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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Sato, C."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Gallus gallus (5)
	Mus musculus (4)
	Sus scrofa (4)
	Haemophilus influenzae Rd KW20 (2)
	Archaeoglobus fulgidus DSM 4304 (1)
	Homo sapiens (1)
	Methanocaldococcus jannaschii DSM 2661 (1)
	Pyrococcus furiosus COM1 (1)
	Pyrococcus furiosus DSM 3638 (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (13)
	Archaea (2)
	Bacteria (2)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (14)
	ELECTRON MICROSCOPY (2)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (17)
	DNA (3)
	RNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (6)
	2.5 - 3.0 (5)
	3.0 - 3.5 (2)
	> 4.5 (2)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (8)
	2015 - 2019 (7)

Enzyme Classification Name

Hydrolases (8)

Symmetry Type

	Asymmetric (14)
	Cyclic (4)

SCOP Classification

Alpha and beta proteins (a/b) (1)

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1 to 17 of 17 Structures

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2E52 \| pdb_00002e52	Download File View File

Crystal structural analysis of HindIII restriction endonuclease in complex with cognate DNA at 2.0 angstrom resolution

Watanabe, N., Sato, C., Tanaka, I.

(2009) Acta Crystallogr D Biol Crystallogr 65: 1326-1333

Released	2007-12-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	Type II restriction enzyme HindIII (protein) DNA (5'-D(DGPDCPDCPDAPDAPDGPDCPDTPDTPDGPDGPDC)-3') (nucleic acid)
Unique Ligands	ACT, GOL

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2LWI \| pdb_00002lwi	Download File View File

Solution structure of H-RasT35S mutant protein in complex with Kobe2601

Araki, M., Tamura, A., Shima, F., Kataoka, T.

(2013) Proc Natl Acad Sci U S A 110: 8182-8187

Released	2013-05-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	GTPase HRas (protein)
Unique Ligands	GNP, KOB, MG

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3A4K \| pdb_00003a4k	Download File View File

Crystal structural analysis of HindIII restriction endonuclease in complex with cognate DNA and divalent cations at 2.17 angstrom resolution

Watanabe, N., Sato, C., Takasaki, Y., Tanaka, I.

(2009) Acta Crystallogr D Biol Crystallogr 65: 1326-1333

Released	2009-10-20
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	Type-2 restriction enzyme HindIII (protein) DNA (5'-D(GPCPCPA)-3') (nucleic acid) DNA (5'-D(GPCPCPAPAPGPCPTPTPGPGPC)-3') (nucleic acid) DNA (5'-D(PAPGPCPTPTPGPGPC)-3') (nucleic acid)
Unique Ligands	ACT, GOL, MG, MN

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3J6H \| pdb_00003j6h	Download File View File

Nucleotide-free Kinesin motor domain complexed with GMPCPP-microtubule

Morikawa, M., Yajima, H., Nitta, R., Inoue, S., Ogura, T., Sato, C., Hirokawa, N.

(2015) EMBO J

Released	2015-04-01
Method	ELECTRON MICROSCOPY 8.1 Å
Organisms	Mus musculus Sus scrofa
Macromolecule	Kinesin heavy chain isoform 5C (protein) Tubulin alpha-1A chain (protein) Tubulin beta chain (protein)
Unique Ligands	G2P, GTP, MG, SO4

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3J7I \| pdb_00003j7i	Download File View File

Structure of alpha- and beta- tubulin in GMPCPP-microtubules

Yajima, H., Ogura, T., Nitta, R., Okada, Y., Sato, C., Hirokawa, N.

(2012) J Cell Biol 198: 315-322

Released	2014-12-10
Method	ELECTRON MICROSCOPY 8.9 Å
Organisms	Sus scrofa
Macromolecule	Tubulin alpha-1A chain (protein) Tubulin beta chain (protein)
Unique Ligands	GTP, MG

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3NK3 \| pdb_00003nk3	Download File View File

Crystal structure of full-length sperm receptor ZP3 at 2.6 A resolution

Monne, M., Jovine, L.

(2010) Cell 143: 404-415

Released	2010-11-10
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Gallus gallus
Macromolecule	Zona pellucida 3 (protein)
Unique Ligands	FLC
Unique branched monosaccharides	A2G, GAL

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3NK4 \| pdb_00003nk4	Download File View File

Crystal structure of full-length sperm receptor ZP3 at 2.0 A resolution

Monne, M., Jovine, L.

(2010) Cell 143: 404-415

Released	2010-11-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Gallus gallus
Macromolecule	Zona pellucida 3 (protein)
Unique Ligands	A2G, FLC

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3WBD \| pdb_00003wbd	Download File View File

Crystal structure of anti-polysialic acid antibody single chain Fv fragment (mAb735) complexed with octasialic acid

Nagae, M., Ikeda, A., Hanashima, S., Kitajima, K., Sato, C., Yamaguchi, Y.

(2013) J Biological Chem 288: 33784-33796

Released	2013-10-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus
Macromolecule	single chain Fv fragment of mAb735 (protein)
Unique Ligands	FLC
Unique branched monosaccharides	SIA

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3WOB \| pdb_00003wob	Download File View File

Crystal structure of a prostate-specific WGA16 glycoprotein lectin, form I

Garenaux, E., Kanagawa, M., Tsuchiyama, T., Hori, K., Kanazawa, T., Goshima, A., Chiba, M., Yasue, H., Ikeda, A., Yamaguchi, Y., Sato, C., Kitajima, K.

(2015) J Biological Chem 290: 5484-5501

Released	2014-12-31
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Sus scrofa
Macromolecule	hypothetical protein (protein)

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3WOC \| pdb_00003woc	Download File View File

Crystal structure of a prostate-specific WGA16 glycoprotein lectin, form II

Garenaux, E., Kanagawa, M., Tsuchiyama, T., Hori, K., Kanazawa, T., Goshima, A., Chiba, M., Yasue, H., Ikeda, A., Yamaguchi, Y., Sato, C., Kitajima, K.

(2015) J Biological Chem 290: 5484-5501

Released	2014-12-31
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Sus scrofa
Macromolecule	hypothetical protein (protein)
Unique Ligands	DIO, GOL, SO4

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3WRD \| pdb_00003wrd	Download File View File

Crystal Structure of the KIF5C Motor Domain Without Any Nucleotide

Inoue, S., Nitta, R., Hirokawa, N.

(2015) EMBO J 34: 1270-1286

Released	2015-04-01
Method	X-RAY DIFFRACTION 2.86 Å
Organisms	Mus musculus
Macromolecule	Kinesin heavy chain isoform 5C (protein)
Unique Ligands	SO4

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3X1L \| pdb_00003x1l	Download File View File

Crystal Structure of the CRISPR-Cas RNA Silencing Cmr Complex Bound to a Target Analog

Osawa, T., Numata, T.

(2015) Mol Cell 58: 418-430

Released	2015-05-13
Method	X-RAY DIFFRACTION 2.096 Å
Organisms	Archaeoglobus fulgidus DSM 4304 Pyrococcus furiosus COM1 Pyrococcus furiosus DSM 3638 synthetic construct
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2
Unique Ligands	MG, ZN

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3X2T \| pdb_00003x2t	Download File View File

Crystal Structure of the KIF5C Motor Domain With ADP

Inoue, S., Nitta, R., Hirokawa, N.

(2015) EMBO J 34: 1270-1286

Released	2015-04-01
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mus musculus
Macromolecule	Kinesin heavy chain isoform 5C (protein)
Unique Ligands	ADP

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4QTS \| pdb_00004qts	Download File View File

Crystal structure of Csm3-Csm4 subcomplex in the type III-A CRISPR-Cas interference complex

Numata, T., Inanaga, H., Osawa, T.

(2015) J Mol Biology 427: 259-273

Released	2014-12-24
Method	X-RAY DIFFRACTION 3.105 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	CRISPR type III-associated RAMP protein Csm3 (protein) CRISPR type III-associated RAMP protein Csm4 (protein)
Unique Ligands	ZN

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6GF6 \| pdb_00006gf6	Download File View File

Molecular basis of egg coat filament cross-linking: high-resolution structure of the partially deglycosylated ZP1 ZP-N1 domain homodimer

Nishimura, K., Jovine, L.

(2019) Nat Commun 10: 3086-3086

Released	2019-06-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Gallus gallus
Macromolecule	Zona pellucida sperm-binding protein 1,Zona pellucida sperm-binding protein 1 (protein)
Unique Ligands	GOL, NAG

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6GF7 \| pdb_00006gf7	Download File View File

Molecular basis of egg coat filament cross-linking: Zn-SAD structure of the partially deglycosylated ZP1 ZP-N1 domain homodimer

Nishimura, K., Jovine, L.

(2019) Nat Commun 10: 3086-3086

Released	2019-06-19
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Gallus gallus
Macromolecule	Zona pellucida sperm-binding protein 1,Zona pellucida sperm-binding protein 1 (protein)
Unique Ligands	NAG, ZN

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6GF8 \| pdb_00006gf8	Download File View File

Molecular basis of egg coat filament cross-linking: structure of the glycosylated ZP1 ZP-N1 domain homodimer

Nishimura, K., Jovine, L.

(2019) Nat Commun 10: 3086-3086

Released	2019-06-19
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Gallus gallus
Macromolecule	Zona pellucida sperm-binding protein 1,Zona pellucida sperm-binding protein 1 (protein)
Unique Ligands	MPD
Unique branched monosaccharides	FUC, NAG

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2E52 | pdb_00002e52

Crystal structural analysis of HindIII restriction endonuclease in complex with cognate DNA at 2.0 angstrom resolution

2LWI | pdb_00002lwi

Solution structure of H-RasT35S mutant protein in complex with Kobe2601

3A4K | pdb_00003a4k

Crystal structural analysis of HindIII restriction endonuclease in complex with cognate DNA and divalent cations at 2.17 angstrom resolution

3J6H | pdb_00003j6h

Nucleotide-free Kinesin motor domain complexed with GMPCPP-microtubule

3J7I | pdb_00003j7i

Structure of alpha- and beta- tubulin in GMPCPP-microtubules

3NK3 | pdb_00003nk3

Crystal structure of full-length sperm receptor ZP3 at 2.6 A resolution

3NK4 | pdb_00003nk4

Crystal structure of full-length sperm receptor ZP3 at 2.0 A resolution

3WBD | pdb_00003wbd

Crystal structure of anti-polysialic acid antibody single chain Fv fragment (mAb735) complexed with octasialic acid

3WOB | pdb_00003wob

Crystal structure of a prostate-specific WGA16 glycoprotein lectin, form I

3WOC | pdb_00003woc

Crystal structure of a prostate-specific WGA16 glycoprotein lectin, form II

3WRD | pdb_00003wrd

Crystal Structure of the KIF5C Motor Domain Without Any Nucleotide

3X1L | pdb_00003x1l

Crystal Structure of the CRISPR-Cas RNA Silencing Cmr Complex Bound to a Target Analog

3X2T | pdb_00003x2t

Crystal Structure of the KIF5C Motor Domain With ADP

4QTS | pdb_00004qts

Crystal structure of Csm3-Csm4 subcomplex in the type III-A CRISPR-Cas interference complex

6GF6 | pdb_00006gf6

Molecular basis of egg coat filament cross-linking: high-resolution structure of the partially deglycosylated ZP1 ZP-N1 domain homodimer

6GF7 | pdb_00006gf7

Molecular basis of egg coat filament cross-linking: Zn-SAD structure of the partially deglycosylated ZP1 ZP-N1 domain homodimer

6GF8 | pdb_00006gf8

Molecular basis of egg coat filament cross-linking: structure of the glycosylated ZP1 ZP-N1 domain homodimer

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2E52 | pdb_00002e52

2LWI | pdb_00002lwi

3A4K | pdb_00003a4k

3J6H | pdb_00003j6h

3J7I | pdb_00003j7i

3NK3 | pdb_00003nk3

3NK4 | pdb_00003nk4

3WBD | pdb_00003wbd

3WOB | pdb_00003wob

3WOC | pdb_00003woc

3WRD | pdb_00003wrd

3X1L | pdb_00003x1l

3X2T | pdb_00003x2t

4QTS | pdb_00004qts

6GF6 | pdb_00006gf6

6GF7 | pdb_00006gf7

6GF8 | pdb_00006gf8