, M.M., Melton-Celsa, A.R., Twiddy, E.M., O'Brien, A.D., James, M.N.G.

(2004) J Biological Chem 279: 27511-27517

Released	2004-05-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Shigella dysenteriae
Macromolecule	SHT cytotoxin A subunit (protein) Shigella toxin chain B (protein)

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1S2B \| pdb_00001s2b	Download File View File

Structure of SCP-B the first member of the Eqolisin family of Peptidases to have its structure determined

Fujinaga, M., Cherney, M.M., Oyama, H., Oda, K., James, M.N.

(2004) Proc Natl Acad Sci U S A 101: 3364-3369

Released	2004-04-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Scytalidium lignicola
Macromolecule	Scytalidopepsin B (protein)

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1S2K \| pdb_00001s2k	Download File View File

Structure of SCP-B a member of the Eqolisin family of Peptidases in a complex with a Tripeptide Ala-Ile-His

Fujinaga, M., Cherney, M.M., Oyama, H., Oda, K., James, M.N.

(2004) Proc Natl Acad Sci U S A 101: 3364-3369

Released	2004-04-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Scytalidium lignicola
Macromolecule	Ala-Ile-His tripeptide (protein) Scytalidopepsin B (protein)
Unique Ligands	TYR

1 to 25 of 130 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AVF | pdb_00001avf

1F32 | pdb_00001f32

1F34 | pdb_00001f34

1JK7 | pdb_00001jk7

1KHV | pdb_00001khv

1KHW | pdb_00001khw

1L1N | pdb_00001l1n

1MBM | pdb_00001mbm

1MIQ | pdb_00001miq

1NHU | pdb_00001nhu

1NHV | pdb_00001nhv

1NOU | pdb_00001nou

1NOW | pdb_00001now

1NP0 | pdb_00001np0

1OYV | pdb_00001oyv

1PFZ | pdb_00001pfz

1PJU | pdb_00001pju

1Q74 | pdb_00001q74

1QA7 | pdb_00001qa7

1QRP | pdb_00001qrp

1QS8 | pdb_00001qs8

1R4P | pdb_00001r4p

1R4Q | pdb_00001r4q

1S2B | pdb_00001s2b

1S2K | pdb_00001s2k