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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kurochkina, L.P."

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Tequatrovirus T4 (11)
	Phikzvirus phiKZ (3)
	Pseudomonas phage OBP (1)

Taxonomy

Duplodnaviria (15)

Experimental Method

	X-RAY DIFFRACTION (8)
	ELECTRON MICROSCOPY (7)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (5)
	3.5 - 4.0 (1)
	> 4.5 (7)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (4)
	2005 - 2009 (4)
	2010 - 2014 (3)
	2015 - 2019 (1)

Symmetry Type

	Cyclic (11)
	Asymmetric (4)
	Dihedral (1)
	Octahedral (1)

SCOP Classification

	Low resolution protein structures (2)
	All beta proteins (2)
	Coiled coil proteins (2)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 15 of 15 Structures

Page 1 of 1

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1AA0 \| pdb_00001aa0	Download File View File

FIBRITIN DELETION MUTANT E (BACTERIOPHAGE T4)

Tao, Y., Strelkov, S.V., Mesyanzhinov, V.V., Rossmann, M.G.

(1997) Structure 5: 789-798

Released	1997-07-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Tequatrovirus T4
Macromolecule	FIBRITIN (protein)
Unique Ligands	CL, ZN

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1AVY \| pdb_00001avy	Download File View File

FIBRITIN DELETION MUTANT M (BACTERIOPHAGE T4)

Strelkov, S.V., Tao, Y., Mesyanzhinov, V.V., Rossmann, M.G.

(1998) Acta Crystallogr D Biol Crystallogr 54: 805-816

Released	1997-12-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Tequatrovirus T4
Macromolecule	FIBRITIN (protein)

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1EL6 \| pdb_00001el6	Download File View File

STRUCTURE OF BACTERIOPHAGE T4 GENE PRODUCT 11, THE INTERFACE BETWEEN THE BASEPLATE AND SHORT TAIL FIBERS

Leiman, P.G., Kostyuchenko, V.A., Schneider, M.M., Kurochkina, L.P., Mesyanzhinov, V.V., Rossmann, M.G.

(2000) J Mol Biology 301: 975-985

Released	2000-04-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tequatrovirus T4
Macromolecule	BASEPLATE STRUCTURAL PROTEIN GP11 (protein)

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1PDF \| pdb_00001pdf	Download File View File

Fitting of gp11 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 baseplate-tail tube complex

Kostyuchenko, V.A., Leiman, P.G., Chipman, P.R., Kanamaru, S., van Raaij, M.J., Arisaka, F., Mesyanzhinov, V.V., Rossmann, M.G.

(2003) Nat Struct Biol 10: 688-693

Released	2003-09-09
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Tequatrovirus T4
Macromolecule	Baseplate structural protein Gp11 (protein)

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1PDP \| pdb_00001pdp	Download File View File

Fitting of gp9 structure into the bacteriophage T4 baseplate cryoEM reconstruction

Kostyuchenko, V.A., Leiman, P.G., Chipman, P.R., Kanamaru, S., van Raaij, M.J., Arisaka, F., Mesyanzhinov, V.V., Rossmann, M.G.

(2003) Nat Struct Biol 10: 688-693

Released	2003-09-09
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Tequatrovirus T4
Macromolecule	Baseplate structural protein Gp9 (protein)

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1QEX \| pdb_00001qex	Download File View File

BACTERIOPHAGE T4 GENE PRODUCT 9 (GP9), THE TRIGGER OF TAIL CONTRACTION AND THE LONG TAIL FIBERS CONNECTOR

Kostyuchenko, V.A., Navruzbekov, G.A., Kurochkina, L.P., Strelkov, S.V., Mesyanzhinov, V.V., Rossmann, M.G.

(1999) Structure 7: 1213-1222

Released	1999-10-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Tequatrovirus T4
Macromolecule	PROTEIN (BACTERIOPHAGE T4 GENE PRODUCT 9 (GP9)) (protein)
Unique Ligands	EPE

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1S2E \| pdb_00001s2e	Download File View File

BACTERIOPHAGE T4 GENE PRODUCT 9 (GP9), THE TRIGGER OF TAIL CONTRACTION AND THE LONG TAIL FIBERS CONNECTOR, ALTERNATIVE FIT OF THE FIRST 19 RESIDUES

Kostyuchenko, V.A., Navruzbekov, G.A., Kurochkina, L.P., Strelkov, S.V., Mesyanzhinov, V.V., Rossmann, M.G.

(1999) Structure 7: 1213-1222

Released	2004-01-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Tequatrovirus T4
Macromolecule	Baseplate structural protein Gp9 (protein)
Unique Ligands	EPE

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3FO8 \| pdb_00003fo8	Download File View File

Crystal structure of the bacteriophage T4 tail sheath protein, protease resistant fragment gp18PR

Aksyuk, A.A., Leiman, P.G., Kurochkina, L.P., Shneider, M.M., Kostyuchenko, V.A., Mesyanzhinov, V.V., Rossmann, M.G.

(2009) EMBO J 28: 821-829

Released	2009-03-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Tequatrovirus T4
Macromolecule	Tail sheath protein Gp18 (protein)
Unique Ligands	ACT

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3FOA \| pdb_00003foa	Download File View File

Crystal structure of the bacteriophage T4 tail sheath protein, deletion mutant gp18M

Aksyuk, A.A., Leiman, P.G., Kurochkina, L.P., Shneider, M.M., Kostyuchenko, V.A., Mesyanzhinov, V.V., Rossmann, M.G.

(2009) EMBO J 28: 821-829

Released	2009-03-10
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Tequatrovirus T4
Macromolecule	Tail sheath protein Gp18 (protein)

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3FOH \| pdb_00003foh	Download File View File

Fitting of gp18M crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 extended tail

Aksyuk, A.A., Leiman, P.G., Kurochkina, L.P., Shneider, M.M., Kostyuchenko, V.A., Mesyanzhinov, V.V., Rossmann, M.G.

(2009) EMBO J 28: 821-829

Released	2009-03-10
Method	ELECTRON MICROSCOPY 15 Å
Organisms	Tequatrovirus T4
Macromolecule	Tail sheath protein Gp18 (protein)

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3FOI \| pdb_00003foi	Download File View File

Fitting of gp18M crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 contracted tail

Aksyuk, A.A., Leiman, P.G., Kurochkina, L.P., Shneider, M.M., Kostyuchenko, V.A., Mesyanzhinov, V.V., Rossmann, M.G.

(2009) EMBO J 28: 821-829

Released	2009-03-10
Method	ELECTRON MICROSCOPY 16 Å
Organisms	Tequatrovirus T4
Macromolecule	Tail sheath protein Gp18 (protein)

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3J0H \| pdb_00003j0h	Download File View File

Fitting of the bacteriophage phiKZ gp29PR structure into the cryo-EM density map of the phiKZ extended tail sheath

Aksyuk, A.A., Fokine, A., Kurochkina, L.P., Mesyanzhinov, V.V., Rossmann, M.G.

(2011) Structure 19: 1885-1894

Released	2011-12-14
Method	ELECTRON MICROSCOPY 18 Å
Organisms	Phikzvirus phiKZ
Macromolecule	PHIKZ029 (protein)

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3J0I \| pdb_00003j0i	Download File View File

Fitting of the phiKZ gp29PR structure into the cryo-EM density map of the phiKZ polysheath

Aksyuk, A.A., Fokine, A., Kurochkina, L.P., Mesyanzhinov, V.V., Rossmann, M.G.

(2011) Structure 19: 1885-1894

Released	2011-12-14
Method	ELECTRON MICROSCOPY 19 Å
Organisms	Phikzvirus phiKZ
Macromolecule	PHIKZ029 (protein)

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3SPE \| pdb_00003spe	Download File View File

Crystal structure of the tail sheath protein protease resistant fragment from bacteriophage phiKZ

Aksyuk, A.A., Kurochkina, L.P., Fokine, A., Mesyanzhinov, V.V., Rossmann, M.G.

(2011) Structure 19: 1885-1894

Released	2011-12-14
Method	X-RAY DIFFRACTION 2.3996 Å
Organisms	Phikzvirus phiKZ
Macromolecule	PHIKZ029 (protein)
Unique Ligands	GOL, PO4

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6HDD \| pdb_00006hdd	Download File View File

OBP chaperonin in the nucleotide-free state

Semenyuk, P.I., Stanishneva-Konovalova, T.B., Sokolova, O.S.

(2020) J Struct Biol 209: 107439-107439

Released	2019-08-28
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Pseudomonas phage OBP
Macromolecule	Putative chaperonin GroEL (protein)

1 to 15 of 15 Structures

Page 1 of 1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1AA0 | pdb_00001aa0

FIBRITIN DELETION MUTANT E (BACTERIOPHAGE T4)

1AVY | pdb_00001avy

FIBRITIN DELETION MUTANT M (BACTERIOPHAGE T4)

1EL6 | pdb_00001el6

STRUCTURE OF BACTERIOPHAGE T4 GENE PRODUCT 11, THE INTERFACE BETWEEN THE BASEPLATE AND SHORT TAIL FIBERS

1PDF | pdb_00001pdf

Fitting of gp11 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 baseplate-tail tube complex

1PDP | pdb_00001pdp

Fitting of gp9 structure into the bacteriophage T4 baseplate cryoEM reconstruction

1QEX | pdb_00001qex

BACTERIOPHAGE T4 GENE PRODUCT 9 (GP9), THE TRIGGER OF TAIL CONTRACTION AND THE LONG TAIL FIBERS CONNECTOR

1S2E | pdb_00001s2e

BACTERIOPHAGE T4 GENE PRODUCT 9 (GP9), THE TRIGGER OF TAIL CONTRACTION AND THE LONG TAIL FIBERS CONNECTOR, ALTERNATIVE FIT OF THE FIRST 19 RESIDUES

3FO8 | pdb_00003fo8

Crystal structure of the bacteriophage T4 tail sheath protein, protease resistant fragment gp18PR

3FOA | pdb_00003foa

Crystal structure of the bacteriophage T4 tail sheath protein, deletion mutant gp18M

3FOH | pdb_00003foh

Fitting of gp18M crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 extended tail

3FOI | pdb_00003foi

Fitting of gp18M crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 contracted tail

3J0H | pdb_00003j0h

Fitting of the bacteriophage phiKZ gp29PR structure into the cryo-EM density map of the phiKZ extended tail sheath

3J0I | pdb_00003j0i

Fitting of the phiKZ gp29PR structure into the cryo-EM density map of the phiKZ polysheath

3SPE | pdb_00003spe

Crystal structure of the tail sheath protein protease resistant fragment from bacteriophage phiKZ

6HDD | pdb_00006hdd

OBP chaperonin in the nucleotide-free state

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

1AA0 | pdb_00001aa0

1AVY | pdb_00001avy

1EL6 | pdb_00001el6

1PDF | pdb_00001pdf

1PDP | pdb_00001pdp

1QEX | pdb_00001qex

1S2E | pdb_00001s2e

3FO8 | pdb_00003fo8

3FOA | pdb_00003foa

3FOH | pdb_00003foh

3FOI | pdb_00003foi

3J0H | pdb_00003j0h

3J0I | pdb_00003j0i

3SPE | pdb_00003spe

6HDD | pdb_00006hdd