RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Kumeta, H."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 70 Structures.

Refinements

Structure Determination Methodology

experimental (70)

Scientific Name of Source Organism

	Homo sapiens (22)
	Saccharomyces cerevisiae (12)
	Saccharomyces cerevisiae S288C (11)
	Mus musculus (7)
	Rattus norvegicus (5)
	Oryza sativa (3)
	Ascaris suum (2)
	Helicobacter pylori 26695 (2)
	Kluyveromyces marxianus (2)
	Zoarces elongatus (2)

More...

Taxonomy

	Eukaryota (66)
	Bacteria (5)
	Eukaryota (eukaryotes) (1)

Experimental Method

	SOLUTION NMR (51)
	X-RAY DIFFRACTION (19)

Polymer Entity Type

Protein (70)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (3)
	2.5 - 3.0 (6)
	3.0 - 3.5 (6)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (26)
	2010 - 2014 (25)
	2015 - 2019 (13)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (19)
	Transferases (5)
	Ligases (2)
	Isomerases (1)
	Oxidoreductases (1)

Membrane Protein Annotation

OPM (3)

Symmetry Type

	Asymmetric (64)
	Cyclic (4)
	Tetrahedral (2)

SCOP Classification

	Alpha and beta proteins (a+b) (18)
	Artifacts (14)
	All beta proteins (7)
	All alpha proteins (5)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 70 Structures

Page 1 of 3

Sort by

Explore in 3D

1IY3 \| pdb_00001iy3	Download File View File

Solution Structure of the Human lysozyme at 4 degree C

Kumeta, H., Miura, A., Kobashigawa, Y., Miura, K., Oka, C., Nitta, K., Nemoto, N., Tsuda, S.

(2003) Biochemistry 42: 1209-1216

Released	2002-07-31
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Lysozyme (protein)

Explore in 3D

1IY4 \| pdb_00001iy4	Download File View File

Solution structure of the human lysozyme at 35 degree C

Kumeta, H., Miura, A., Kobashigawa, Y., Miura, K., Oka, C., Nitta, K., Nemoto, N., Tsuda, S.

(2003) Biochemistry 42: 1209-1216

Released	2002-07-31
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Lysozyme (protein)

Explore in 3D

1TH5 \| pdb_00001th5	Download File View File

Solution structure of C-terminal domain of NifU-like protein from Oryza sativa

Kumeta, H., Ogura, K., Asayama, M., Katoh, S., Katoh, E., Inagaki, F.

(2007) J Biomol NMR 38: 161-164

Released	2005-09-27
Method	SOLUTION NMR
Organisms	Oryza sativa
Macromolecule	NifU1 (protein)

Explore in 3D

1WMJ \| pdb_00001wmj	Download File View File

Solution structure of Thioredoxin type h from Oryza sativa

Kumeta, H., Ogura, H., Akagi, K., Katoh, E., Inagaki, F.

To be published

Released	2005-10-25
Method	SOLUTION NMR
Organisms	Oryza sativa
Macromolecule	Thioredoxin H-type (protein)

Explore in 3D

2CZO \| pdb_00002czo	Download File View File

Solution Structure of the PX Domain of Bem1p

Maeda, A., Ogura, K., Horiuchi, M., Kumeta, H., Fujioka, Y., Inagaki, F.

To be published

Released	2006-10-03
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Bud emergence protein 1 (protein)

Explore in 3D

2DVJ \| pdb_00002dvj	Download File View File

phosphorylated Crk-II

Kobashigawa, Y., Inagaki, F.

(2007) Nat Struct Mol Biol 14: 503-510

Released	2007-05-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	V-crk sarcoma virus CT10 oncogene homolog, isoform a (protein)

Explore in 3D

2DYT \| pdb_00002dyt	Download File View File

The crystal structure of Saccharomyces cerevisiae Atg3

Yamada, Y., Suzuki, N.N., Inagaki, F.

(2007) J Biological Chem 282: 8036-8043

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Autophagy-related protein 3 (protein)
Unique Ligands	SO4

Explore in 3D

2EYV \| pdb_00002eyv	Download File View File

SH2 domain of CT10-Regulated Kinase

Kobashigawa, Y., Tanaka, S., Inagaki, F.

(2007) Nat Struct Mol Biol 14: 503-510

Released	2006-11-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	v-crk sarcoma virus CT10 oncogene homolog isoform a (protein)

Explore in 3D

2EYW \| pdb_00002eyw	Download File View File

N-terminal SH3 domain of CT10-Regulated Kinase

Kobashigawa, Y., Tanaka, S., Inagaki, F.

(2007) Nat Struct Mol Biol 14: 503-510

Released	2006-11-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	v-crk sarcoma virus CT10 oncogene homolog isoform a (protein)

Explore in 3D

2EYX \| pdb_00002eyx	Download File View File

C-Terminal SH3 domain of CT10-Regulated Kinase

Kobashigawa, Y., Tanaka, S., Inagaki, F.

(2007) Nat Struct Mol Biol 14: 503-510

Released	2006-11-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	v-crk sarcoma virus CT10 oncogene homolog isoform a (protein)

Explore in 3D

2EYY \| pdb_00002eyy	Download File View File

CT10-Regulated Kinase isoform I

Kobashigawa, Y., Tanaka, S., Inagaki, F.

(2007) Nat Struct Mol Biol 14: 503-510

Released	2006-11-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	v-crk sarcoma virus CT10 oncogene homolog isoform a (protein)

Explore in 3D

2EYZ \| pdb_00002eyz	Download File View File

CT10-Regulated Kinase isoform II

Kobashigawa, Y., Tanaka, S., Inagaki, F.

(2007) Nat Struct Mol Biol 14: 503-510

Released	2006-11-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	v-crk sarcoma virus CT10 oncogene homolog isoform a (protein)

Explore in 3D

2JNV \| pdb_00002jnv	Download File View File

Solution structure of C-terminal domain of NifU-like protein from Oryza sativa

Saio, T., Ogura, K., Kumeta, H., Yokochi, M., Katoh, S., Katoh, E., Inagaki, F., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2007) J Biochem 142: 113-121

Released	2007-12-18
Method	SOLUTION NMR
Organisms	Oryza sativa
Macromolecule	NifU-like protein 1, chloroplast (protein)

Explore in 3D

2JPE \| pdb_00002jpe	Download File View File

FHA domain of NIPP1

Kumeta, H., Ogura, K., Fujioka, Y., Tanuma, N., Kikuchi, K., Inagaki, F.

(2008) J Biomol NMR 40: 219-224

Released	2007-05-15
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Nuclear inhibitor of protein phosphatase 1 (protein)

Explore in 3D

2K6Q \| pdb_00002k6q	Download File View File

LC3 p62 complex structure

Noda, N., Kumeta, H., Nakatogawa, H., Satoo, K., Adachi, W., Ishii, J., Fujioka, Y., Ohsumi, Y., Inagaki, F.

To be published

Released	2008-09-02
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	Microtubule-associated proteins 1A/1B light chain 3B (protein) p62_peptide from Sequestosome-1 (protein)

Explore in 3D

2KBT \| pdb_00002kbt	Download File View File

Attachment of an NMR-invisible solubility enhancement tag (INSET) using a sortase-mediated protein ligation method

Kumeta, H., Kobashigawa, Y., Ogura, K., Inagaki, F.

(2009) J Biomol NMR 43: 145-150

Released	2009-02-03
Method	SOLUTION NMR
Organisms	Mus musculus Streptococcus sp. 'group G
Macromolecule	Proto-oncogene vav,Immunoglobulin G-binding protein G (protein)

Explore in 3D

2KE4 \| pdb_00002ke4	Download File View File

The NMR structure of the TC10 and Cdc42 interacting domain of CIP4

Kumeta, H., Kanoh, D., Kobashigawa, Y., Inagaki, F.

(2009) J Biomol NMR 44: 113-118

Released	2009-03-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Cdc42-interacting protein 4 (protein)

Explore in 3D

2KFJ \| pdb_00002kfj	Download File View File

Solution structure of the loop deletion mutant of PB1 domain of Cdc24p

Ogura, K., Tandai, T., Yoshinaga, S., Kobashigawa, Y., Kumeta, H., Inagaki, F.

(2009) J Biochem 146: 317-325

Released	2009-10-06
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Cell division control protein 24 (protein)

Explore in 3D

2KFK \| pdb_00002kfk	Download File View File

Solution structure of Bem1p PB1 domain complexed with Cdc24p PB1 domain

Kobashigawa, Y., Yoshinaga, S., Tandai, T., Ogura, K., Inagaki, F.

(2009) J Biochem 146: 317-325

Released	2009-10-06
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Bud emergence protein 1 (protein) Cell division control protein 24 (protein)