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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Lindorff-Larsen, K."

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Search Summary

This query matches 62 Structures.

Refinements

Structure Determination Methodology

experimental (62)

Scientific Name of Source Organism

	Homo sapiens (45)
	Hordeum vulgare (4)
	Lama glama (3)
	Plasmodium falciparum (3)
	synthetic construct (3)
	Cellvibrio japonicus Ueda107 (2)
	Staphylococcus aureus (2)
	Arabidopsis thaliana (1)
	Cellulomonas fimi (1)
	Saccharomyces cerevisiae S288C (1)

More...

Taxonomy

	Eukaryota (55)
	Bacteria (5)
	other sequences (4)

Experimental Method

	X-RAY DIFFRACTION (43)
	ELECTRON MICROSCOPY (14)
	SOLUTION NMR (5)

Polymer Entity Type

	Protein (61)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (17)
	2.0 - 2.5 (13)
	2.5 - 3.0 (9)
	3.0 - 3.5 (4)
	3.5 - 4.0 (4)
	4.0 - 4.5 (1)
	> 4.5 (2)

Release Date

	2005 - 2009 (2)
	2015 - 2019 (24)
	2020 - 2024 (36)

Enzyme Classification Name

	Hydrolases (29)
	Translocases (10)
	Transferases (1)

Membrane Protein Annotation

	PDBTM (12)
	mpstruc (10)
	OPM (3)
	MemProtMD (2)

Symmetry Type

	Asymmetric (57)
	Cyclic (3)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (14)
	Artifacts (8)
	All beta proteins (2)
	Alpha and beta proteins (a+b) (5)

AllSelected

1 to 25 of 62 Structures

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1XQQ \| pdb_00001xqq	Download File View File

Simultaneous determination of protein structure and dynamics

Lindorff-Larsen, K., Best, R.B., DePristo, M.A., Vendruscolo, M., Dobson, C.M.

(2005) Nature 433: 128-132

Released	2005-02-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	ubiquitin (protein)

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2AAO \| pdb_00002aao	Download File View File

Regulatory apparatus of Calcium Dependent protein kinase from Arabidopsis thaliana

Chandran, V., Stollar, E.J., Lindorff-Larsen, K., Harper, J.F., Chazin, W.J., Dobson, C.M., Luisi, B.F., Christodoulou, J.

(2006) J Mol Biology 357: 400-410

Released	2005-12-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Arabidopsis thaliana
Macromolecule	Calcium-dependent protein kinase, isoform AK1 (protein)
Unique Ligands	CA

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2N7I \| pdb_00002n7i	Download File View File

NMR structure of the prolactin receptor transmembrane domain

Bugge, K., Kragelund, B.B.

(2016) Nat Commun 7: 11578-11578

Released	2016-05-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Prolactin receptor (protein)

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5J7D \| pdb_00005j7d	Download File View File

Computationally Designed Thioredoxin dF106

Horowitz, S., Johansen, N., Olsen, J.G., Winther, J.R.

(2016) J Mol Biology 428: 4361-4377

Released	2016-10-05
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	synthetic construct
Macromolecule	Designed Thioredoxin dF106 (protein)
Unique Ligands	CU

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5K9V \| pdb_00005k9v	Download File View File

Protein Tyrosine Phosphatase 1B (1-301), open state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-01
Method	X-RAY DIFFRACTION 1.898 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, TRS

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5K9W \| pdb_00005k9w	Download File View File

Protein Tyrosine Phosphatase 1B (1-301) in complex with TCS401, closed state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-01
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, OTA, TRS

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5KA0 \| pdb_00005ka0	Download File View File

Protein Tyrosine Phosphatase 1B Delta helix 7, open state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-01
Method	X-RAY DIFFRACTION 1.991 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, TRS

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5KA1 \| pdb_00005ka1	Download File View File

Protein Tyrosine Phosphatase 1B Delta helix 7 mutant in complex with TCS401, closed state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-01
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, DMS, GOL, OTA, TRS

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5KA2 \| pdb_00005ka2	Download File View File

Protein Tyrosine Phosphatase 1B YAYA (Y152A, Y153A) mutant, open state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-08
Method	X-RAY DIFFRACTION 2.071 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, TRS

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5KA3 \| pdb_00005ka3	Download File View File

Protein Tyrosine Phosphatase 1B YAYA (Y152A, Y153A) mutant in complex with TCS401, closed state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-08
Method	X-RAY DIFFRACTION 2.141 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, OTA, TRS

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5KA4 \| pdb_00005ka4	Download File View File

Protein Tyrosine Phosphatase 1B T178A mutant, open state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-08
Method	X-RAY DIFFRACTION 2.185 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)

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5KA7 \| pdb_00005ka7	Download File View File

Protein Tyrosine Phosphatase 1B T178A mutant in complex with TCS401, closed state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-08
Method	X-RAY DIFFRACTION 2.061 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, OTA, TRS

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5KA8 \| pdb_00005ka8	Download File View File

Protein Tyrosine Phosphatase 1B L192A mutant, open state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-01
Method	X-RAY DIFFRACTION 1.971 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, TRS

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5KA9 \| pdb_00005ka9	Download File View File

Protein Tyrosine Phosphatase 1B L192A mutant in complex with TCS401, open state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-01
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, OTA, TRS

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5KAA \| pdb_00005kaa	Download File View File

Protein Tyrosine Phosphatase 1B Delta helix 7, P185G mutant, open state

Choy, M.S., Machado, L.E.S.F., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-08
Method	X-RAY DIFFRACTION 1.968 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, TRS

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5KAB \| pdb_00005kab	Download File View File

Protein Tyrosine Phosphatase 1B Delta helix 7, P185G mutant in complex with TCS401, open state

Choy, M.S., Machado, L.E.S.F., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-08
Method	X-RAY DIFFRACTION 1.968 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, OTA, TRS

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5KAC \| pdb_00005kac	Download File View File

Protein Tyrosine Phosphatase 1B P185G mutant, open state

Choy, M.S., Machado, L.E.S.F., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, TRS

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5KAD \| pdb_00005kad	Download File View File

Protein Tyrosine Phosphatase 1B N193A mutant in complex with TCS401, closed state

Choy, M.S., Peti, W., Page, R.

(2017) Mol Cell 65: 644-658.e5

Released	2017-03-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 1 (protein)
Unique Ligands	CL, GOL, OTA, TRS

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6QFS \| pdb_00006qfs	Download File View File

Chargeless variant of the Cellulose-binding domain from Cellulomonas fimi

Young, D.R., Hoejgaard, C., Messens, J., Winther, J.R.

(2021) J Am Chem Soc

Released	2019-12-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Cellulomonas fimi
Macromolecule	Exoglucanase/xylanase (protein)
Unique Ligands	1PS, ACT, EDO, ETE, FMT, GOL, PEG

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6RU3 \| pdb_00006ru3	Download File View File

Crystal structure of the FP specific nanobody hFPNb1

Mazarakis, S.M.M., Pedersen, D.V., Laursen, N.S., Andersen, G.R.

(2019) Front Immunol 10: 2007-2007

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.26 Å
Organisms	Lama glama
Macromolecule	hFP1Nb1 (protein)

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6RU5 \| pdb_00006ru5	Download File View File

human complement C3 in complex with the hC3Nb1 nanobody

Jensen, R.K., Andersen, G.R.

(2019) Front Immunol 10: 2007-2007

Released	2019-08-21
Method	X-RAY DIFFRACTION 3.9 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Complement C3 (protein) hC3Nb1 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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6RUR \| pdb_00006rur	Download File View File

Structure of the SCIN stabilized C3bBb convertase bound to properdin

Pedersen, D.V., Gadeberg, T.A.F., Andersen, G.R.

(2019) Front Immunol 10: 2007-2007

Released	2019-08-21
Method	X-RAY DIFFRACTION 6 Å
Organisms	Homo sapiens Staphylococcus aureus
Macromolecule	Unique protein chains: 6
Unique Ligands	MAN, MG
Unique branched monosaccharides	BGC, FUC, NAG

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6RUS \| pdb_00006rus	Download File View File

Structure of a functional properdin monomer

Pedersen, D.V., Andersen, G.R.

(2019) Front Immunol 10: 2007-2007

Released	2019-08-21
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Properdin (protein)
Unique Ligands	MAN, SO4
Unique branched monosaccharides	BGC, FUC, NAG

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6RUV \| pdb_00006ruv	Download File View File

Structure of the SCIN stabilized C3bBb convertase bound to Properdin and a the non-inhibitory nanobody hFPNb1

Pedersen, D.V., Andersen, G.R.

(2019) Front Immunol 10: 2007-2007

Released	2019-08-21
Method	X-RAY DIFFRACTION 6.15 Å
Organisms	Homo sapiens Lama glama Staphylococcus aureus
Macromolecule	Unique protein chains: 7
Unique Ligands	MAN, MG
Unique branched monosaccharides	BGC, FUC, NAG

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6RV6 \| pdb_00006rv6	Download File View File

Structure of properdin lacking TSR3 based on anomalous data

Pedersen, D.V., Andersen, G.R.

(2019) Front Immunol 10: 2007-2007

Released	2019-08-21
Method	X-RAY DIFFRACTION 3.507 Å
Organisms	Homo sapiens
Macromolecule	Properdin (protein)
Unique Ligands	MAN
Unique branched monosaccharides	BGC, FUC, NAG

1 to 25 of 62 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1XQQ | pdb_00001xqq

2AAO | pdb_00002aao

2N7I | pdb_00002n7i

5J7D | pdb_00005j7d

5K9V | pdb_00005k9v

5K9W | pdb_00005k9w

5KA0 | pdb_00005ka0

5KA1 | pdb_00005ka1

5KA2 | pdb_00005ka2

5KA3 | pdb_00005ka3

5KA4 | pdb_00005ka4

5KA7 | pdb_00005ka7

5KA8 | pdb_00005ka8

5KA9 | pdb_00005ka9

5KAA | pdb_00005kaa

5KAB | pdb_00005kab

5KAC | pdb_00005kac

5KAD | pdb_00005kad

6QFS | pdb_00006qfs

6RU3 | pdb_00006ru3

6RU5 | pdb_00006ru5

6RUR | pdb_00006rur

6RUS | pdb_00006rus

6RUV | pdb_00006ruv

6RV6 | pdb_00006rv6