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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Wang, Y.X."

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Search Summary

This query matches 109 Structures.

Refinements

Structure Determination Methodology

experimental (109)

Scientific Name of Source Organism

	Homo sapiens (20)
	Sus scrofa (19)
	Gallus gallus (14)
	Vibrio vulnificus (12)
	Janthinobacterium sp. J3 (9)
	Mus musculus (7)
	Rattus norvegicus (7)
	Caldanaerobacter subterraneus subsp. tengcongensis (5)
	Glycyrrhiza glabra (5)
	Saccharomyces cerevisiae (5)

More...

Taxonomy

	Eukaryota (60)
	Bacteria (40)
	Riboviria (6)
	other sequences (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (73)
	SOLUTION NMR (20)
	ELECTRON MICROSCOPY (16)
	SOLUTION SCATTERING (4)

Polymer Entity Type

	Protein (83)
	RNA (28)

Refinement Resolution (Å)

	1.5 - 2.0 (14)
	2.0 - 2.5 (21)
	2.5 - 3.0 (33)
	3.0 - 3.5 (15)
	3.5 - 4.0 (3)
	4.0 - 4.5 (1)
	> 4.5 (2)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (4)
	2005 - 2009 (12)
	2010 - 2014 (7)
	2015 - 2019 (21)
	2020 - 2024 (59)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (23)
	Translocases (7)
	Ligases (6)
	Transferases (6)
	Oxidoreductases (3)

Membrane Protein Annotation

PDBTM (1)

Symmetry Type

	Asymmetric (51)
	Cyclic (30)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a+b) (21)
	Alpha and beta proteins (a/b) (10)
	All beta proteins (12)
	Artifacts (10)
	All alpha proteins (11)
	Multi-domain proteins (alpha and beta) (1)
	Small proteins (1)

AllSelected

1 to 25 of 109 Structures

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1BVE \| pdb_00001bve	Download File View File

HIV-1 PROTEASE-DMP323 COMPLEX IN SOLUTION, NMR, 28 STRUCTURES

Yamazaki, T., Hinck, A.P., Wang, Y.-X., Nicholson, L.K., Torchia, D.A., Wingfield, P., Stahl, S.J., Kaufman, J.D., Chang, C., Domaille, P.J., Lam, P.Y.S.

(1996) Protein Sci 5: 495-506

Released	1996-08-17
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	DMP

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1BVG \| pdb_00001bvg	Download File View File

HIV-1 PROTEASE-DMP323 COMPLEX IN SOLUTION, NMR MINIMIZED AVERAGE STRUCTURE

Yamazaki, T., Hinck, A.P., Wang, Y.-X., Nicholson, L.K., Torchia, D.A., Wingfield, P., Stahl, S.J., Kaufman, J.D., Chang, C., Domaille, P.J., Lam, P.Y.S.

(1996) Protein Sci 5: 495-506

Released	1996-08-17
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	DMP

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1D8V \| pdb_00001d8v	Download File View File

THE RESTRAINED AND MINIMIZED AVERAGE NMR STRUCTURE OF MAP30.

Wang, Y.-X., Neamati, N., Jacob, J., Palmer, I., Stahl, S.J.

(1999) Cell 99: 433-435

Released	1999-11-19
Method	SOLUTION NMR
Organisms	Momordica charantia
Macromolecule	ANTI-HIV AND ANTI-TUMOR PROTEIN MAP30 (protein)

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1OP1 \| pdb_00001op1	Download File View File

Solution NMR structure of domain 1 of receptor associated protein

Wu, Y., Migliorini, M., Yu, P., Strickland, D.K., Wang, Y.-X.

(2003) J Biomol NMR 26: 187-188

Released	2003-08-26
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Alpha-2-macroglobulin receptor-associated protein precursor (protein)

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1OV2 \| pdb_00001ov2	Download File View File

Ensemble of the solution structures of domain one of receptor associated protein

Wu, Y., Migliorini, M., Yu, P., Strickland, D.K., Wang, Y.X.

(2003) J Biomol NMR 26: 187-188

Released	2004-04-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Alpha-2-macroglobulin receptor-associated protein precursor (protein)

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1S2F \| pdb_00001s2f	Download File View File

Average solution structure of a pseudo-5'-splice site from the negative regulator of splicing of Rous Sarcoma virus

Cabello-Villegas, J., Giles, K.E., Soto, A.M., Yu, P., Beemon, K.L., Wang, Y.X.

(2004) RNA 10: 1388-1398

Released	2004-08-31
Method	SOLUTION NMR
Macromolecule	5'-R(GPGPGPGPAPGPUPGPGPUPUPUPGPUPAPUPCPCPUPUPCPCP*C)-3' (nucleic acid)

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1S34 \| pdb_00001s34	Download File View File

Solution structure of residues 907-929 from Rous Sarcoma Virus

Cabello-Villegas, J., Giles, K.E., Soto, A.M., Yu, P., Beemon, K.L., Wang, Y.X.

(2004) RNA 10: 1388-1398

Released	2004-08-31
Method	SOLUTION NMR
Macromolecule	5'-R(GPGPGPGPAPGPUPGPGPUPUPUPGPUPAPUPCPCPUPUPCPCP*C)-3' (nucleic acid)

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2E34 \| pdb_00002e34	Download File View File

L11 structure with RDC and RG refinement

Lee, D., Walsh, J.D., Yu, P., Markus, M.A., Choli-Papadopoulous, T., Schwieters, C.D., Krueger, S., Draper, D.E., Wang, Y.X.

(2007) J Mol Biology 367: 1007-1022

Released	2007-06-19
Method	SOLUTION NMR
Organisms	Thermus thermophilus
Macromolecule	50S ribosomal protein L11 (protein)

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2E35 \| pdb_00002e35	Download File View File

the minimized average structure of L11 with rg refinement

Lee, D., Walsh, J.D., Yu, P., Markus, M.A., Choli-Papadopoulous, T., Schwieters, C.D., Krueger, S., Draper, D.E., Wang, Y.X.

(2007) J Mol Biology 367: 1007-1022

Released	2007-06-19
Method	SOLUTION NMR
Organisms	Thermus thermophilus
Macromolecule	50S ribosomal protein L11 (protein)

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2E36 \| pdb_00002e36	Download File View File

L11 with SANS refinement

Lee, D., Walsh, J.D., Yu, P., Markus, M.A., Choli-Papadopoulous, T., Schwieters, C.D., Krueger, S., Draper, D.E., Wang, Y.X.

(2007) J Mol Biology 367: 1007-1022

Released	2007-06-19
Method	SOLUTION NMR
Organisms	Thermus thermophilus
Macromolecule	50S ribosomal protein L11 (protein)

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2FTU \| pdb_00002ftu	Download File View File

solution structure of domain 3 of RAP

Lee, D., Walsh, J.D., Wang, Y.-X.

(2006) Mol Cell 22: 423-430

Released	2006-05-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Alpha-2-macroglobulin receptor-associated protein, domain 3 (protein)

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2KLJ \| pdb_00002klj	Download File View File

Solution Structure of gammaD-Crystallin with RDC and SAXS

Wang, J., Zuo, X., Yu, P., Byeon, I., Jung, J., Gronenborn, A.M., Wang, Y.

(2009) J Am Chem Soc 131: 10507-10515

Released	2009-10-06
Method	SOLUTION SCATTERING SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Gamma-crystallin D (protein)

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2KLK \| pdb_00002klk	Download File View File

Solution structure of GB1 A34F mutant with RDC and SAXS

Wang, J., Zuo, X., Yu, P., Byeon, I.L., Jung, J., Schwieters, C.D., Gronenborn, A.M., Wang, Y.

(2009) J Am Chem Soc 131: 10507-10515

Released	2009-10-06
Method	SOLUTION SCATTERING SOLUTION NMR
Organisms	Staphylococcus aureus
Macromolecule	IMMUNOGLOBULIN G-BINDING PROTEIN G (protein)

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2KLM \| pdb_00002klm	Download File View File

Solution Structure of L11 with SAXS and RDC

Wang, J., Zuo, X., Yu, P., Schwieters, C.D., Wang, Y.

(2009) J Am Chem Soc 131: 10507-10515

Released	2009-10-06
Method	SOLUTION SCATTERING SOLUTION NMR
Organisms	Thermus thermophilus
Macromolecule	50S ribosomal protein L11 (protein)

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2KRL \| pdb_00002krl	Download File View File

The ensemble of the solution global structures of the 102-nt ribosome binding structure element of the turnip crinkle virus 3' UTR RNA

Zuo, X., Wang, J., Yu, P., Eyler, D., Xu, H., Starich, M., Tiede, D., Simon, A., Kasprzak, W., Schwieters, C., Shapiro, B.

(2010) Proc Natl Acad Sci U S A 107: 1385-1390

Released	2011-02-09
Method	SOLUTION NMR SOLUTION SCATTERING
Organisms	Turnip crinkle virus
Macromolecule	RNA (102-MER) (nucleic acid)

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2L3R \| pdb_00002l3r	Download File View File

NMR structure of UHRF1 Tandem Tudor Domains in a complex with Histone H3 peptide

Nady, N., Lemak, A., Fares, C., Gutmanas, A., Avvakumov, G., Xue, S., Arrowsmith, C., Structural Genomics Consortium (SGC)

(2011) J Biological Chem 286: 24300-24311

Released	2011-04-13
Method	SOLUTION NMR
Organisms	Homo sapiens synthetic construct
Macromolecule	E3 ubiquitin-protein ligase UHRF1 (protein) Histone H3 (protein)

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2LK3 \| pdb_00002lk3	Download File View File

U2/U6 Helix I

Burke, J.E., Sashital, D.G., Zuo, X.E., Wang, Y., Butcher, S.E.

(2012) RNA 18: 673-683

Released	2012-02-22
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	RNA (5'-R(GPGPCPUPUPAPGPAPUPCPAPGPAPAPAPUPGPAPUPCPAPGPCPC)-3') (nucleic acid)

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2LKR \| pdb_00002lkr	Download File View File

Yeast U2/U6 complex

Burke, J.E., Sashital, D.G., Zuo, X., Wang, Y., Butcher, S.E.

(2012) RNA 18: 673-683

Released	2012-02-22
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	RNA (111-MER) (nucleic acid)

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2P01 \| pdb_00002p01	Download File View File

The structure of receptor-associated protein(RAP)

Lee, D., Walsh, J.D., Migliorini, M., Yu, P., Cai, T., Schwieters, C.D., Krueger, S., Strickland, D.K., Wang, Y.X.

(2007) Protein Sci 16: 1628-1640

Released	2007-08-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Alpha-2-macroglobulin receptor-associated protein (protein)

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2P03 \| pdb_00002p03	Download File View File

The structure of receptor-associated protein(RAP)

Lee, D., Walsh, J.D., Migliorini, M., Yu, P., Cai, T., Schwieters, C.D., Krueger, S., Strickland, D.K., Wang, Y.X.

(2007) Protein Sci 16: 1628-1640

Released	2007-08-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Alpha-2-macroglobulin receptor-associated protein (protein)

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2P3T \| pdb_00002p3t	Download File View File

Crystal structure of human factor XA complexed with 3-Chloro-4-(2-methylamino-imidazol-1-ylmethyl)-thiophene-2-carboxylic acid [4-chloro-2-(5-chloro-pyridin-2-ylcarbamoyl)-6-methoxy-phenyl]-amide

Adler, M., Whitlow, M.

(2007) J Med Chem 50: 2967-2980

Released	2008-01-22
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor X (protein)
Unique Ligands	993, CA, CL

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3DB3 \| pdb_00003db3	Download File View File

Crystal structure of the tandem tudor domains of the E3 ubiquitin-protein ligase UHRF1 in complex with trimethylated histone H3-K9 peptide

Walker, J.R., Avvakumov, G.V., Xue, S., Dong, A., Li, Y., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2011) J Biological Chem 286: 24300-24311

Released	2008-09-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase UHRF1 (protein) Trimethylated histone H3-K9 peptide (protein)