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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Ma, Z."

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Search Summary

This query matches 104 Structures.

Refinements

Structure Determination Methodology

experimental (104)

Scientific Name of Source Organism

	Homo sapiens (52)
	synthetic construct (9)
	Lama glama (8)
	Mus musculus (8)
	Staphylococcus aureus (5)
	Vicugna pacos (5)
	Bacillus subtilis subsp. subtilis str. 168 (4)
	Mycobacterium tuberculosis H37Rv (4)
	Rattus norvegicus (4)
	Xenopus laevis (4)

More...

Taxonomy

	Eukaryota (74)
	Bacteria (35)
	other sequences (9)
	Riboviria (3)

Experimental Method

	X-RAY DIFFRACTION (78)
	ELECTRON MICROSCOPY (25)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (104)
	DNA (11)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (20)
	2.0 - 2.5 (26)
	2.5 - 3.0 (25)
	3.0 - 3.5 (20)
	3.5 - 4.0 (7)
	4.0 - 4.5 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (2)
	2005 - 2009 (4)
	2010 - 2014 (15)
	2015 - 2019 (28)
	2020 - 2024 (54)

Enzyme Classification Name

	Hydrolases (24)
	Transferases (12)
	Oxidoreductases (4)
	Ligases (3)
	Lyases (1)

Membrane Protein Annotation

	PDBTM (21)
	mpstruc (14)
	OPM (10)
	MemProtMD (7)

Symmetry Type

	Asymmetric (58)
	Cyclic (46)
	Dihedral (2)

SCOP Classification

	All alpha proteins (13)
	Artifacts (9)
	Alpha and beta proteins (a+b) (4)
	Alpha and beta proteins (a/b) (10)
	Coiled coil proteins (2)
	All beta proteins (2)

AllSelected

1 to 25 of 104 Structures

Page 1 of 5

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1DFJ \| pdb_00001dfj	Download File View File

RIBONUCLEASE INHIBITOR COMPLEXED WITH RIBONUCLEASE A

Kobe, B., Deisenhofer, J.

(1995) Nature 374: 183-186

Released	1997-01-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bos taurus Sus scrofa
Macromolecule	RIBONUCLEASE A (protein) RIBONUCLEASE INHIBITOR (protein)
Unique Ligands	SO4

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1U3C \| pdb_00001u3c	Download File View File

Crystal Structure of the PHR domain of Cryptochrome 1 from Arabidopsis thaliana

Brautigam, C.A., Smith, B.S., Ma, Z., Palnitkar, M., Tomchick, D.R., Machius, M., Deisenhofer, J.

(2004) Proc Natl Acad Sci U S A 101: 12142-12147

Released	2004-08-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Arabidopsis thaliana
Macromolecule	Cryptochrome 1 apoprotein (protein)
Unique Ligands	CL, FAD, HEZ, MG, NDS

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1U3D \| pdb_00001u3d	Download File View File

Crystal Structure of the PHR domain of Cryptochrome 1 from Arabidopsis thaliana with AMPPNP bound

Brautigam, C.A., Smith, B.S., Ma, Z., Palnitkar, M., Tomchick, D.R., Machius, M., Deisenhofer, J.

(2004) Proc Natl Acad Sci U S A 101: 12142-12147

Released	2004-08-24
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Arabidopsis thaliana
Macromolecule	Cryptochrome 1 apoprotein (protein)
Unique Ligands	ANP, CL, FAD, MG, NDS

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1ZG1 \| pdb_00001zg1	Download File View File

NarL complexed to nirB promoter non-palindromic tail-to-tail DNA site

Maris, A.E., Kaczor-Grzeskowiak, M., Ma, Z., Kopka, M.L., Gunsalus, R.P., Dickerson, R.E.

(2005) Biochemistry 44: 14538-14552

Released	2005-11-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Nitrate/nitrite response regulator protein narL (protein) 5'-D(CPGPTPAPCPCPCPAPTPTPAPAPGPGPAPGPTPAPCPG)-3' (nucleic acid) 5'-D(CPGPTPAPCPTPCPCPTPTPAPAPTPGPGPGPTPAPCPG)-3' (nucleic acid)
Unique Ligands	SO4

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1ZG5 \| pdb_00001zg5	Download File View File

NarL complexed to narG-89 promoter palindromic tail-to-tail DNA site

Maris, A.E., Kaczor-Grzeskowiak, M., Ma, Z., Kopka, M.L., Gunsalus, R.P., Dickerson, R.E.

(2005) Biochemistry 44: 14538-14552

Released	2005-11-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Nitrate/nitrite response regulator protein narL (protein) 5'-D(CPGPTPAPCPCPCPCPTPAPTPAPGPGPGPGPTPAPCPG)-3' (nucleic acid)
Unique Ligands	SO4

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2HH7 \| pdb_00002hh7	Download File View File

Crystal Structure of Cu(I) bound CsoR from Mycobacterium tuberculosis.

Sacchettini, J.C., Ramesh, A.

(2007) Nat Chem Biol 3: 60-68

Released	2006-12-05
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Hypothetical protein CsoR (protein)
Unique Ligands	CU1

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3CH6 \| pdb_00003ch6	Download File View File

Crystal Structure of 11beta-HSD1 Double Mutant (L262R, F278E) Complexed with (3,3-dimethylpiperidin-1-yl)(6-(3-fluoro-4-methylphenyl)pyridin-2-yl)methanone

Sheriff, S.

(2008) Bioorg Med Chem Lett 18: 3168-3172

Released	2008-06-10
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	Corticosteroid 11-beta-dehydrogenase isozyme 1 (protein)
Unique Ligands	311, NAP

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3QJ8 \| pdb_00003qj8	Download File View File

Crystal structure of fatty acid amide hydrolase

Min, X., Walker, N.P.C., Wang, Z.

(2011) Proc Natl Acad Sci U S A 108: 7379-7384

Released	2011-04-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Rattus norvegicus
Macromolecule	Fatty-acid amide hydrolase 1 (protein)

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3QJ9 \| pdb_00003qj9	Download File View File

Crystal structure of fatty acid amide hydrolase with small molecule inhibitor

Min, X., Walker, N.P.C., Wang, Z.

(2011) Proc Natl Acad Sci U S A 108: 7379-7384

Released	2011-04-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	Fatty-acid amide hydrolase 1 (protein)
Unique Ligands	EDO, GOL, PGE, QJ9

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3QK5 \| pdb_00003qk5	Download File View File

Crystal structure of fatty acid amide hydrolase with small molecule inhibitor

Min, X., Walker, N.P.C., Wang, Z.

(2011) Bioorg Med Chem Lett 21: 2492-2496

Released	2011-04-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Rattus norvegicus
Macromolecule	Fatty-acid amide hydrolase 1 (protein)
Unique Ligands	EDO, GOL, QK5

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3QKV \| pdb_00003qkv	Download File View File

Crystal structure of fatty acid amide hydrolase with small molecule compound

Min, X., Walker, N.P.C., Wang, Z.

(2011) Proc Natl Acad Sci U S A 108: 7379-7384

Released	2011-04-27
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Rattus norvegicus
Macromolecule	Fatty-acid amide hydrolase 1 (protein)
Unique Ligands	QKV

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3R60 \| pdb_00003r60	Download File View File

Structure of the MntR Fe2+ Complex

Glasfeld, A., Brophy, M.B., Kliegman, J.I., Griner, S.L., Nix, J.C.

(2013) Biochemistry 52: 701-713

Released	2012-04-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus subtilis
Macromolecule	Transcriptional regulator mntR (protein)
Unique Ligands	EPE, FE2, PGO

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3R61 \| pdb_00003r61	Download File View File

Structure of the MntR Co2+ Complex

Glasfeld, A., Brophy, M.B., Kliegman, J.I., Griner, S.L., Nix, J.C.

(2013) Biochemistry 52: 701-713

Released	2012-04-11
Method	X-RAY DIFFRACTION 1.9002 Å
Organisms	Bacillus subtilis
Macromolecule	Transcriptional regulator mntR (protein)
Unique Ligands	CO, EPE

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4GGG \| pdb_00004ggg	Download File View File

Crystal structure of V66A/L68V CzrA in the Zn(II)bound state.

Campanello, G.C., Ma, Z., Grossoehme, N.E., Chakrovorty, D.K., Guerra, A.J., Ye, Y., Dann III, C.E., Merz Jr., K.M., Giedroc, D.P.

(2013) J Mol Biology 425: 1143-1157

Released	2013-02-06
Method	X-RAY DIFFRACTION 1.998 Å
Organisms	Staphylococcus aureus subsp. aureus N315
Macromolecule	Repressor protein (protein)
Unique Ligands	CL, ZN

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4HV5 \| pdb_00004hv5	Download File View File

Structure of the MNTR FE2+ complex with E site metal binding

Glasfeld, A., Brophy, M.B., Kliegman, J.I., Griner, S.L.

(2013) Biochemistry 52: 701-713

Released	2012-11-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Transcriptional regulator MntR (protein)
Unique Ligands	EPE, FE2

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4HV6 \| pdb_00004hv6	Download File View File

Structure of MNTR H77A mutant in apo- and mn-bound forms

Glasfeld, A., Grauer-Gray, K., McGuire, A.

(2013) Biochemistry 52: 701-713

Released	2012-11-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Transcriptional regulator MntR (protein)
Unique Ligands	MG, MN

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4HX4 \| pdb_00004hx4	Download File View File

Structure of MNTR mutant E11K complexed with Mn2+

Glasfeld, A., McGuire, A.

(2013) Biochemistry 52: 701-713

Released	2012-11-21
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Bacillus subtilis
Macromolecule	TRANSCRIPTIONAL REGULATOR MNTR (protein)
Unique Ligands	MN

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4HX7 \| pdb_00004hx7	Download File View File

Structure of MNTR E11K mutant complexed with Cd2+

Glasfeld, A., Cuthbert, B.J.

(2013) Biochemistry 52: 701-713

Released	2012-11-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Transcriptional regulator MntR (protein)
Unique Ligands	CD

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4HX8 \| pdb_00004hx8	Download File View File

Structure of metal-free MNTR mutant E11K

Glasfeld, A., Mcguire, A.

(2013) Biochemistry 52: 701-713

Released	2012-11-21
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Transcriptional regulator MntR (protein)

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4I7H \| pdb_00004i7h	Download File View File

Structural basis for peroxide sensing and gene regulation by PerR from Streptococcus pyogenes

Kumaraswami, M.

(2013) J Biological Chem 288: 18311-18324

Released	2013-05-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus pyogenes MGAS315
Macromolecule	peroxide stress sensing regulator (protein)
Unique Ligands	NI, ZN

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4KW5 \| pdb_00004kw5	Download File View File

M. tuberculosis DprE1 in complex with inhibitor TCA1

Batt, S.M., Besra, G.S., Futterer, K.

(2013) Proc Natl Acad Sci U S A 110: E2510-E2517

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.612 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Oxidoreductase (protein)
Unique Ligands	1W6, FAD, GOL, IMD

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4M1P \| pdb_00004m1p	Download File View File

Crystal structure of the copper-sensing repressor CsoR with Cu(I) from Geobacillus thermodenitrificans NG80-2

Chang, F., Dann III, C.E., Giedroc, D.P.

(2014) J Biological Chem 289: 19204-19217

Released	2014-05-21
Method	X-RAY DIFFRACTION 2.564 Å
Organisms	Geobacillus thermodenitrificans NG80-2
Macromolecule	Copper-sensitive operon repressor (CsoR) (protein)
Unique Ligands	CU1, NA

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4OA7 \| pdb_00004oa7	Download File View File

Crystal structure of Tankyrase1 in complex with IWR1

Zhang, X., He, H.

(2015) Mol Cell Biol 35: 2425-2435

Released	2015-01-07
Method	X-RAY DIFFRACTION 2.301 Å
Organisms	Homo sapiens
Macromolecule	Tankyrase-1 (protein)
Unique Ligands	2XS, ZN

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4OFB \| pdb_00004ofb	Download File View File

Crystal structure of human BRCA1 BRCT in complex with nonphosphopeptide inhibitor

Sun, L., Edwards, R.A., Glover, J.N.M.

(2015) ACS Chem Biol 10: 1198-1208

Released	2015-04-15
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Homo sapiens
Macromolecule	Breast cancer type 1 susceptibility protein (protein) nonphosphopeptide inhibitor (protein)