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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Mori, T."

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Search Summary

This query matches 254 Structures.

Refinements

Structure Determination Methodology

experimental (254)

Scientific Name of Source Organism

	Mus musculus (27)
	Synechococcus elongatus PCC 7942 = FACHB-805 (22)
	Physeter macrocephalus (11)
	Cannabis sativa (9)
	Fischerella ambigua UTEX 1903 (9)
	Penicillium brasilianum (9)
	Homo sapiens (8)
	Nostoc ellipsosporum (7)
	Aspergillus sp. (6)
	Streptomyces blastmyceticus (6)

More...

Taxonomy

	Bacteria (127)
	Eukaryota (125)
	Archaea (2)
	other sequences (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (247)
	ELECTRON MICROSCOPY (6)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (254)
	DNA (2)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (20)
	1.5 - 2.0 (70)
	2.0 - 2.5 (97)
	2.5 - 3.0 (37)
	3.0 - 3.5 (22)
	3.5 - 4.0 (3)
	4.0 - 4.5 (1)
	> 4.5 (2)

Release Date

	2000 - 2004 (7)
	2005 - 2009 (20)
	2010 - 2014 (23)
	2015 - 2019 (106)
	2020 - 2024 (96)
	2025 - 2029 (2)

Enzyme Classification Name

	Transferases (39)
	Oxidoreductases (33)
	Hydrolases (33)
	Lyases (20)
	Isomerases (7)
	Ligases (1)

Membrane Protein Annotation

	PDBTM (22)
	OPM (15)
	mpstruc (17)
	MemProtMD (12)

Symmetry Type

	Asymmetric (119)
	Cyclic (128)
	Dihedral (10)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (19)
	All beta proteins (18)
	All alpha proteins (22)
	Artifacts (17)
	Alpha and beta proteins (a+b) (11)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 254 Structures

Page 1 of 11

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1EHL \| pdb_00001ehl	Download File View File

64M-2 ANTIBODY FAB COMPLEXED WITH D(5HT)(6-4)T

Yokoyama, H., Mizutani, R., Satow, Y., Komatsu, Y., Ohtsuka, E., Nikaido, O.

(2000) J Mol Biology 299: 711-723

Released	2001-02-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	ANTI-(6-4) PHOTOPRODUCT ANTIBODY 64M-2 FAB (HEAVY CHAIN) (protein) ANTI-(6-4) PHOTOPRODUCT ANTIBODY 64M-2 FAB (LIGHT CHAIN) (protein) 5'-(D(5HT)P*(6-4)T)-3' (nucleic acid)

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1FXZ \| pdb_00001fxz	Download File View File

CRYSTAL STRUCTURE OF SOYBEAN PROGLYCININ A1AB1B HOMOTRIMER

Adachi, M., Takenaka, Y., Gidamis, A.B., Mikami, B., Utsumi, S.

(2001) J Mol Biology 305: 291-305

Released	2001-10-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Glycine max
Macromolecule	GLYCININ G1 (protein)

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1KEG \| pdb_00001keg	Download File View File

Antibody 64M-2 Fab complexed with dTT(6-4)TT

Yokoyama, H., Mizutani, R., Satow, Y., Sato, K., Komatsu, Y., Ohtsuka, E., Nikaido, O.

(2012) Acta Crystallogr D Biol Crystallogr 68: 232-238

Released	2002-11-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	Anti-(6-4) photoproduct antibody 64M-2 Fab (heavy chain) (protein) Anti-(6-4) photoproduct antibody 64M-2 Fab (light chain) (protein) 5'-D(TP(64T)PTPT)-3' (nucleic acid)
Unique Ligands	NI

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1L5B \| pdb_00001l5b	Download File View File

DOMAIN-SWAPPED CYANOVIRIN-N DIMER

Barrientos, L.G., Louis, J.M., Botos, I., Mori, T., Han, Z., O'Keefe, B.R., Boyd, M.R., Wlodawer, A., Gronenborn, A.M.

(2002) Structure 10: 673-686

Released	2002-05-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Nostoc ellipsosporum
Macromolecule	cyanovirin-N (protein)
Unique Ligands	NA, NHE

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1L5E \| pdb_00001l5e	Download File View File

The domain-swapped dimer of CV-N in solution

Barrientos, L.G., Louis, J.M., Botos, I., Mori, T., Han, Z., O'Keefe, B.R., Boyd, M.R., Wlodawer, A., Gronenborn, A.M.

(2002) Structure 10: 673-686

Released	2002-06-05
Method	SOLUTION NMR
Organisms	Nostoc ellipsosporum
Macromolecule	Cyanovirin-N (protein)

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1LOM \| pdb_00001lom	Download File View File

CYANOVIRIN-N DOUBLE MUTANT P51S S52P

Botos, I., Mori, T., Cartner, L.K., Boyd, M.R., Wlodawer, A.

(2002) Biochem Biophys Res Commun 294: 184-190

Released	2002-06-26
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Nostoc ellipsosporum
Macromolecule	Cyanovirin-N (protein)
Unique Ligands	CA, SO4

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1TF7 \| pdb_00001tf7	Download File View File

Crystal Structure of Circadian Clock Protein KaiC

Pattanayek, R., Wang, J., Mori, T., Xu, Y., Johnson, C.H., Egli, M.

(2004) Mol Cell 15: 375-388

Released	2004-08-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Synechococcus sp.
Macromolecule	KaiC (protein)
Unique Ligands	ATP

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1U9I \| pdb_00001u9i	Download File View File

Crystal Structure of Circadian Clock Protein KaiC with Phosphorylation Sites

Xu, Y., Mori, T., Pattanayek, R., Pattanayek, S., Egli, M., Johnson, C.H.

(2004) Proc Natl Acad Sci U S A 101: 13933-13938

Released	2005-04-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	KaiC (protein)
Unique Ligands	ATP, MG

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2DSN \| pdb_00002dsn	Download File View File

Crystal structure of T1 lipase

Matsumura, H., Kai, Y.

(2007) Proteins 70: 592-598

Released	2007-07-17
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Geobacillus zalihae
Macromolecule	Thermostable lipase (protein)
Unique Ligands	CA, CL, NA, ZN

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2GBL \| pdb_00002gbl	Download File View File

Crystal Structure of Full Length Circadian Clock Protein KaiC with Phosphorylation Sites

Pattanayek, R., Williams, D.R., Pattanayek, S., Xu, Y., Mori, T., Johnson, C.H., Stewart, P.L., Egli, M.

(2006) EMBO J 25: 2017-2028

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Circadian clock protein kinase kaiC (protein)
Unique Ligands	ATP, MG

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2GTY \| pdb_00002gty	Download File View File

Crystal structure of unliganded griffithsin

Ziolkowska, N.E., Wlodawer, A.

(2006) Structure 14: 1127-1135

Released	2006-08-01
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Griffithsia
Macromolecule	Griffithsin (protein)
Unique Ligands	EDO, SO4

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2GUC \| pdb_00002guc	Download File View File

Crystal structure of a complex of griffithsin with mannose at 1.78 A resolution.

Ziolkowska, N.E., Wlodawer, A.

(2006) Structure 14: 1127-1135

Released	2006-08-01
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Griffithsia
Macromolecule	griffithsin (protein)
Unique Ligands	EDO, MAN, SO4

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2GUD \| pdb_00002gud	Download File View File

Crystal structure of a complex of griffithsin with mannose at 0.94 A resolution

Ziolkowska, N.E., Wlodawer, A.

(2006) Structure 14: 1127-1135

Released	2006-08-01
Method	X-RAY DIFFRACTION 0.94 Å
Organisms	Griffithsia
Macromolecule	griffithsin (protein)
Unique Ligands	BMA, EDO, MAN, SO4

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2GUE \| pdb_00002gue	Download File View File

Crystal structure of a complex of griffithsin with N-acetylglucosamine

Ziolkowska, N.E., Wlodawer, A.

(2006) Structure 14: 1127-1135

Released	2006-08-01
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Griffithsia
Macromolecule	griffithsin (protein)
Unique Ligands	EDO, NAG, SO4

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2GUX \| pdb_00002gux	Download File View File

Selenomethionine derivative of griffithsin

Ziolkowska, N.E., Wlodawer, A.

(2006) Structure 14: 1127-1135

Released	2006-08-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Griffithsia
Macromolecule	griffithsin (protein)
Unique Ligands	SO4

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2PYS \| pdb_00002pys	Download File View File

Crystal Structure of a Five Site Mutated Cyanovirin-N with a Mannose Dimer Bound at 1.8 A Resolution

Fromme, R., Katilene, Z., Fromme, P., Ghirlanda, G.

(2007) Biochemistry 46: 9199-9207

Released	2007-07-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Nostoc ellipsosporum
Macromolecule	Cyanovirin-N (protein)
Unique branched monosaccharides	MAN

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2QKE \| pdb_00002qke	Download File View File

Wild Type Crystal Structure of Full Length Circadian Clock Protein KaiB from Thermosynechococcus elongatus BP-1

Pattanayek, R., Egli, M., Pattanayek, S.

(2008) EMBO J 27: 1767-1778

Released	2008-06-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Synechococcus elongatus
Macromolecule	Circadian clock protein kaiB (protein)

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2RDK \| pdb_00002rdk	Download File View File

Five site mutated Cyanovirin-N with Mannose dimer bound

Fromme, R., Katiliene, Z., Fromme, P., Ghirlanda, G.

(2008) Protein Sci 17: 939-944

Released	2008-05-06
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Nostoc ellipsosporum
Macromolecule	Cyanovirin-N (protein)
Unique branched monosaccharides	MAN

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2Z21 \| pdb_00002z21	Download File View File

Crystal Structure of a five site mutated Cyanovirin-N

Fromme, R., Katilene, Z., Fromme, P., Ghirlanda, G.

(2007) Biochemistry 46: 9199-9207

Released	2007-07-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Nostoc ellipsosporum
Macromolecule	Cyanovirin-N (protein)

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2Z5G \| pdb_00002z5g	Download File View File

Crystal structure of T1 lipase F16L mutant

Matsumura, H., Yamamoto, T., Inoue, T., Kai, Y.

(2007) Proteins 70: 592-598

Released	2007-10-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Geobacillus zalihae
Macromolecule	Thermostable lipase (protein)
Unique Ligands	CA, CL, ZN

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2ZJS \| pdb_00002zjs	Download File View File

Crystal Structure of SecYE translocon from Thermus thermophilus with a Fab fragment

Tsukazaki, T., Mori, H., Fukai, S., Ishitani, R., Perederina, A., Vassylyev, D.G., Ito, K., Nureki, O.

(2008) Nature 455: 988-991

Released	2008-10-14
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Mus musculus Thermus thermophilus
Macromolecule	Fab56 (heavy chain) (protein) Fab56 (light chain) (protein) Preprotein translocase SecE subunit (protein) Preprotein translocase SecY subunit (protein)
Unique Ligands	ZN

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2ZPY \| pdb_00002zpy	Download File View File

Crystal structure of the mouse radxin FERM domain complexed with the mouse CD44 cytoplasmic peptide

Mori, T., Kitano, K., Terawaki, S., Maesaki, R., Fukami, Y., Hakoshima, T.

(2008) J Biological Chem 283: 29602-29612

Released	2008-08-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	CD44 antigen (protein) Radixin (protein)

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2ZQP \| pdb_00002zqp	Download File View File

Crystal Structure of SecYE translocon from Thermus thermophilus

Tsukazaki, T., Nureki, O.

(2008) Nature 455: 988-991

Released	2008-10-14
Method	X-RAY DIFFRACTION 6 Å
Organisms	Thermus thermophilus
Macromolecule	Preprotein translocase SecE subunit (protein) Preprotein translocase SecY subunit (protein)