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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Utsunomiya-Tate, N."

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

Homo sapiens (12)

Taxonomy

Eukaryota (12)

Experimental Method

	SOLUTION NMR (8)
	ELECTRON MICROSCOPY (4)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	2.5 - 3.0 (3)
	3.0 - 3.5 (1)

Release Date

	1995 - 1999 (2)
	2005 - 2009 (1)
	2010 - 2014 (2)
	2015 - 2019 (3)
	2025 - 2029 (4)

Enzyme Classification Name

Isomerases (5)

Symmetry Type

	Asymmetric (9)
	Cyclic (2)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (7)
	Artifacts (5)

AllSelected

1 to 12 of 12 Structures

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1CYU \| pdb_00001cyu	Download File View File

SOLUTION NMR STRUCTURE OF RECOMBINANT HUMAN CYSTATIN A UNDER THE CONDITION OF PH 3.8 AND 310K

Tate, S., Tate, N.U., Ushioda, T., Samejima, T., Kainosho, M.

(1995) Biochemistry 34: 14637-14648

Released	1995-12-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CYSTATIN A (protein)

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1CYV \| pdb_00001cyv	Download File View File

SOLUTION NMR STRUCTURE OF RECOMBINANT HUMAN CYSTATIN A UNDER THE CONDITION OF PH 3.8 AND 310K

Tate, S., Tate, N.U., Ushioda, T., Samejima, T., Kainosho, M.

(1995) Biochemistry 34: 14637-14648

Released	1995-12-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CYSTATIN A (protein)

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2RPC \| pdb_00002rpc	Download File View File

Solution structure of the tandem zf-C2H2 domains from the human zinc finger protein ZIC 3

Tomizawa, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Hum Mol Genet 17: 3459-3473

Released	2009-03-31
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Zinc finger protein ZIC 3 (protein)
Unique Ligands	ZN

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2RUC \| pdb_00002ruc	Download File View File

Solution structure of the peptidyl prolyl cis-trans isomerase domain of human Pin1 with sulfate ion

Xu, N., Tamari, Y., Tochio, N., Tate, S.

(2014) Biochemistry 53: 5568-5578

Released	2014-12-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (protein)

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2RUD \| pdb_00002rud	Download File View File

Solution structure of the peptidyl prolyl cis-trans isomerase domain of C113D mutant human Pin1 with sulfate ion

Xu, N., Tamari, Y., Tochio, N., Tate, S.

(2014) Biochemistry 53: 5568-5578

Released	2014-12-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (protein)

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2RUQ \| pdb_00002ruq	Download File View File

solution structure of human Pin1 PPIase mutant C113A

Jing, W., Tochio, N., Tate, S.

(2015) Biochemistry 54: 5242-5253

Released	2016-01-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (protein)

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2RUR \| pdb_00002rur	Download File View File

Solution structure of Human Pin1 PPIase C113S mutant

Jing, W., Tochio, N., Tate, S.

(2015) Biochemistry 54: 5242-5253

Released	2016-01-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (protein)

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5GPH \| pdb_00005gph	Download File View File

Solution structure of the Pin1-PPIase (S138A) mutant

Tochio, N., Wang, J., Tate, S.

To be published

Released	2017-08-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (protein)

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9JAZ \| pdb_00009jaz	Download File View File

Cryo-EM structure of the class I amyloid-beta 42 fibril containing a D-Asp at position 23

Hsiao, L.C., Lee, C.H., Hsu, M.F., Hsu, S.T.

(2025) J Mol Biology 169092

Released	2025-03-26
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens
Macromolecule	Amyloid-beta precursor protein (protein)

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9JB0 \| pdb_00009jb0	Download File View File

Cryo-EM structure of the class II amyloid-beta 42 fibril containing a D-Asp at position 23

Hsiao, L.C., Lee, C.H., Hsu, M.F., Hsu, S.T.

(2025) J Mol Biology 169092

Released	2025-03-26
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens
Macromolecule	Amyloid-beta precursor protein (protein)

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9JB1 \| pdb_00009jb1	Download File View File

Cryo-EM structure of the type I amyloid-beta 42 fibril containing a D-Asp at positions 7 and 23

Hsiao, L.C., Lee, C.H., Hsu, M.F., Hsu, S.T.

(2025) J Mol Biology 169092

Released	2025-03-26
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Homo sapiens
Macromolecule	Amyloid-beta precursor protein (protein)

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9JB2 \| pdb_00009jb2	Download File View File

Cryo-EM structure of the type II amyloid-beta 42 fibril containing a D-Asp at positions 7 and 23

Hsiao, L.C., Lee, C.H., Hsu, M.F., Hsu, S.T.

(2025) J Mol Biology 169092

Released	2025-03-26
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens
Macromolecule	Amyloid-beta precursor protein (protein)

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1CYU | pdb_00001cyu

SOLUTION NMR STRUCTURE OF RECOMBINANT HUMAN CYSTATIN A UNDER THE CONDITION OF PH 3.8 AND 310K

1CYV | pdb_00001cyv

SOLUTION NMR STRUCTURE OF RECOMBINANT HUMAN CYSTATIN A UNDER THE CONDITION OF PH 3.8 AND 310K

2RPC | pdb_00002rpc

Solution structure of the tandem zf-C2H2 domains from the human zinc finger protein ZIC 3

2RUC | pdb_00002ruc

Solution structure of the peptidyl prolyl cis-trans isomerase domain of human Pin1 with sulfate ion

2RUD | pdb_00002rud

Solution structure of the peptidyl prolyl cis-trans isomerase domain of C113D mutant human Pin1 with sulfate ion

2RUQ | pdb_00002ruq

solution structure of human Pin1 PPIase mutant C113A

2RUR | pdb_00002rur

Solution structure of Human Pin1 PPIase C113S mutant

5GPH | pdb_00005gph

Solution structure of the Pin1-PPIase (S138A) mutant

9JAZ | pdb_00009jaz

Cryo-EM structure of the class I amyloid-beta 42 fibril containing a D-Asp at position 23

9JB0 | pdb_00009jb0

Cryo-EM structure of the class II amyloid-beta 42 fibril containing a D-Asp at position 23

9JB1 | pdb_00009jb1

Cryo-EM structure of the type I amyloid-beta 42 fibril containing a D-Asp at positions 7 and 23

9JB2 | pdb_00009jb2

Cryo-EM structure of the type II amyloid-beta 42 fibril containing a D-Asp at positions 7 and 23

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1CYU | pdb_00001cyu

1CYV | pdb_00001cyv

2RPC | pdb_00002rpc

2RUC | pdb_00002ruc

2RUD | pdb_00002rud

2RUQ | pdb_00002ruq

2RUR | pdb_00002rur

5GPH | pdb_00005gph

9JAZ | pdb_00009jaz

9JB0 | pdb_00009jb0

9JB1 | pdb_00009jb1

9JB2 | pdb_00009jb2