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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Sun, D."

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Search Summary

This query matches 246 Structures.

Refinements

Structure Determination Methodology

experimental (246)

Scientific Name of Source Organism

	Homo sapiens (159)
	Lama glama (13)
	synthetic construct (13)
	Bos taurus (10)
	Escherichia coli (9)
	Geobacillus thermodenitrificans NG80-2 (9)
	Bacillus subtilis subsp. subtilis str. 168 (8)
	Severe acute respiratory syndrome coronavirus 2 (8)
	Rattus (7)
	Arabidopsis thaliana (6)

More...

Taxonomy

	Eukaryota (195)
	Bacteria (36)
	Riboviria (22)
	other sequences (13)
	Varidnaviria (3)
	Duplodnaviria (2)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (165)
	ELECTRON MICROSCOPY (77)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (243)
	DNA (15)
	NA-hybrid (2)
	RNA (1)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (17)
	1.5 - 2.0 (62)
	2.0 - 2.5 (48)
	2.5 - 3.0 (51)
	3.0 - 3.5 (29)
	3.5 - 4.0 (19)
	4.0 - 4.5 (6)
	> 4.5 (5)

Release Date

	1990 - 1994 (1)
	2000 - 2004 (12)
	2005 - 2009 (12)
	2010 - 2014 (31)
	2015 - 2019 (63)
	2020 - 2024 (115)
	2025 - 2029 (12)

Enzyme Classification Name

	Oxidoreductases (26)
	Hydrolases (47)
	Transferases (41)
	Ligases (18)
	Lyases (6)
	Translocases (8)
	Isomerases (2)

Membrane Protein Annotation

	PDBTM (50)
	MemProtMD (29)
	OPM (27)
	mpstruc (25)

Symmetry Type

	Asymmetric (155)
	Cyclic (83)
	Dihedral (13)

SCOP Classification

	All alpha proteins (38)
	Alpha and beta proteins (a/b) (26)
	Alpha and beta proteins (a+b) (26)
	Artifacts (23)
	All beta proteins (12)
	Multi-domain proteins (alpha and beta) (8)
	Membrane and cell surface proteins and peptides (7)
	Small proteins (2)

AllSelected

1 to 25 of 246 Structures

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149L \| pdb_0000149l	Download File View File

CONSERVATION OF SOLVENT-BINDING SITES IN 10 CRYSTAL FORMS OF T4 LYSOZYME

Wilson, K., Matthews, B.W.

(1994) Protein Sci 3: 1031-1039

Released	1994-04-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Tequatrovirus T4
Macromolecule	T4 LYSOZYME (protein)

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1D0E \| pdb_00001d0e	Download File View File

CRYSTAL STRUCTURES OF THE N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE COMPLEXED WITH NUCLEIC ACID: FUNCTIONAL IMPLICATIONS FOR TEMPLATE-PRIMER BINDING TO THE FINGERS DOMAIN

Najmudin, S., Cote, M.L., Sun, D., Yohannan, S., Montano, S.P., Gu, J., Georgiadis, M.M.

(2000) J Mol Biology 296: 613-632

Released	2000-04-04
Method	X-RAY DIFFRACTION 3 Å
Organisms	Moloney murine leukemia virus
Macromolecule	REVERSE TRANSCRIPTASE (protein) 5'-D(TPTPTPCPAPTPGPCPAPTP*G)-3' (nucleic acid)

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1D1U \| pdb_00001d1u	Download File View File

USE OF AN N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE TO FACILITATE CRYSTALLIZATION AND ANALYSIS OF A PSEUDO-16-MER DNA MOLECULE CONTAINING G-A MISPAIRS

Cote, M.L., Yohannan, S., Georgiadis, M.M.

(2000) Acta Crystallogr D Biol Crystallogr 56: 1120-1131

Released	2000-04-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Moloney murine leukemia virus
Macromolecule	PROTEIN (REVERSE TRANSCRIPTASE) (protein) DNA (5'-D(APCPGPGPCPAPCPGPAPG)-3') (nucleic acid) DNA (5'-D(CPTPCPGPTPG)-3') (nucleic acid)

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1GCU \| pdb_00001gcu	Download File View File

CRYSTAL STRUCTURE OF RAT BILIVERDIN REDUCTASE AT 1.4 A

Kikuchi, A., Park, S.Y., Shiro, Y.

(2001) Nat Struct Biol 8: 221-225

Released	2001-02-08
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Rattus norvegicus
Macromolecule	BILIVERDIN REDUCTASE A (protein)

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1MG2 \| pdb_00001mg2	Download File View File

MUTATION OF ALPHA PHE55 OF METHYLAMINE DEHYDROGENASE ALTERS THE REORGANIZATION ENERGY AND ELECTRONIC COUPLING FOR ITS ELECTRON TRANSFER REACTION WITH AMICYANIN

Sun, D., Chen, Z.W., Mathews, F.S., Davidson, V.L.

(2002) Biochemistry 41: 13926-13933

Released	2002-12-11
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Paracoccus denitrificans
Macromolecule	Amicyanin (protein) CYTOCHROME C-L (protein) Methylamine dehydrogenase, heavy chain (protein) Methylamine dehydrogenase, light chain (protein)
Unique Ligands	CU, HEC, NA, PO4

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1MG3 \| pdb_00001mg3	Download File View File

MUTATION OF ALPHA PHE55 OF METHYLAMINE DEHYDROGENASE ALTERS THE REORGANIZATION ENERGY AND ELECTRONIC COUPLING FOR ITS ELECTRON TRANSFER REACTION WITH AMICYANIN

Sun, D., Chen, Z.W., Mathews, F.S., Davidson, V.L.

(2002) Biochemistry 41: 13926-13933

Released	2002-12-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Paracoccus denitrificans
Macromolecule	Amicyanin (protein) CYTOCHROME C-L (protein) Methylamine dehydrogenase, heavy chain (protein) Methylamine dehydrogenase, light chain (protein)
Unique Ligands	CU, HEC, NA, PO4

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1N4L \| pdb_00001n4l	Download File View File

A DNA analogue of the polypurine tract of HIV-1

Cote, M.L., Pflomm, M., Georgiadis, M.M.

(2003) J Mol Biology 330: 57-74

Released	2003-06-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Moloney murine leukemia virus
Macromolecule	Reverse Transcriptase (protein) 5'-D(CPTPTPTPTPCPTPTPTPTPAPAPAPAPAPG)-3' (nucleic acid) 5'-D(CPTPTPTPTPTPAPAPAPAPGPAPAPAPAPG)-3' (nucleic acid)

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1QAI \| pdb_00001qai	Download File View File

CRYSTAL STRUCTURES OF THE N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE COMPLEXED WITH NUCLEIC ACID: FUNCTIONAL IMPLICATIONS FOR TEMPLATE-PRIMER BINDING TO THE FINGERS DOMAIN

Najmudin, S., Cote, M., Sun, D., Yohannan, S., Montano, S.P., Gu, J., Georgiadis, M.M.

(2000) J Mol Biology 296: 613-622

Released	2000-03-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Moloney murine leukemia virus
Macromolecule	REVERSE TRANSCRIPTASE (protein) DNA (5'-D(CPAPTPGPCPAPTPG)-3') (nucleic acid)
Unique Ligands	HG

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1QAJ \| pdb_00001qaj	Download File View File

CRYSTAL STRUCTURES OF THE N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE COMPLEXED WITH NUCLEIC ACID: FUNCTIONAL IMPLICATIONS FOR TEMPLATE-PRIMER BINDING TO THE FINGERS DOMAIN

Najmudin, S., Cote, M., Sun, D., Yohannan, S., Montano, S.P., Gu, J., Georgiadis, M.M.

(2000) J Mol Biology 296: 613-632

Released	2000-04-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Moloney murine leukemia virus
Macromolecule	REVERSE TRANSCRIPTASE (protein) DNA (5'-D(CPAPTPGPCPAPTPG)-3') (nucleic acid)

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1SF3 \| pdb_00001sf3	Download File View File

Structure of the reduced form of the P94A mutant of amicyanin

Carrell, C.J., Sun, D., Jiang, S., Davidson, V.L., Mathews, F.S.

(2004) Biochemistry 43: 9372-9380

Released	2004-07-27
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Paracoccus denitrificans
Macromolecule	Amicyanin (protein)
Unique Ligands	CU1, PO4

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1SF5 \| pdb_00001sf5	Download File View File

Structure of oxidized state of the P94A mutant of amicyanin

Carrell, C.J., Sun, D., Jiang, S., Davidson, V.L., Mathews, F.S.

(2004) Biochemistry 43: 9372-9380

Released	2004-07-27
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Paracoccus denitrificans
Macromolecule	Amicyanin (protein)
Unique Ligands	CU

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1SFD \| pdb_00001sfd	Download File View File

oxidized form of amicyanin mutant P94F

Carrell, C.J., Sun, D., Jiang, S., Davidson, V.L., Mathews, F.S.

(2004) Biochemistry 43: 9372-9380

Released	2004-07-27
Method	X-RAY DIFFRACTION 0.99 Å
Organisms	Paracoccus denitrificans
Macromolecule	Amicyanin (protein)
Unique Ligands	CU, SO4

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1SFH \| pdb_00001sfh	Download File View File

Reduced state of amicyanin mutant P94F

Carrell, C.J., Sun, D., Jiang, S., Davidson, V.L., Mathews, F.S.

(2004) Biochemistry 43: 9372-9380

Released	2004-07-27
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Paracoccus denitrificans
Macromolecule	Amicyanin (protein)
Unique Ligands	CU1, NA

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1ZYF \| pdb_00001zyf	Download File View File

Structure of a Supercoiling Responsive DNA Site

Bae, S.H., Yun, S.H., Sun, D., Lim, H.M., Choi, B.S.

(2006) Nucleic Acids Res 34: 254-261

Released	2006-05-23
Method	SOLUTION NMR
Macromolecule	5'-D(CPAPAPCPCPAPTPGPGPTPTPG)-3' (nucleic acid)

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1ZYG \| pdb_00001zyg	Download File View File

Structure of a Supercoiling Responsive DNA Site

Bae, S.H., Yun, S.H., Sun, D., Lim, H.M., Choi, B.S.

(2006) Nucleic Acids Res 34: 254-261

Released	2006-05-23
Method	SOLUTION NMR
Macromolecule	5'-D(CPAPAPCPCPCPGPGPGPTPTPG)-3' (nucleic acid)

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1ZYH \| pdb_00001zyh	Download File View File

Structure of a Supercoiling Responsive DNA site

Bae, S.H., Yun, S.H., Sun, D., Lim, H.M., Choi, B.S.

(2006) Nucleic Acids Res 34: 254-261

Released	2006-05-23
Method	SOLUTION NMR
Macromolecule	5'-D(CPAPAPCPCPAPGPGPGPTPTPG)-3' (nucleic acid) 5'-D(CPAPAPCPCPCPTPGPGPTPTPG)-3' (nucleic acid)

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2MJY \| pdb_00002mjy	Download File View File

Solution structure of synthetic Mamba-1 peptide

He, Y., Wu, F., Tian, C.

(2014) Chem Commun (Camb) 50: 5837-5839

Released	2015-01-28
Method	SOLUTION NMR
Organisms	Dendraspis polylepis polylepis
Macromolecule	Mambalgin-1 (protein)

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3BBB \| pdb_00003bbb	Download File View File

Crystal structure of the NM23-H2 transcription factor complex with dinucleotide d(AG)

Weichsel, A., Montfort, W.R.

(2009) Mol Cancer Ther 8: 1363-1377

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Nucleoside diphosphate kinase B (protein) DNA (5'-D(APG)-3') (nucleic acid)

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3BBC \| pdb_00003bbc	Download File View File

Crystal structure of R88A mutant of the NM23-H2 transcription factor

Weichsel, A., Montfort, W.R.

(2009) Mol Cancer Ther 8: 1363-1377

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Nucleoside diphosphate kinase B (protein)

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3BBF \| pdb_00003bbf	Download File View File

Crystal structure of the NM23-H2 transcription factor complex with GDP

Weichsel, A., Montfort, W.R.

(2009) Mol Cancer Ther 8: 1363-1377

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Nucleoside diphosphate kinase B (protein)
Unique Ligands	DTT, GDP, MG

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3CZR \| pdb_00003czr	Download File View File

Crystal Structure of Human 11-beta-Hydroxysteroid Dehydrogenase (HSD1) in Complex with Arylsulfonylpiperazine Inhibitor

Wang, Z., Sudom, A., Walker, N.P.

(2008) Bioorg Med Chem Lett 18: 3513-3516

Released	2008-06-17
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	Corticosteroid 11-beta-dehydrogenase isozyme 1 (protein)
Unique Ligands	3CZ, CPS, NAP

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3D3E \| pdb_00003d3e	Download File View File

Crystal Structure of Human 11-beta-Hydroxysteroid Dehydrogenase (HSD1) in Complex with Benzamide Inhibitor

Wang, Z., Sudom, A., Liu, J., Walker, N.P.

(2008) J Med Chem 51: 3953-3960

Released	2008-07-01
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Corticosteroid 11-beta-dehydrogenase isozyme 1 (protein)
Unique Ligands	D3E, NAP

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3D4N \| pdb_00003d4n	Download File View File

Crystal Structure of Human 11-beta-Hydroxysteroid Dehydrogenase (HSD1) in Complex with Sulfonamide Inhibitor

Wang, Z., Liu, J., Sudom, A., Walker, N.P.

(2008) J Med Chem 51: 3953-3960

Released	2008-07-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Corticosteroid 11-beta-dehydrogenase isozyme 1 (protein)
Unique Ligands	D4N, NAP

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3D5Q \| pdb_00003d5q	Download File View File

Crystal Structure of 11b-HSD1 in Complex with Triazole Inhibitor

Wang, Z., Liu, J., Sudom, A., Walker, N.P.C.

(2008) Bioorg Med Chem 16: 8922-8931

Released	2008-10-07
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	Corticosteroid 11-beta-dehydrogenase isozyme 1 (protein)
Unique Ligands	NAP, T30

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3FCO \| pdb_00003fco	Download File View File

Crystal Structure of 11beta-Hydroxysteroid Dehydrogenase 1 (11b-HSD1) in Complex with Benzamide Inhibitor

Wang, Z., Sudom, A., Walker, N.P.

(2009) Bioorg Med Chem Lett 19: 1446-1450

Released	2009-12-01
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Corticosteroid 11-beta-dehydrogenase isozyme 1 (protein)
Unique Ligands	IIG, NAP

1 to 25 of 246 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

149L | pdb_0000149l

1D0E | pdb_00001d0e

1D1U | pdb_00001d1u

1GCU | pdb_00001gcu

1MG2 | pdb_00001mg2

1MG3 | pdb_00001mg3

1N4L | pdb_00001n4l

1QAI | pdb_00001qai

1QAJ | pdb_00001qaj

1SF3 | pdb_00001sf3

1SF5 | pdb_00001sf5

1SFD | pdb_00001sfd

1SFH | pdb_00001sfh

1ZYF | pdb_00001zyf

1ZYG | pdb_00001zyg

1ZYH | pdb_00001zyh

2MJY | pdb_00002mjy

3BBB | pdb_00003bbb

3BBC | pdb_00003bbc

3BBF | pdb_00003bbf

3CZR | pdb_00003czr

3D3E | pdb_00003d3e

3D4N | pdb_00003d4n

3D5Q | pdb_00003d5q

3FCO | pdb_00003fco