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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Matsubara, H."

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Search Summary

This query matches 31 Structures.

Refinements

Structure Determination Methodology

experimental (31)

Scientific Name of Source Organism

	Agaricales sp. 'Arthromyces ramosus (13)
	Chryseobacterium proteolyticum (4)
	Homo sapiens (3)
	Bacillus thermoproteolyticus (2)
	unidentified tobacco necrosis virus (2)
	Aphanothece sacrum (1)
	Arthrospira platensis (1)
	Chondrus crispus (1)
	Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE) (1)
	Nitratidesulfovibrio vulgaris (1)

More...

Taxonomy

	Eukaryota (20)
	Bacteria (9)
	Riboviria (3)

Experimental Method

X-RAY DIFFRACTION (31)

Polymer Entity Type

Protein (31)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (5)
	1.5 - 2.0 (14)
	2.0 - 2.5 (7)
	2.5 - 3.0 (1)
	3.0 - 3.5 (2)
	> 4.5 (1)

Release Date

	1980 - 1984 (1)
	1990 - 1994 (4)
	1995 - 1999 (11)
	2000 - 2004 (4)
	2005 - 2009 (4)
	2010 - 2014 (4)
	2015 - 2019 (3)

Enzyme Classification Name

	Oxidoreductases (14)
	Hydrolases (4)

Symmetry Type

	Asymmetric (28)
	Cyclic (1)
	Icosahedral (2)

SCOP Classification

	All alpha proteins (16)
	Alpha and beta proteins (a+b) (7)
	All beta proteins (2)
	Low resolution protein structures (1)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)
	Small proteins (1)

AllSelected

1 to 25 of 31 Structures

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1ARP \| pdb_00001arp	Download File View File

Crystal structure of the fungal peroxidase from Arthromyces ramosus at 1.9 angstroms resolution: structural comparisons with the lignin and cytochrome C peroxidases

Kunishima, N., Fukuyama, K.

(1994) J Mol Biology 235: 331-344

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Penicillium janthinellum
Macromolecule	PEROXIDASE (protein)
Unique Ligands	CA, HEM
Unique branched monosaccharides	NAG

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1ARU \| pdb_00001aru	Download File View File

CRYSTAL STRUCTURES OF CYANIDE-AND TRIIODIDE-BOUND FORMS OF ARTHROMYCES RAMOSUS PEROXIDASE AT DIFFERENT PH VALUES. PERTURBATIONS OF ACTIVE SITE RESIDUES AND THEIR IMPLICATION IN ENZYME CATALYSIS

Fukuyama, K., Kunishima, N., Amada, F.

(1995) J Biological Chem 270: 21884-21892

Released	1996-01-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PEROXIDASE (protein)
Unique Ligands	CA, CYN, HEM
Unique branched monosaccharides	NAG

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1ARV \| pdb_00001arv	Download File View File

CRYSTAL STRUCTURES OF CYANIDE-AND TRIIODIDE-BOUND FORMS OF ARTHROMYCES RAMOSUS PEROXIDASE AT DIFFERENT PH VALUES. PERTURBATIONS OF ACTIVE SITE RESIDUES AND THEIR IMPLICATION IN ENZYME CATALYSIS

Fukuyama, K., Kunishima, N., Amada, F.

(1995) J Biological Chem 270: 21884-21892

Released	1996-01-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PEROXIDASE (protein)
Unique Ligands	CA, CYN, HEM
Unique branched monosaccharides	NAG

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1ARW \| pdb_00001arw	Download File View File

CRYSTAL STRUCTURES OF CYANIDE-AND TRIIODIDE-BOUND FORMS OF ARTHROMYCES RAMOSUS PEROXIDASE AT DIFFERENT PH VALUES. PERTURBATIONS OF ACTIVE SITE RESIDUES AND THEIR IMPLICATION IN ENZYME CATALYSIS

Fukuyama, K., Kunishima, N., Amada, F.

(1995) J Biological Chem 270: 21884-21892

Released	1996-01-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PEROXIDASE (protein)
Unique Ligands	CA, CYN, HEM
Unique branched monosaccharides	NAG

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1ARX \| pdb_00001arx	Download File View File

CRYSTAL STRUCTURES OF CYANIDE-AND TRIIODIDE-BOUND FORMS OF ARTHROMYCES RAMOSUS PEROXIDASE AT DIFFERENT PH VALUES. PERTURBATIONS OF ACTIVE SITE RESIDUES AND THEIR IMPLICATION IN ENZYME CATALYSIS

Fukuyama, K., Kunishima, N., Amada, F.

(1995) J Biological Chem 270: 21884-21892

Released	1996-01-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PEROXIDASE (protein)
Unique Ligands	CA, HEM, IOD, K
Unique branched monosaccharides	NAG

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1ARY \| pdb_00001ary	Download File View File

CRYSTAL STRUCTURES OF CYANIDE-AND TRIIODIDE-BOUND FORMS OF ARTHROMYCES RAMOSUS PEROXIDASE AT DIFFERENT PH VALUES. PERTURBATIONS OF ACTIVE SITE RESIDUES AND THEIR IMPLICATION IN ENZYME CATALYSIS

Fukuyama, K., Kunishima, N., Amada, F.

(1995) J Biological Chem 270: 21884-21892

Released	1996-01-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PEROXIDASE (protein)
Unique Ligands	CA, HEM, IOD, K
Unique branched monosaccharides	NAG

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1C8I \| pdb_00001c8i	Download File View File

BINDING MODE OF HYDROXYLAMINE TO ARTHROMYCES RAMOSUS PEROXIDASE

Wariishi, H., Nonaka, D., Johjima, T., Nakamura, N., Naruta, Y., Kubo, K., Fukuyama, K.

(2000) J Biological Chem 275: 32919-32924

Released	2001-01-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PROTEIN (PEROXIDASE) (protein)
Unique Ligands	BMA, CA, HEM, HOA
Unique branched monosaccharides	NAG

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1C8N \| pdb_00001c8n	Download File View File

TOBACCO NECROSIS VIRUS

Oda, Y., Fukuyama, K.

(2000) J Mol Biology 300: 153-169

Released	2000-08-30
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	unidentified tobacco necrosis virus
Macromolecule	COAT PROTEIN (protein)
Unique Ligands	CA

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1CK6 \| pdb_00001ck6	Download File View File

BINDING MODE OF SALICYLHYDROXAMIC ACID TO ARTHROMYCES RAMOSUS PEROXIDASE

Fukuyama, K., Itakura, H.

(1999) Biochemistry 38: 12558-12568

Released	1999-12-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PROTEIN (PEROXIDASE) (protein)
Unique Ligands	BMA, CA, HEM, SHA
Unique branched monosaccharides	NAG

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1FXI \| pdb_00001fxi	Download File View File

STRUCTURE OF THE [2FE-2S] FERREDOXIN I FROM THE BLUE-GREEN ALGA APHANOTHECE SACRUM AT 2.2 ANGSTROMS RESOLUTION

Tsukihara, T.

(1990) J Mol Biology 216: 399-410

Released	1991-10-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Aphanothece sacrum
Macromolecule	FERREDOXIN I (protein)
Unique Ligands	FES

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1GZA \| pdb_00001gza	Download File View File

PEROXIDASE

Fukuyama, K., Itakura, H.

(1997) J Biological Chem 272: 5752-5756

Released	1997-03-12
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PEROXIDASE (protein)
Unique Ligands	CA, HEM, IOD
Unique branched monosaccharides	NAG

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1GZB \| pdb_00001gzb	Download File View File

PEROXIDASE

Fukuyama, K., Kunishima, N., Amada, F.

(1996) FEBS Lett 378: 291-294

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PEROXIDASE (protein)
Unique Ligands	CA, HEM
Unique branched monosaccharides	NAG

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1HSR \| pdb_00001hsr	Download File View File

BINDING MODE OF BENZHYDROXAMIC ACID TO ARTHROMYCES RAMOSUS PEROXIDASE

Fukuyama, K., Itakura, H.

(1997) FEBS Lett 412: 107-110

Released	1998-07-01
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	PEROXIDASE (protein)
Unique Ligands	BHO, CA, HEM
Unique branched monosaccharides	NAG

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1HSS \| pdb_00001hss	Download File View File

0.19 ALPHA-AMYLASE INHIBITOR FROM WHEAT

Oda, Y., Fukuyama, K.

(1997) Biochemistry 36: 13503-13511

Released	1998-07-01
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Triticum aestivum
Macromolecule	0.19 ALPHA-AMYLASE INHIBITOR (protein)

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1IQZ \| pdb_00001iqz	Download File View File

OXIDIZED [4Fe-4S] FERREDOXIN FROM BACILLUS THERMOPROTEOLYTICUS (FORM I)

Fukuyama, K., Okada, T., Kakuta, Y., Takahashi, Y.

(2002) J Mol Biology 315: 1155-1166

Released	2002-02-13
Method	X-RAY DIFFRACTION 0.92 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	Ferredoxin (protein)
Unique Ligands	SF4, SO4

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1IR0 \| pdb_00001ir0	Download File View File

OXIDIZED [4Fe-4S] FERREDOXIN FROM BACILLUS THERMOPROTEOLYTICUS (FORM II)

Fukuyama, K., Okada, T., Kakuta, Y., Takahashi, Y.

(2002) J Mol Biology 315: 1155-1166

Released	2002-02-13
Method	X-RAY DIFFRACTION 1 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	Ferredoxin (protein)
Unique Ligands	SF4, SO4

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1TNV \| pdb_00001tnv	Download File View File

CRYSTAL STRUCTURAL ANALYSIS OF TOBACCO NECROSIS VIRUS (TNV) AT 5 ANGSTROMS RESOLUTION

Tsukihara, T.

(1994) Acta Crystallogr D Biol Crystallogr 50: 878-883

Released	1994-12-20
Method	X-RAY DIFFRACTION 5 Å
Organisms	unidentified tobacco necrosis virus
Macromolecule	TOBACCO NECROSIS VIRUS (SUBUNIT VP1) (protein) TOBACCO NECROSIS VIRUS (SUBUNIT VP3) (protein)

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2CDV \| pdb_00002cdv	Download File View File

REFINED STRUCTURE OF CYTOCHROME C3 AT 1.8 ANGSTROMS RESOLUTION

Higuchi, Y., Kusunoki, M., Matsuura, Y., Yasuoka, N., Kakudo, M.

(1984) J Mol Biology 172: 109-139

Released	1984-02-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Nitratidesulfovibrio vulgaris
Macromolecule	CYTOCHROME C3 (protein)
Unique Ligands	HEC

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2E39 \| pdb_00002e39	Download File View File

Crystal structure of the CN-bound form of Arthromyces ramosus peroxidase at 1.3 Angstroms resolution

Fukuyama, K., Okada, T.

(2007) Acta Crystallogr D Biol Crystallogr 63: 472-477

Released	2007-03-20
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	Peroxidase (protein)
Unique Ligands	CA, CYN, HEM, MAN
Unique branched monosaccharides	NAG

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2E3A \| pdb_00002e3a	Download File View File

Crystal structure of the NO-bound form of Arthromyces ramosus peroxidase at 1.3 Angstroms resolution

Fukuyama, K., Okada, T.

(2007) Acta Crystallogr D Biol Crystallogr 63: 472-477

Released	2007-03-20
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	Peroxidase (protein)
Unique Ligands	CA, HEM, MAN, NO
Unique branched monosaccharides	NAG

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2E3B \| pdb_00002e3b	Download File View File

Crystal structure of the HA-bound form of Arthromyces ramosus peroxidase at 1.3 Angstroms resolution

Fukuyama, K., Okada, T.

(2007) Acta Crystallogr D Biol Crystallogr 63: 472-477

Released	2007-03-20
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Agaricales sp. 'Arthromyces ramosus
Macromolecule	Peroxidase (protein)
Unique Ligands	CA, HEM, HOA, MAN
Unique branched monosaccharides	NAG

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2FCR \| pdb_00002fcr	Download File View File

CRYSTAL STRUCTURE OF OXIDIZED FLAVODOXIN FROM A RED ALGA CHONDRUS CRISPUS REFINED AT 1.8 ANGSTROMS RESOLUTION: DESCRIPTION OF THE FLAVIN MONONUCLEOTIDE BINDING SITE

Fukuyama, K.

(1992) J Mol Biology 225: 775-789

Released	1992-03-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Chondrus crispus
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

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2ZK9 \| pdb_00002zk9	Download File View File

Crystal Structure of Protein-glutaminase

Hashizume, R.

(2011) J Biological Chem 286: 38691-38702

Released	2009-03-17
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Chryseobacterium proteolyticum
Macromolecule	Protein-glutaminase (protein)
Unique Ligands	GOL, NA