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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Jakalian, A."

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Search Summary

This query matches 27 Structures.

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Structure Determination Methodology

experimental (27)

Scientific Name of Source Organism

	Homo sapiens (6)
	Sus scrofa (3)
	Xenopus laevis (2)
	Arabidopsis thaliana (1)
	Bacillus sp. PS3 (1)
	Caenorhabditis elegans (1)
	Escherichia coli (1)
	Escherichia coli BL21(DE3) (1)
	Escherichia coli K-12 (1)
	Fusarium graminearum PH-1 (1)

More...

Taxonomy

	Eukaryota (14)
	Bacteria (7)
	Eukaryota (eukaryotes) (1)
	Riboviria (1)
	other sequences (1)

Experimental Method

	SOLUTION NMR (22)
	X-RAY DIFFRACTION (4)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (23)
	DNA (2)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (1)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (12)
	2005 - 2009 (5)
	2010 - 2014 (3)
	2015 - 2019 (2)
	2020 - 2024 (1)

Enzyme Classification Name

	Transferases (3)
	Isomerases (1)

Membrane Protein Annotation

	OPM (2)
	PDBTM (2)
	MemProtMD (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (19)
	Cyclic (3)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (7)
	All beta proteins (4)
	All alpha proteins (5)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 27 Structures

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1BHU \| pdb_00001bhu	Download File View File

THE 3D STRUCTURE OF THE STREPTOMYCES METALLOPROTEINASE INHIBITOR, SMPI, ISOLATED FROM STREPTOMYCES NIGRESCENS TK-23, NMR, MINIMIZED AVERAGE STRUCTURE

Tate, S., Ohno, A., Seeram, S.S., Hiraga, K., Oda, K., Kainosho, M.

(1998) J Mol Biology 282: 421-433

Released	1999-01-06
Method	SOLUTION NMR
Organisms	Streptomyces nigrescens
Macromolecule	METALLOPROTEINASE INHIBITOR (protein)

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1BXD \| pdb_00001bxd	Download File View File

NMR STRUCTURE OF THE HISTIDINE KINASE DOMAIN OF THE E. COLI OSMOSENSOR ENVZ

Tanaka, T., Saha, S.K., Tomomori, C., Ishima, R., Liu, D., Tong, K.I., Park, H., Dutta, R., Qin, L., Swindells, M.B., Yamazaki, T., Ono, A.M., Kainosho, M., Inouye, M., Ikura, M.

(1998) Nature 396: 88-92

Released	1999-10-02
Method	SOLUTION NMR
Organisms	Escherichia coli BL21(DE3)
Macromolecule	PROTEIN (OSMOLARITY SENSOR PROTEIN (ENVZ)) (protein)
Unique Ligands	ANP

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1C4L \| pdb_00001c4l	Download File View File

SOLUTION STRUCTURE OF AN RNA DUPLEX INCLUDING A C-U BASE-PAIR

Tanaka, Y., Kojima, C., Yamazaki, T., Kodama, T.S., Yasuno, K., Miyashita, S., Ono, A.M., Ono, A.S., Kainosho, M., Kyogoku, Y.

(2000) Biochemistry 39: 7074-7080

Released	2000-08-09
Method	SOLUTION NMR
Macromolecule	RNA (5'-R(CPCPUPGPCPGPUPCPG)-3') (nucleic acid) RNA (5'-R(CPGPAPCPUPCPAPGPG)-3') (nucleic acid)

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1CYU \| pdb_00001cyu	Download File View File

SOLUTION NMR STRUCTURE OF RECOMBINANT HUMAN CYSTATIN A UNDER THE CONDITION OF PH 3.8 AND 310K

Tate, S., Tate, N.U., Ushioda, T., Samejima, T., Kainosho, M.

(1995) Biochemistry 34: 14637-14648

Released	1995-12-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CYSTATIN A (protein)

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1CYV \| pdb_00001cyv	Download File View File

SOLUTION NMR STRUCTURE OF RECOMBINANT HUMAN CYSTATIN A UNDER THE CONDITION OF PH 3.8 AND 310K

Tate, S., Tate, N.U., Ushioda, T., Samejima, T., Kainosho, M.

(1995) Biochemistry 34: 14637-14648

Released	1995-12-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CYSTATIN A (protein)

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1DUF \| pdb_00001duf	Download File View File

THE NMR STRUCTURE OF DNA DODECAMER DETERMINED IN AQUEOUS DILUTE LIQUID CRYSTALLINE PHASE

Tjandra, N., Tate, S., Ono, A., Kainosho, M., Bax, A.

(2000) J Am Chem Soc 122: 6190-6200

Released	2000-07-14
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3') (nucleic acid)

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1F53 \| pdb_00001f53	Download File View File

NMR STRUCTURE OF KILLER TOXIN-LIKE PROTEIN SKLP

Ohki, S., Kariya, E., Hiraga, K., Wakamiya, A., Isobe, T., Oda, K., Kainosho, M.

(2001) J Mol Biology 305: 109-120

Released	2000-12-27
Method	SOLUTION NMR
Organisms	Streptomyces sp.
Macromolecule	YEAST KILLER TOXIN-LIKE PROTEIN (protein)

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1GD3 \| pdb_00001gd3	Download File View File

refined solution structure of human cystatin A

Shimba, N., Kariya, E., Tate, S., Kaji, H., Kainosho, M.

(2000) J Struct Funct Genomics 1: 26-42

Released	2001-09-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CYSTATIN A (protein)

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1GD4 \| pdb_00001gd4	Download File View File

SOLUTION STRUCTURE OF P25S CYSTATIN A

Shimba, N., Kariya, E., Tate, S., Kaji, H., Kainosho, M.

(2000) J Struct Funct Genomics 1: 26-42

Released	2001-09-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CYSTATIN A (protein)

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1GIP \| pdb_00001gip	Download File View File

THE NMR STRUCTURE OF DNA DODECAMER DETERMINED IN AQUEOUS DILUTE LIQUID CRYSTALLINE PHASE

Clore, G.M., Kuszewski, J.

(2001) J Am Chem Soc 123: 3903-3918

Released	2001-08-01
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3' (nucleic acid)

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1IQ5 \| pdb_00001iq5	Download File View File

Calmodulin/nematode CA2+/Calmodulin dependent kinase kinase fragment

Kurokawa, H., Osawa, M., Kurihara, H., Katayama, N., Tokumitsu, H., Swindells, M.B., Kainosho, M., Ikura, M.

(2001) J Mol Biology 312: 59-68

Released	2001-09-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Caenorhabditis elegans Xenopus laevis
Macromolecule	CA2+/CALMODULIN DEPENDENT KINASE KINASE (protein) CALMODULIN (protein)
Unique Ligands	CA

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1J2M \| pdb_00001j2m	Download File View File

Solution structure of CPI-17(22-120)

Ohki, S., Eto, M., Takada, R., Shimizu, M., Brautigan, D.L., Kainosho, M.

(2003) J Mol Biology 326: 1539-1547

Released	2003-06-17
Method	SOLUTION NMR
Organisms	Sus scrofa
Macromolecule	17-kDa PKC-potentiated inhibitory protein of PP1 (protein)

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1J2N \| pdb_00001j2n	Download File View File

Solution structure of CPI-17(22-120) T38D

Ohki, S., Eto, M., Shimizu, M., Takada, R., Brautigan, D.L., Kainosho, M.

(2003) J Mol Biology 326: 1539-1547

Released	2003-06-17
Method	SOLUTION NMR
Organisms	Sus scrofa
Macromolecule	17-kDa PKC-potentiated inhibitory protein of PP1 (protein)

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1JO7 \| pdb_00001jo7	Download File View File

Solution Structure of Influenza A Virus Promoter

Bae, S.-H., Cheong, H.-K., Lee, J.-H., Cheong, C., Kainosho, M., Choi, B.-S.

(2001) Proc Natl Acad Sci U S A 98: 10602-10607

Released	2001-09-19
Method	SOLUTION NMR
Macromolecule	Influenza A virus promoter RNA (nucleic acid)

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1K5O \| pdb_00001k5o	Download File View File

CPI-17(35-120) deletion mutant

Ohki, S., Eto, M., Kariya, E., Hayano, T., Hayashi, Y., Yazawa, M., Brautigan, D., Kainosho, M.

(2001) J Mol Biology 314: 839-849

Released	2002-10-11
Method	SOLUTION NMR
Organisms	Sus scrofa
Macromolecule	CPI-17 (protein)

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1MG8 \| pdb_00001mg8	Download File View File

NMR structure of ubiquitin-like domain in murine Parkin

Tashiro, M., Okubo, S., Shimotakahara, S., Hatanaka, H., Yasuda, H., Kainosho, M., Yokoyama, S., Shindo, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) J Biomol NMR 25: 153-156

Released	2003-04-08
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Parkin (protein)

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1X02 \| pdb_00001x02	Download File View File

Solution structure of stereo array isotope labeled (SAIL) calmodulin

Kainosho, M., Torizawa, T., Terauchi, T., Ono, A.M., Guntert, P.

(2006) Nature 440: 52-57

Released	2006-03-07
Method	SOLUTION NMR
Organisms	Xenopus laevis
Macromolecule	calmodulin (protein)
Unique Ligands	CA

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2BA3 \| pdb_00002ba3	Download File View File

NMR Structure of NikA N-terminal Fragment

Yoshida, H., Furuya, N., Lin, Y.J., Guntert, P., Komano, T., Kainosho, M.

To be published

Released	2006-10-03
Method	SOLUTION NMR
Organisms	Plasmid R64
Macromolecule	NikA (protein)

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2D21 \| pdb_00002d21	Download File View File

NMR Structure of stereo-array isotope labelled (SAIL) maltodextrin-binding protein (MBP)

Kainosho, M., Torizawa, T., Iwashita, Y., Terauchi, T., Ono, A.M., Guntert, P.

(2006) Nature 440: 52-57

Released	2006-03-07
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Maltose-binding periplasmic protein (protein)

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2JW8 \| pdb_00002jw8	Download File View File

Solution structure of stereo-array isotope labelled (SAIL) C-terminal dimerization domain of SARS coronavirus nucleocapsid protein

Takeda, M., Chang, C., Ikeya, T., Guntert, P., Chang, Y., Hsu, Y., Huang, T., Kainosho, M.

(2008) J Mol Biology 380: 608-622

Released	2008-08-26
Method	SOLUTION NMR
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	Nucleocapsid protein (protein)

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2JZ4 \| pdb_00002jz4	Download File View File

Putative 32 kDa myrosinase binding protein At3g16450.1 from Arabidopsis thaliana

Takeda, N., Sugimori, N., Torizawa, T., Terauchi, T., Ono, A.M., Yagi, H., Yamaguchi, Y., Kato, K., Ikeya, T., Guntert, P., Aceti, D.J., Markley, J.L., Kainosho, M., Center for Eukaryotic Structural Genomics (CESG)

(2008) FEBS J 275: 5873-5884

Released	2008-02-19
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	Jasmonate inducible protein isolog (protein)

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2L6X \| pdb_00002l6x	Download File View File

Solution NMR Structure of Proteorhodopsin.

Reckel, S., Gottstein, D., Stehle, J., Loehr, F., Takeda, M., Silvers, R., Kainosho, M., Glaubitz, C., Bernhard, F., Schwalbe, H., Guntert, P., Doetsch, V., Membrane Protein Structures by Solution NMR (MPSbyNMR)

(2011) Angew Chem Int Ed Engl 50: 11942-11946

Released	2011-11-09
Method	SOLUTION NMR
Organisms	uncultured marine gamma proteobacterium EBAC31A08
Macromolecule	Green-light absorbing proteorhodopsin (protein)
Unique Ligands	RET

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2RS4 \| pdb_00002rs4	Download File View File

NMR structure of stereo-array isotope labelled (SAIL) peptidyl-prolyl cis-trans isomerase from E. coli (EPPIb)

Takeda, M., Jee, J., Ono, A.M., Okuma, K., Terauchi, T., Kainosho, M.

(2011) J Am Chem Soc 133: 17420-17427

Released	2011-10-12
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	Peptidyl-prolyl cis-trans isomerase B (protein)

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3VVI \| pdb_00003vvi	Download File View File

Crystal structure of the coiled-coil domain of the transient receptor potential channel from Gibberella zeae (TRPGz)

Ihara, M., Yamashita, A.

(2013) J Biological Chem 288: 15303-15317

Released	2013-04-10
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Fusarium graminearum PH-1
Macromolecule	Non selective cation channel homologous to TRP channel (protein)
Unique Ligands	ACT

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5NJJ \| pdb_00005njj	Download File View File

PTB domain of human Numb isoform-1

Mapelli, M., Di Fiore, P.P.

(2018) J Cell Biol 217: 745-762

Released	2017-12-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	ALA-TYR-ILE-GLY-PRO-PTR-LEU (protein) Protein numb homolog (protein)
Unique Ligands	SO4

1 to 25 of 27 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1BHU | pdb_00001bhu

1BXD | pdb_00001bxd

1C4L | pdb_00001c4l

1CYU | pdb_00001cyu

1CYV | pdb_00001cyv

1DUF | pdb_00001duf

1F53 | pdb_00001f53

1GD3 | pdb_00001gd3

1GD4 | pdb_00001gd4

1GIP | pdb_00001gip

1IQ5 | pdb_00001iq5

1J2M | pdb_00001j2m

1J2N | pdb_00001j2n

1JO7 | pdb_00001jo7

1K5O | pdb_00001k5o

1MG8 | pdb_00001mg8

1X02 | pdb_00001x02

2BA3 | pdb_00002ba3

2D21 | pdb_00002d21

2JW8 | pdb_00002jw8

2JZ4 | pdb_00002jz4

2L6X | pdb_00002l6x

2RS4 | pdb_00002rs4

3VVI | pdb_00003vvi

5NJJ | pdb_00005njj