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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Luchetti, T."

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Search Summary

This query matches 77 Structures.

Refinements

Structure Determination Methodology

experimental (77)

Scientific Name of Source Organism

	Pyrococcus horikoshii OT3 (37)
	Homo sapiens (8)
	Thermus thermophilus HB8 (8)
	Aquifex aeolicus VF5 (3)
	Sus scrofa (3)
	Thermus thermophilus (3)
	Aeropyrum pernix (2)
	Methanocaldococcus jannaschii DSM 2661 (2)
	Plasmodium falciparum 3D7 (2)
	Pyrococcus horikoshii (2)

More...

Taxonomy

	Archaea (46)
	Bacteria (18)
	Eukaryota (13)

Experimental Method

	X-RAY DIFFRACTION (74)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

Protein (77)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (43)
	2.0 - 2.5 (24)
	2.5 - 3.0 (3)
	3.0 - 3.5 (4)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (7)
	2005 - 2009 (59)
	2010 - 2014 (1)
	2020 - 2024 (9)

Enzyme Classification Name

	Hydrolases (8)
	Transferases (37)
	Isomerases (7)
	Oxidoreductases (7)
	Lyases (4)

Symmetry Type

	Cyclic (59)
	Asymmetric (10)
	Dihedral (10)

SCOP Classification

	Alpha and beta proteins (a/b) (50)
	Alpha and beta proteins (a+b) (12)
	All alpha proteins (4)
	Artifacts (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 77 Structures

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1AN9 \| pdb_00001an9	Download File View File

D-AMINO ACID OXIDASE COMPLEX WITH O-AMINOBENZOATE

Miura, R., Setoyama, C., Nishina, Y., Shiga, K., Mizutani, H., Miyahara, I., Hirotsu, K.

(1997) J Biochem 122: 825-833

Released	1997-11-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Sus scrofa
Macromolecule	D-AMINO ACID OXIDASE (protein)
Unique Ligands	BE2, FAD

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1ET0 \| pdb_00001et0	Download File View File

CRYSTAL STRUCTURE OF AMINODEOXYCHORISMATE LYASE FROM ESCHERICHIA COLI

Nakai, T., Mizutani, H., Miyahara, I., Hirotsu, K., Takeda, S., Jhee, K.H., Yoshimura, T., Esaki, N.

(2000) J Biochem 128: 29-38

Released	2000-07-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	4-AMINO-4-DEOXYCHORISMATE LYASE (protein)
Unique Ligands	PLP

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1EVI \| pdb_00001evi	Download File View File

THREE-DIMENSIONAL STRUCTURE OF THE PURPLE INTERMEDIATE OF PORCINE KIDNEY D-AMINO ACID OXIDASE

Mizutani, H., Miyahara, I., Hirotsu, K., Nishina, Y., Shiga, K., Setoyama, C., Miura, R.

(2000) J Biochem 128: 73-81

Released	2000-10-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Sus scrofa
Macromolecule	D-AMINO ACID OXIDASE (protein)
Unique Ligands	2PC, FAD

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1V6S \| pdb_00001v6s	Download File View File

Crystal Structure of Phosphoglycerate Kinase from Thermus thermophilus HB8

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2003-12-23
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermus thermophilus
Macromolecule	Phosphoglycerate kinase (protein)
Unique Ligands	GOL, NA

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1V6T \| pdb_00001v6t	Download File View File

Crystal Structure of Lactam Utilization Protein from Pyrococcus horikoshii Ot3

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-12-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Hypothetical UPF0271 protein PH0986 (protein)

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1V8C \| pdb_00001v8c	Download File View File

Crystal Structure of MoaD related protein from Thermus thermophilus HB8

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-01-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Thermus thermophilus
Macromolecule	MoaD related protein (protein)
Unique Ligands	CL, EDO

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1VBI \| pdb_00001vbi	Download File View File

Crystal structure of type 2 malate/lactate dehydrogenase from thermus thermophilus HB8

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-04-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus
Macromolecule	Type 2 malate/lactate dehydrogenase (protein)
Unique Ligands	EDO, NAD, SO4

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1VDK \| pdb_00001vdk	Download File View File

Crystal structure of fumarase from thermus thermophilus HB8

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-04-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Fumarate hydratase class II (protein)

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1VE9 \| pdb_00001ve9	Download File View File

Porcine kidney D-amino acid oxidase

Mizutani, H., Miyahara, I., Hirotsu, K., Nishina, Y., Shiga, K., Setoyama, C., Miura, R.

(1996) J Biochem 120: 14-17

Released	2004-04-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Sus scrofa
Macromolecule	D-amino acid oxidase (protein)
Unique Ligands	BEZ, FAD

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1WY1 \| pdb_00001wy1	Download File View File

Crystal Structure of the PH0671 protein from Pyrococcus horikoshii OT3

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-02-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	hypothetical protein PH0671 (protein)
Unique Ligands	MG

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1WY2 \| pdb_00001wy2	Download File View File

Crystal Structure of the Prolidase from Pyrococcus horikoshii OT3

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-02-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Xaa-Pro dipeptidase (protein)
Unique Ligands	CAC, GOL, MG, ZN

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1WZN \| pdb_00001wzn	Download File View File

Crystal Structure of the SAM-dependent methyltransferase from Pyrococcus horikoshii OT3

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-03-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	SAM-dependent methyltransferase (protein)
Unique Ligands	MG, SAH, SO4

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1WZO \| pdb_00001wzo	Download File View File

Crystal Structure of the HpcE from Thermus Thermophilus HB8

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-02-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus HB8
Macromolecule	HpcE (protein)
Unique Ligands	GOL, NA, SO4

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1X0A \| pdb_00001x0a	Download File View File

Crystal Structure of type II malate/lactate dehydrogenase from thermus thermophilus HB8

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-03-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	malate/L-lactate dehydrogenase family protein (protein)
Unique Ligands	FMT, NA

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1X3L \| pdb_00001x3l	Download File View File

Crystal structure of the PH0495 protein from pyrococccus horikoshii OT3

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-05-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	hypothetical protein PH0495 (protein)
Unique Ligands	EDO, SO4

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1X3O \| pdb_00001x3o	Download File View File

Crystal structure of the acyl carrier protein from thermus thermophilus HB8

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-05-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermus thermophilus HB8
Macromolecule	acyl carrier protein (protein)

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2CUN \| pdb_00002cun	Download File View File

Crystal structure of Phosphoglycerate Kinase from Pyrococcus horikoshii OT3

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Phosphoglycerate kinase (protein)
Unique Ligands	3PG, CL, GOL, MPD

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2D4E \| pdb_00002d4e	Download File View File

Crystal Structure of the HpcC from Thermus Thermophilus HB8

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermus thermophilus HB8
Macromolecule	5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (protein)
Unique Ligands	GOL, NA, NAD

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2DEC \| pdb_00002dec	Download File View File

Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-08-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	325aa long hypothetical protein (protein)
Unique Ligands	EDO, NA

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2DEK \| pdb_00002dek	Download File View File

Crystal structure of project ID PH0725 from Pyrococcus horikoshii OT3 at 1.65 A resolution

Shimizu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-07-18
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Probable diphthine synthase (protein)
Unique Ligands	NA, SAH

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2DF8 \| pdb_00002df8	Download File View File

Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3 in complex with beta-D-Fructopyranose-1-phosphate

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-08-27
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	325aa long hypothetical protein (protein)
Unique Ligands	EDO, F1P

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2DFA \| pdb_00002dfa	Download File View File

Crystal Structure of Lactam Utilization Protein from Thermus thermophilus HB8

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-08-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Hypothetical UPF0271 protein TTHB195 (protein)

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2DFU \| pdb_00002dfu	Download File View File

Crystal structure of the 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase from Thermus Thermophilus HB8

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-09-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	probable 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (protein)

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2DR1 \| pdb_00002dr1	Download File View File

Crystal structure of the PH1308 protein from Pyrococcus horikoshii OT3

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-12-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	386aa long hypothetical serine aminotransferase (protein)
Unique Ligands	CL, NA, PLP

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2DRH \| pdb_00002drh	Download File View File

Crystal structure of the PH0078 protein from Pyrococcus horikoshii OT3

Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-12-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	361aa long hypothetical D-aminopeptidase (protein)
Unique Ligands	CL

1 to 25 of 77 Structures

Page 1 of 4

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1AN9 | pdb_00001an9

1ET0 | pdb_00001et0

1EVI | pdb_00001evi

1V6S | pdb_00001v6s

1V6T | pdb_00001v6t

1V8C | pdb_00001v8c

1VBI | pdb_00001vbi

1VDK | pdb_00001vdk

1VE9 | pdb_00001ve9

1WY1 | pdb_00001wy1

1WY2 | pdb_00001wy2

1WZN | pdb_00001wzn

1WZO | pdb_00001wzo

1X0A | pdb_00001x0a

1X3L | pdb_00001x3l

1X3O | pdb_00001x3o

2CUN | pdb_00002cun

2D4E | pdb_00002d4e

2DEC | pdb_00002dec

2DEK | pdb_00002dek

2DF8 | pdb_00002df8

2DFA | pdb_00002dfa

2DFU | pdb_00002dfu

2DR1 | pdb_00002dr1

2DRH | pdb_00002drh