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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Cho, Y."

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Search Summary

This query matches 181 Structures.

Refinements

Structure Determination Methodology

experimental (181)

Scientific Name of Source Organism

	Homo sapiens (60)
	Escherichia coli (23)
	synthetic construct (19)
	Gallus gallus (9)
	Methanocaldococcus jannaschii (8)
	Mus musculus (8)
	Pseudomonas aeruginosa PAO1 (7)
	Archaeoglobus fulgidus (5)
	Bacillus subtilis subsp. subtilis str. 168 (5)
	Escherichia coli K-12 (5)

More...

Taxonomy

	Eukaryota (98)
	Bacteria (57)
	Archaea (24)
	other sequences (19)
	Duplodnaviria (3)
	Eukaryota (eukaryotes) (1)
	Monodnaviria (1)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (156)
	ELECTRON MICROSCOPY (23)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (181)
	DNA (19)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (40)
	2.0 - 2.5 (49)
	2.5 - 3.0 (45)
	3.0 - 3.5 (20)
	3.5 - 4.0 (7)
	4.0 - 4.5 (7)
	> 4.5 (7)

Release Date

	1990 - 1994 (8)
	1995 - 1999 (24)
	2000 - 2004 (19)
	2005 - 2009 (27)
	2010 - 2014 (25)
	2015 - 2019 (23)
	2020 - 2024 (50)
	2025 - 2029 (5)

Enzyme Classification Name

	Hydrolases (49)
	Transferases (28)
	Ligases (18)
	Isomerases (16)
	Lyases (9)
	Oxidoreductases (9)

Membrane Protein Annotation

	PDBTM (15)
	mpstruc (8)
	OPM (6)
	MemProtMD (7)

Symmetry Type

	Asymmetric (96)
	Cyclic (60)
	Dihedral (28)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (57)
	Alpha and beta proteins (a+b) (33)
	All alpha proteins (11)
	All beta proteins (12)
	Small proteins (10)
	Artifacts (11)
	Coiled coil proteins (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 181 Structures

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1A76 \| pdb_00001a76	Download File View File

FLAP ENDONUCLEASE-1 FROM METHANOCOCCUS JANNASCHII

Hwang, K.Y., Baek, K., Kim, H., Cho, Y.

(1998) Nat Struct Biol 5: 707-713

Released	1999-08-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	FLAP ENDONUCLEASE-1 PROTEIN (protein)
Unique Ligands	MN

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1A77 \| pdb_00001a77	Download File View File

FLAP ENDONUCLEASE-1 FROM METHANOCOCCUS JANNASCHII

Hwang, K.Y., Baek, K., Kim, H., Cho, Y.

(1998) Nat Struct Biol 5: 707-713

Released	1999-08-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	FLAP ENDONUCLEASE-1 PROTEIN (protein)
Unique Ligands	MG

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1AD6 \| pdb_00001ad6	Download File View File

DOMAIN A OF HUMAN RETINOBLASTOMA TUMOR SUPPRESSOR

Kim, H.Y., Cho, Y.

(1997) Nat Struct Biol 4: 390-395

Released	1998-08-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	RETINOBLASTOMA TUMOR SUPPRESSOR (protein)

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1ADE \| pdb_00001ade	Download File View File

STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE PH 7 AT 25 DEGREES CELSIUS

Silva, M.M., Poland, B.W., Hoffman, C.M., Fromm, H.J., Honzatko, R.B.

(1995) J Mol Biology 254: 431-446

Released	1996-01-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	ADENYLOSUCCINATE SYNTHETASE (protein)

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1ADI \| pdb_00001adi	Download File View File

STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE AT PH 6.5 AND 25 DEGREES CELSIUS

Silva, M.M., Poland, B.W., Hoffman, C.M., Fromm, H.J., Honzatko, R.B.

(1995) J Mol Biology 254: 431-446

Released	1996-06-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	ADENYLOSUCCINATE SYNTHETASE (protein)

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1AT1 \| pdb_00001at1	Download File View File

CRYSTAL STRUCTURES OF PHOSPHONOACETAMIDE LIGATED T AND PHOSPHONOACETAMIDE AND MALONATE LIGATED R STATES OF ASPARTATE CARBAMOYLTRANSFERASE AT 2.8-ANGSTROMS RESOLUTION AND NEUTRAL P*H

Gouaux, J.E., Lipscomb, W.N.

(1990) Biochemistry 29: 389-402

Released	1990-10-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN (protein) ASPARTATE CARBAMOYLTRANSFERASE, CATALYTIC CHAIN (protein)
Unique Ligands	MLI, PCT, ZN

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1B73 \| pdb_00001b73	Download File View File

GLUTAMATE RACEMASE FROM AQUIFEX PYROPHILUS

Hwang, K.Y., Cho, C.S., Kim, S.S., Yu, Y.G., Cho, Y.

(1999) Nat Struct Biol 6: 422-426

Released	1999-01-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aquifex pyrophilus
Macromolecule	GLUTAMATE RACEMASE (protein)

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1B74 \| pdb_00001b74	Download File View File

GLUTAMATE RACEMASE FROM AQUIFEX PYROPHILUS

Hwang, K.Y., Cho, C.S., Kim, S.S., Yu, Y.G., Cho, Y.

(1999) Nat Struct Biol 6: 422-426

Released	2000-01-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aquifex pyrophilus
Macromolecule	GLUTAMATE RACEMASE (protein)
Unique Ligands	DGN

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1B78 \| pdb_00001b78	Download File View File

STRUCTURE-BASED IDENTIFICATION OF THE BIOCHEMICAL FUNCTION OF A HYPOTHETICAL PROTEIN FROM METHANOCOCCUS JANNASCHII:MJ0226

Hwang, K.Y., Chung, J.H., Han, Y.S., Kim, S.H., Cho, Y.

(1999) Nat Struct Biol 6: 691-696

Released	2000-01-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	PYROPHOSPHATASE (protein)

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1B8P \| pdb_00001b8p	Download File View File

MALATE DEHYDROGENASE FROM AQUASPIRILLUM ARCTICUM

Kim, S.Y., Hwang, K.Y., Kim, S.-H., Han, Y.S., Cho, Y.

(1999) J Biological Chem 274: 11761-11767

Released	1999-07-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aquaspirillum arcticum
Macromolecule	PROTEIN (MALATE DEHYDROGENASE) (protein)

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1B8U \| pdb_00001b8u	Download File View File

MALATE DEHYDROGENASE FROM AQUASPIRILLUM ARCTICUM

Kim, S.Y., Hwang, K.Y., Kim, S.-H., Han, Y.S., Cho, Y.

(1999) J Biological Chem 274: 11761-11767

Released	1999-07-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Aquaspirillum arcticum
Macromolecule	PROTEIN (MALATE DEHYDROGENASE) (protein)
Unique Ligands	NAD, OAA

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1B8V \| pdb_00001b8v	Download File View File

Malate dehydrogenase from Aquaspirillum arcticum

Kim, S.Y., Hwang, K.Y., Kim, S.H., Han, Y.S., Cho, Y.

(1999) J Biological Chem 274: 11761-11767

Released	1999-07-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Aquaspirillum arcticum
Macromolecule	PROTEIN (MALATE DEHYDROGENASE) (protein)
Unique Ligands	NAD

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1COJ \| pdb_00001coj	Download File View File

FE-SOD FROM AQUIFEX PYROPHILUS, A HYPERTHERMOPHILIC BACTERIUM

Lim, J.H., Yu, Y.G., Kim, S.-H., Cho, S.-J., Ahn, B.Y., Han, Y.S., Cho, Y.

(1997) J Mol Biology 270: 259-274

Released	1999-06-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aquifex pyrophilus
Macromolecule	PROTEIN (SUPEROXIDE DISMUTASE) (protein)
Unique Ligands	FE

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1D09 \| pdb_00001d09	Download File View File

ASPARTATE TRANSCARBAMOYLASE COMPLEXED WITH N-PHOSPHONACETYL-L-ASPARTATE (PALA)

Jin, L., Stec, B., Lipscomb, W.N., Kantrowitz, E.R.

(1999) Proteins 37: 729-742

Released	2000-01-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	ASPARTATE CARBAMOYLTRANSFERASE CATALYTIC CHAIN (protein) ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN (protein)
Unique Ligands	PAL, ZN

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1EFE \| pdb_00001efe	Download File View File

AN ACTIVE MINI-PROINSULIN, M2PI

Cho, Y., Chang, S.G., Choi, K.D., Shin, H., Ahn, B., Kim, K.S.

(2000) J Biochem Mol Biol 33: 120-125

Released	2000-03-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	MINI-PROINSULIN (protein)

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1GH6 \| pdb_00001gh6	Download File View File

RETINOBLASTOMA POCKET COMPLEXED WITH SV40 LARGE T ANTIGEN

Kim, H.Y., Cho, Y.

(2001) EMBO J 20: 295-304

Released	2001-11-15
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Betapolyomavirus macacae Homo sapiens
Macromolecule	Large T antigen (protein) Retinoblastoma-associated protein (protein)

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1GIM \| pdb_00001gim	Download File View File

CRYSTAL STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE FROM ESCHERICHIA COLI COMPLEXED WITH GDP, IMP, HADACIDIN, NO3-, AND MG2+. DATA COLLECTED AT 100K (PH 6.5)

Poland, B.W., Fromm, H.J., Honzatko, R.B.

(1996) J Mol Biology 264: 1013-1027

Released	1996-12-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	ADENYLOSUCCINATE SYNTHETASE (protein)
Unique Ligands	GDP, HDA, IMP, MG, NO3

Explore in 3D

1GIN \| pdb_00001gin	Download File View File

CRYSTAL STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE FROM ESCHERICHIA COLI COMPLEXED WITH GDP, IMP, HADACIDIN, NO3-, AND MG2+. DATA COLLECTED AT 298K (PH 6.5).

Poland, B.W., Fromm, H.J., Honzatko, R.B.

(1996) J Mol Biology 264: 1013-1027

Released	1997-02-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	ADENYLOSUCCINATE SYNTHETASE (protein)
Unique Ligands	GDP, HDA, IMP, MG, NO3

Explore in 3D

1HON \| pdb_00001hon	Download File View File

STRUCTURE OF GUANINE NUCLEOTIDE (GPPCP) COMPLEX OF ADENYLOSUCCINATE SYNTHETASE FROM ESCHERICHIA COLI AT PH 6.5 AND 25 DEGREE CELSIUS

Poland, B.W., Hou, Z., Bruns, C., Fromm, H.J., Honzatko, R.B.

(1996) J Biological Chem 271: 15407-15413

Released	1996-11-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	ADENYLOSUCCINATE SYNTHETASE (protein)
Unique Ligands	GNH

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1HOO \| pdb_00001hoo	Download File View File

STRUCTURE OF GUANINE NUCLEOTIDE (GPPCP) COMPLEX OF ADENYLOSUCCINATE SYNTHETASE FROM E. COLI AT PH 6.5 AND 25 DEGREES CELSIUS

Poland, B.W., Hou, Z., Bruns, C., Fromm, H.J., Honzatko, R.B.

(1996) J Biological Chem 271: 15407-15413

Released	1997-02-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	ADENYLOSUCCINATE SYNTHETASE (protein)
Unique Ligands	GNH, GNP

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1HOP \| pdb_00001hop	Download File View File

STRUCTURE OF GUANINE NUCLEOTIDE (GPPCP) COMPLEX OF ADENYLOSUCCINATE SYNTHETASE FROM ESCHERICHIA COLI AT PH 6.5 AND 25 DEGREES CELSIUS

Poland, B.W., Hou, Z., Bruns, C., Fromm, H.J., Honzatko, R.B.

(1996) J Biological Chem 271: 15407-15413

Released	1996-11-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	ADENYLOSUCCINATE SYNTHETASE (protein)
Unique Ligands	GCP

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1JUY \| pdb_00001juy	Download File View File

REFINED CRYSTAL STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE FROM ESCHERICHIA COLI COMPLEXED WITH HYDANTOCIDIN 5'-PHOSPHATE GDP, HPO4(2-), MG2+, AND HADACIDIN

Poland, B.W., Lee, S.-F., Subramanian, M.V., Siehl, D.L., Anderson, R.J., Fromm, H.J., Honzatko, R.B.

(1996) Biochemistry 35: 15753-15759

Released	1997-06-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	ADENYLOSUCCINATE SYNTHETASE (protein)
Unique Ligands	GDP, H5P, HDA, MG, PI

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1KSZ \| pdb_00001ksz	Download File View File

ENTRAPMENT OF 6-THIOPHOSPHORYL-IMP IN THE ACTIVE SITE OF CRYSTALLINE ADENYLOSUCCINATE SYNTHETASE FROM ESCHERICHIA COLI, DATA COLLECTED AT 298K

Poland, B.W., Bruns, C.A., Fromm, H.J., Honzatko, R.B.

(1997) J Biological Chem 272: 15200-15205

Released	1997-10-08
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	ADENYLOSUCCINATE SYNTHETASE (protein)
Unique Ligands	GDP, HDA, MG, PGS

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1M2G \| pdb_00001m2g	Download File View File

Sir2 homologue-ADP ribose complex

Chang, J., Cho, Y.

(2002) J Biological Chem 277: 34489-34498

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	Silent Information Regulator 2 (protein)
Unique Ligands	APR, ZN

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1M2H \| pdb_00001m2h	Download File View File

Sir2 homologue S24A mutant-ADP ribose complex

Chang, J., Cho, Y.

(2002) J Biological Chem 277: 34489-34498

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	Silent Information Regulator 2 (protein)
Unique Ligands	APR, ZN

1 to 25 of 181 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A76 | pdb_00001a76

1A77 | pdb_00001a77

1AD6 | pdb_00001ad6

1ADE | pdb_00001ade

1ADI | pdb_00001adi

1AT1 | pdb_00001at1

1B73 | pdb_00001b73

1B74 | pdb_00001b74

1B78 | pdb_00001b78

1B8P | pdb_00001b8p

1B8U | pdb_00001b8u

1B8V | pdb_00001b8v

1COJ | pdb_00001coj

1D09 | pdb_00001d09

1EFE | pdb_00001efe

1GH6 | pdb_00001gh6

1GIM | pdb_00001gim

1GIN | pdb_00001gin

1HON | pdb_00001hon

1HOO | pdb_00001hoo

1HOP | pdb_00001hop

1JUY | pdb_00001juy

1KSZ | pdb_00001ksz

1M2G | pdb_00001m2g

1M2H | pdb_00001m2h