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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kitamura, K."

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Search Summary

This query matches 24 Structures.

Refinements

Structure Determination Methodology

experimental (24)

Scientific Name of Source Organism

	Bos taurus (10)
	Homo sapiens (9)
	Carica papaya (2)
	Cocos nucifera (1)
	Glycine max (1)
	Mus musculus (1)

Taxonomy

Eukaryota (24)

Experimental Method

X-RAY DIFFRACTION (24)

Polymer Entity Type

Protein (24)

Refinement Resolution (Å)

	1.5 - 2.0 (11)
	2.0 - 2.5 (11)
	2.5 - 3.0 (2)

Release Date

	1990 - 1994 (2)
	2000 - 2004 (5)
	2005 - 2009 (11)
	2015 - 2019 (5)
	2020 - 2024 (1)

Enzyme Classification Name

	Transferases (7)
	Hydrolases (12)
	Ligases (1)

Symmetry Type

	Asymmetric (22)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a+b) (16)
	All beta proteins (1)
	Artifacts (1)

AllSelected

1 to 24 of 24 Structures

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1IPB \| pdb_00001ipb	Download File View File

CRYSTAL STRUCTURE OF EUKARYOTIC INITIATION FACTOR 4E COMPLEXED WITH 7-METHYL GPPPA

Tomoo, K., Shen, X., Okabe, K., Nozoe, Y., Fukuhara, S., Morino, S., Ishida, T., Taniguchi, T., Hasegawa, H., Terashima, A., Sasaki, M., Katsuya, Y., Kitamura, K., Miyoshi, H., Ishikawa, M., Miura, K.

(2002) Biochem J 362: 539-544

Released	2002-05-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E (protein)
Unique Ligands	GTA

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1IPC \| pdb_00001ipc	Download File View File

CRYSTAL STRUCTURE OF EUKARYOTIC INITIATION FACTOR 4E COMPLEXED WITH 7-METHYL GTP

(2002) Biochem J 362: 539-544

Released	2002-05-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E (protein)
Unique Ligands	MGP

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1ITO \| pdb_00001ito	Download File View File

Crystal Structure Analysis of Bovine Spleen Cathepsin B-E64c complex

Yamamoto, A., Tomoo, T., Matsugi, K., Hara, T., In, Y., Murata, M., Kitamura, K., Ishida, T.

(2002) Biochim Biophys Acta 1597: 244-251

Released	2003-01-19
Method	X-RAY DIFFRACTION 2.286 Å
Organisms	Bos taurus
Macromolecule	Cathepsin B (protein)
Unique Ligands	E6C

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1OD5 \| pdb_00001od5	Download File View File

Crystal structure of glycinin A3B4 subunit homohexamer

Adachi, M., Kanamori, J., Masuda, T., Yagasaki, K., Kitamura, K., Mikami, B., Utsumi, S.

(2003) Proc Natl Acad Sci U S A 100: 7395

Released	2003-06-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Glycine max
Macromolecule	GLYCININ (protein)
Unique Ligands	CO3, MG

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1PE6 \| pdb_00001pe6	Download File View File

REFINED X-RAY STRUCTURE OF PAPAIN(DOT)E-64-C COMPLEX AT 2.1-ANGSTROMS RESOLUTION

Yamamoto, D., Matsumoto, K., Ohishi, H., Ishida, T., Inoue, M., Kitamura, K., Mizuno, H.

(1991) J Biological Chem 266: 14771-14777

Released	1993-04-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Carica papaya
Macromolecule	PAPAIN (protein)
Unique Ligands	E6C, MOH

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1PPP \| pdb_00001ppp	Download File View File

CRYSTAL STRUCTURE OF PAPAIN-E64-C COMPLEX. BINDING DIVERSITY OF E64-C TO PAPAIN S2 AND S3 SUBSITES

Ishida, T.

(1992) Biochem J 287: 797-803

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Carica papaya
Macromolecule	PAPAIN (protein)
Unique Ligands	E6C, MOH

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1QDQ \| pdb_00001qdq	Download File View File

X-RAY CRYSTAL STRUCTURE OF BOVINE CATHEPSIN B-CA074 COMPLEX

Yamamoto, A.

(2000) J Biochem 127: 635-643

Released	2000-07-10
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Bos taurus
Macromolecule	CATHEPSIN B (protein)
Unique Ligands	074

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1WKW \| pdb_00001wkw	Download File View File

Crystal structure of the ternary complex of eIF4E-m7GpppA-4EBP1 peptide

Tomoo, K., Matsushita, Y., Fujisaki, H., Shen, X., Miyagawa, H., Kitamura, K., Miura, K., Ishida, T.

(2005) Biochim Biophys Acta 1753: 191-208

Released	2005-06-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein) Eukaryotic translation initiation factor 4E binding protein 1 (protein)
Unique Ligands	GTA

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1XGF \| pdb_00001xgf	Download File View File

Backbone Structure of COCOSIN, an 11S storage protein from cocos nucifera

Balasundaresan, D., Ponnuswamy, M.N.

To be published

Released	2005-11-29
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Cocos nucifera
Macromolecule	cocosin (protein)

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2DC6 \| pdb_00002dc6	Download File View File

X-ray crystal structure analysis of bovine spleen cathepsin B-CA073 complex

Watanabe, D.

To be published

Released	2006-01-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bos taurus
Macromolecule	cathepsin B (protein)
Unique Ligands	73V, GOL, PO4

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2DC7 \| pdb_00002dc7	Download File View File

X-ray crystal structure analysis of bovine spleen cathepsin B-CA042 complex

Watanabe, D.

To be published

Released	2006-01-24
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Bos taurus
Macromolecule	CATHEPSIN B (protein)
Unique Ligands	042, GOL, PO4

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2DC8 \| pdb_00002dc8	Download File View File

X-ray crystal structure analysis of bovine spleen cathepsin B-CA059 complex

Watanabe, D.

To be published

Released	2006-01-24
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Bos taurus
Macromolecule	CATHEPSIN B (protein)
Unique Ligands	59A, GOL, PO4

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2DC9 \| pdb_00002dc9	Download File View File

X-ray crystal structure analysis of bovine spleen cathepsin B-CA074Me complex

Watanabe, D.

To be published

Released	2006-01-24
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Bos taurus
Macromolecule	CATHEPSIN B (protein)
Unique Ligands	74M, GOL, PO4

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2DCA \| pdb_00002dca	Download File View File

X-ray crystal structure analysis of bovine spleen cathepsin B-CA075 complex

Watanabe, D.

To be published

Released	2006-01-24
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Bos taurus
Macromolecule	CATHEPSIN B (protein)
Unique Ligands	75V, GOL, PO4

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2DCB \| pdb_00002dcb	Download File View File

X-ray crystal structure analysis of bovine spleen cathepsin B-CA076 complex

Watanabe, D.

To be published

Released	2006-01-24
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Bos taurus
Macromolecule	CATHEPSIN B (protein)
Unique Ligands	76V, GOL, PO4

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2DCC \| pdb_00002dcc	Download File View File

X-ray crystal structure analysis of bovine spleen cathepsin B-CA077 complex

Watanabe, D.

To be published

Released	2006-01-24
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Bos taurus
Macromolecule	CATHEPSIN B (protein)
Unique Ligands	77B, GOL, PO4

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2DCD \| pdb_00002dcd	Download File View File

X-ray crystal structure analysis of bovine spleen cathepsin B-CA078 complex

Watanabe, D.

To be published

Released	2006-01-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bos taurus
Macromolecule	CATHEPSIN B (protein)
Unique Ligands	78A, GOL, PO4

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2ZEQ \| pdb_00002zeq	Download File View File

Crystal structure of ubiquitin-like domain of murine Parkin

Tomoo, K.

(2008) Biochim Biophys Acta 1784: 1059-1067

Released	2008-08-19
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Mus musculus
Macromolecule	E3 ubiquitin-protein ligase parkin (protein)

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5ZQO \| pdb_00005zqo	Download File View File

Tankyrase-2 in complex with compound 1a

Niwa, H., Shirai, F., Sato, S., Yoshimoto, N., Tsumura, T., Okue, M., Shirouzu, M., Seimiya, H., Umehara, T.

(2019) J Med Chem 62: 3407-3427

Released	2019-04-03
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Homo sapiens
Macromolecule	Tankyrase-2 (protein)
Unique Ligands	9GX, GOL, SO4, ZN

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5ZQP \| pdb_00005zqp	Download File View File

Tankyrase-2 in complex with compound 12

Niwa, H., Shirai, F., Sato, S., Yoshimoto, N., Tsumura, T., Okue, M., Shirouzu, M., Seimiya, H., Umehara, T.

(2019) J Med Chem 62: 3407-3427

Released	2019-04-03
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Homo sapiens
Macromolecule	Tankyrase-2 (protein)
Unique Ligands	9H3, GOL, PO4, ZN

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5ZQQ \| pdb_00005zqq	Download File View File

Tankyrase-2 in complex with compound 52

Niwa, H., Shirai, F., Sato, S., Yoshimoto, N., Tsumura, T., Okue, M., Shirouzu, M., Seimiya, H., Umehara, T.

(2019) J Med Chem 62: 3407-3427

Released	2019-04-03
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Homo sapiens
Macromolecule	Tankyrase-2 (protein)
Unique Ligands	9H6, GOL, PO4, ZN

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5ZQR \| pdb_00005zqr	Download File View File

Tankyrase-2 in complex with compound 40c

Niwa, H., Shirai, F., Sato, S., Yoshimoto, N., Tsumura, T., Okue, M., Shirouzu, M., Seimiya, H., Umehara, T.

(2019) J Med Chem 62: 3407-3427

Released	2019-04-03
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Tankyrase-2 (protein)
Unique Ligands	9H9, GOL, PO4, ZN

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6A84 \| pdb_00006a84	Download File View File

Tankyrase-2 in complex with compound 15d

Niwa, H., Shirai, F., Sato, S., Yoshimoto, N., Tsumura, T., Okue, M., Shirouzu, M., Seimiya, H., Umehara, T.

(2019) J Med Chem 62: 3407-3427

Released	2019-04-03
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Homo sapiens
Macromolecule	Tankyrase-2 (protein)
Unique Ligands	9SU, GOL, PO4, ZN

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6KRO \| pdb_00006kro	Download File View File

Tankyrase-2 in complex with RK-582

Niwa, H., Shirai, F., Sato, S., Tsumura, T., Okue, M., Shirouzu, M., Seimiya, H., Umehara, T.

(2020) J Med Chem 63: 4183-4204

Released	2020-04-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Tankyrase-2 (protein)
Unique Ligands	DU9, GOL, PO4, ZN

1 to 24 of 24 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1IPB | pdb_00001ipb

1IPC | pdb_00001ipc

1ITO | pdb_00001ito

1OD5 | pdb_00001od5

1PE6 | pdb_00001pe6

1PPP | pdb_00001ppp

1QDQ | pdb_00001qdq

1WKW | pdb_00001wkw

1XGF | pdb_00001xgf

2DC6 | pdb_00002dc6

2DC7 | pdb_00002dc7

2DC8 | pdb_00002dc8

2DC9 | pdb_00002dc9

2DCA | pdb_00002dca

2DCB | pdb_00002dcb

2DCC | pdb_00002dcc

2DCD | pdb_00002dcd

2ZEQ | pdb_00002zeq

5ZQO | pdb_00005zqo

5ZQP | pdb_00005zqp

5ZQQ | pdb_00005zqq

5ZQR | pdb_00005zqr

6A84 | pdb_00006a84

6KRO | pdb_00006kro