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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Padmanabhan, K."

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Search Summary

This query matches 54 Structures.

Refinements

Structure Determination Methodology

experimental (54)

Scientific Name of Source Organism

	Homo sapiens (42)
	Bos taurus (9)
	Glycine max (2)
	synthetic construct (2)
	Ornithodoros moubata (1)
	Rattus norvegicus (1)
	Schistosoma mansoni (1)
	Streptococcus pyogenes (1)
	Sus scrofa (1)

Taxonomy

	Eukaryota (54)
	other sequences (2)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (53)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (54)
	DNA (5)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (13)
	2.0 - 2.5 (14)
	2.5 - 3.0 (18)
	3.0 - 3.5 (7)

Release Date

	1990 - 1994 (9)
	1995 - 1999 (14)
	2000 - 2004 (17)
	2005 - 2009 (6)
	2010 - 2014 (8)

Enzyme Classification Name

	Hydrolases (47)
	Oxidoreductases (2)
	Transferases (2)

Symmetry Type

	Asymmetric (53)
	Cyclic (1)

SCOP Classification

	Small proteins (37)
	All beta proteins (38)
	All alpha proteins (3)
	Alpha and beta proteins (a/b) (2)
	Alpha and beta proteins (a+b) (1)
	Artifacts (2)

AllSelected

1 to 25 of 54 Structures

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1ADZ \| pdb_00001adz	Download File View File

THE SOLUTION STRUCTURE OF THE SECOND KUNITZ DOMAIN OF TISSUE FACTOR PATHWAY INHIBITOR, NMR, 30 STRUCTURES

Burgering, M.J.M., Orbons, L.P.M.

(1997) J Mol Biology 269: 395-407

Released	1998-02-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	TISSUE FACTOR PATHWAY INHIBITOR (protein)

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1BDG \| pdb_00001bdg	Download File View File

HEXOKINASE FROM SCHISTOSOMA MANSONI COMPLEXED WITH GLUCOSE

Mulichak, A.M., Garavito, R.M.

(1998) Nat Struct Biol 5: 555-560

Released	1999-05-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Schistosoma mansoni
Macromolecule	HEXOKINASE (protein)
Unique Ligands	GLC, SO4

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1BG3 \| pdb_00001bg3	Download File View File

RAT BRAIN HEXOKINASE TYPE I COMPLEX WITH GLUCOSE AND INHIBITOR GLUCOSE-6-PHOSPHATE

Mulichak, A.M., Garavito, R.M.

(1998) Nat Struct Biol 5: 555-560

Released	1999-06-08
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Rattus norvegicus
Macromolecule	HEXOKINASE (protein)
Unique Ligands	BGC, CA, G6P

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1D0D \| pdb_00001d0d	Download File View File

CRYSTAL STRUCTURE OF TICK ANTICOAGULANT PROTEIN COMPLEXED WITH BOVINE PANCREATIC TRYPSIN INHIBITOR

St.Charles, R., Padmanabhan, K., Arni, R.V., Padmanabhan, K.P., Tulinsky, A.

(2000) Protein Sci 9: 265-272

Released	2000-09-09
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Bos taurus Ornithodoros moubata
Macromolecule	ANTICOAGULANT PROTEIN (protein) PANCREATIC TRYPSIN INHIBITOR (protein)
Unique Ligands	SO4

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1FAX \| pdb_00001fax	Download File View File

COAGULATION FACTOR XA INHIBITOR COMPLEX

Brandstetter, H., Engh, R.A.

(1996) J Biological Chem 271: 29988-29992

Released	1997-10-29
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	FACTOR XA (protein)
Unique Ligands	CA, DX9

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1HAO \| pdb_00001hao	Download File View File

COMPLEX OF HUMAN ALPHA-THROMBIN WITH A 15MER OLIGONUCLEOTIDE GGTTGGTGTGGTTGG (BASED ON NMR MODEL OF DNA)

Tulinsky, A., Padmanabhan, K.

(1996) Acta Crystallogr D Biol Crystallogr 52: 272-282

Released	1996-04-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-THROMBIN heavy chain (protein) ALPHA-THROMBIN light chain (protein) DNA 5'-D(GPGPTPTPGPGPTPGPTPGPGPTPTPGP*G)-3' (nucleic acid)
Unique Ligands	0G6

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1HAP \| pdb_00001hap	Download File View File

COMPLEX OF HUMAN ALPHA-THROMBIN WITH A 15MER OLIGONUCLEOTIDE GGTTGGTGTGGTTGG (BASED ON X-RAY MODEL OF DNA)

Padmanabhan, K., Tulinsky, A.

(1996) Acta Crystallogr D Biol Crystallogr 52: 272-282

Released	1996-04-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Thrombin heavy chain (protein) Thrombin light chain (protein) 5'-D(GPGPTPTPGPGPTPGPTPGPGPTPTPGP*G)-3' (nucleic acid)
Unique Ligands	0G6

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1HCG \| pdb_00001hcg	Download File View File

STRUCTURE OF HUMAN DES(1-45) FACTOR XA AT 2.2 ANGSTROMS RESOLUTION

Tulinsky, A., Padmanabhan, K.

(1993) J Mol Biology 232: 947-966

Released	1995-05-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	BLOOD COAGULATION FACTOR XA (protein)

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1HUT \| pdb_00001hut	Download File View File

THE STRUCTURE OF ALPHA-THROMBIN INHIBITED BY A 15-MER SINGLE-STRANDED DNA APTAMER

Padmanabhan, K., Padmanabhan, K.P., Ferrara, J.D., Sadler, J.E., Tulinsky, A.

(1993) J Biological Chem 268: 17651-17654

Released	1994-06-22
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-Thrombin heavy chain (protein) ALPHA-Thrombin light chain (protein) DNA 5'-D(GPGPTPTPGPGPTPGPTPGPGPTPTPGP*G)-3' (nucleic acid)
Unique Ligands	0G7

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1I5K \| pdb_00001i5k	Download File View File

STRUCTURE AND BINDING DETERMINANTS OF THE RECOMBINANT KRINGLE-2 DOMAIN OF HUMAN PLASMINOGEN TO AN INTERNAL PEPTIDE FROM A GROUP A STREPTOCOCCAL SURFACE PROTEIN

Rios-Steiner, J.L., Schenone, M., Mochalkin, I., Tulinsky, A., Castellino, F.J.

(2001) J Mol Biology 308: 705-719

Released	2001-08-01
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Streptococcus pyogenes
Macromolecule	M PROTEIN (protein) PLASMINOGEN (protein)

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1IOE \| pdb_00001ioe	Download File View File

Human coagulation factor Xa in complex with M55532

Shiromizu, I., Matsusue, T.

To be published

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	COAGULATION FACTOR XA (protein)
Unique Ligands	CA, XMA

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1IQE \| pdb_00001iqe	Download File View File

Human coagulation factor Xa in complex with M55590

Shiromizu, I., Matsusue, T.

To be published

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	coagulation Factor Xa (protein)
Unique Ligands	CA, XMB

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1IQF \| pdb_00001iqf	Download File View File

Human coagulation factor Xa in complex with M55165

Shiromizu, I., Matsusue, T.

To be published

Released	2003-09-23
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	coagulation Factor Xa (protein)
Unique Ligands	CA, XMD

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1IQG \| pdb_00001iqg	Download File View File

Human coagulation factor Xa in complex with M55159

Shiromizu, I., Matsusue, T.

To be published

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	coagulation Factor Xa (protein)
Unique Ligands	CA, XME

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1IQH \| pdb_00001iqh	Download File View File

Human coagulation factor Xa in complex with M55143

Shiromizu, I., Matsusue, T.

To be published

Released	2003-09-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	coagulation Factor Xa (protein)
Unique Ligands	CA, XMF

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1IQI \| pdb_00001iqi	Download File View File

Human coagulation factor Xa in complex with M55125

Shiromizu, I., Matsusue, T.

To be published

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	coagulation Factor Xa (protein)
Unique Ligands	CA, XMG

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1IQJ \| pdb_00001iqj	Download File View File

Human coagulation factor Xa in complex with M55124

Shiromizu, I., Matsusue, T.

To be published

Released	2003-09-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	coagulation Factor Xa (protein)
Unique Ligands	CA, XMH

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1IQK \| pdb_00001iqk	Download File View File

Human coagulation factor Xa in complex with M55113

Shiromizu, I., Matsusue, T.

To be published

Released	2003-09-23
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	coagulation Factor Xa (protein)
Unique Ligands	CA, XMI

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1IQL \| pdb_00001iql	Download File View File

Human coagulation factor Xa in complex with M54476

Shiromizu, I., Matsusue, T.

To be published

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	coagulation Factor Xa (protein)
Unique Ligands	CA, XMJ

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1IQM \| pdb_00001iqm	Download File View File

Human coagulation factor Xa in complex with M54471

Shiromizu, I., Matsusue, T.

To be published

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	coagulation Factor Xa (protein)
Unique Ligands	CA, XMK

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1IQN \| pdb_00001iqn	Download File View File

Human coagulation factor Xa in complex with M55192

Shiromizu, I., Matsusue, T.

To be published

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	coagulation Factor Xa (protein)
Unique Ligands	CA, XMC

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1MTS \| pdb_00001mts	Download File View File

FACTOR XA SPECIFIC INHIBITOR IN COMPLEX WITH BOVINE TRYPSIN

Stubbs, M.T.

(1995) FEBS Lett 375: 103-107

Released	1997-08-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	TRYPSIN (protein)
Unique Ligands	BX3, CA

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1MTU \| pdb_00001mtu	Download File View File

FACTOR XA SPECIFIC INHIBITOR IN COMPLEX WITH BOVINE TRYPSIN

Stubbs, M.T.

(1995) FEBS Lett 375: 103-107

Released	1997-11-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	TRYPSIN (protein)
Unique Ligands	BX3, CA

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1MTV \| pdb_00001mtv	Download File View File

FACTOR XA SPECIFIC INHIBITOR IN COMPLEX WITH BOVINE TRYPSIN

Stubbs, M.T.

(1995) FEBS Lett 375: 103-107

Released	1997-11-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	TRYPSIN (protein)
Unique Ligands	BX3, CA

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1MTW \| pdb_00001mtw	Download File View File

FACTOR XA SPECIFIC INHIBITOR IN COMPLEX WITH BOVINE TRYPSIN

Stubbs, M.T.

(1995) FEBS Lett 375: 103-107

Released	1997-11-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	TRYPSIN (protein)
Unique Ligands	CA, DX9

1 to 25 of 54 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1ADZ | pdb_00001adz

1BDG | pdb_00001bdg

1BG3 | pdb_00001bg3

1D0D | pdb_00001d0d

1FAX | pdb_00001fax

1HAO | pdb_00001hao

1HAP | pdb_00001hap

1HCG | pdb_00001hcg

1HUT | pdb_00001hut

1I5K | pdb_00001i5k

1IOE | pdb_00001ioe

1IQE | pdb_00001iqe

1IQF | pdb_00001iqf

1IQG | pdb_00001iqg

1IQH | pdb_00001iqh

1IQI | pdb_00001iqi

1IQJ | pdb_00001iqj

1IQK | pdb_00001iqk

1IQL | pdb_00001iql

1IQM | pdb_00001iqm

1IQN | pdb_00001iqn

1MTS | pdb_00001mts

1MTU | pdb_00001mtu

1MTV | pdb_00001mtv

1MTW | pdb_00001mtw