Download MendeleyCrystal structure of the PH1308 protein from Pyrococcus horikoshii OT3
Mizutani, H., Kunishima, N.To be published.
2DR1 | pdb_00002dr1
Crystal structure of the PH1308 protein from Pyrococcus horikoshii OT3
- PDB DOI: https://doi.org/10.2210/pdb2DR1/pdb
- Classification: TRANSFERASE
- Organism(s): Pyrococcus horikoshii OT3
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2006-06-05 Released: 2006-12-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.202 (Depositor), 0.199 (DCC)
- R-Value Work: 0.180 (Depositor), 0.177 (DCC)
- R-Value Observed: 0.180 (Depositor)
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 386aa long hypothetical serine aminotransferase | 386 | Pyrococcus horikoshii OT3 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for O59033 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore O59033 Go to UniProtKB: O59033 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O59033 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLP Query on PLP | D [auth A], H [auth B] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | ||
| CL Query on CL | C [auth A], G [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| NA Query on NA | E [auth B], F [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.202 (Depositor), 0.199 (DCC)
- R-Value Work: 0.180 (Depositor), 0.177 (DCC)
- R-Value Observed: 0.180 (Depositor)
Space Group: P 65
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 181.238 | α = 90 |
| b = 181.238 | β = 90 |
| c = 47.289 | γ = 120 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2006-12-05 Deposition Author(s): Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2006-12-05
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2025-03-26
Changes: Data collection, Database references, Derived calculations, Structure summary
