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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Wohrl, B.M."

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Search Summary

This query matches 105 Structures.

Refinements

Structure Determination Methodology

experimental (105)

Scientific Name of Source Organism

	Cryphonectria parasitica (86)
	Homo sapiens (18)
	Human alphaherpesvirus 1 strain 17 (1)

Taxonomy

	Eukaryota (104)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (103)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (105)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (66)
	1.5 - 2.0 (26)
	2.0 - 2.5 (4)
	2.5 - 3.0 (5)
	3.0 - 3.5 (1)

Release Date

	1995 - 1999 (1)
	2005 - 2009 (1)
	2010 - 2014 (23)
	2015 - 2019 (75)
	2020 - 2024 (5)

Enzyme Classification Name

	Hydrolases (88)
	Transferases (14)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (101)
	Cyclic (4)

SCOP Classification

	All beta proteins (86)
	All alpha proteins (1)
	Alpha and beta proteins (a+b) (1)
	Peptides (1)

AllSelected

1 to 25 of 105 Structures

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1QLO \| pdb_00001qlo	Download File View File

Structure of the active domain of the herpes simplex virus protein ICP47 in water/sodium dodecyl sulfate solution determined by nuclear magnetic resonance spectroscopy

Pfaender, R., Neumann, L., Zweckstetter, M., Seger, C., Holak, T.A., Tampe, R.

(1999) Biochemistry 38: 13692

Released	1999-12-14
Method	SOLUTION NMR
Organisms	Human alphaherpesvirus 1 strain 17
Macromolecule	HERPES SIMPLEX VIRUS PROTEIN ICP47 (protein)

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2BZ2 \| pdb_00002bz2	Download File View File

Solution structure of NELF E RRM

Schweimer, K., Rao, J.N., Neumann, L., Rosch, P., Wohrl, B.M.

(2006) Biochem J 400: 449-456

Released	2006-08-16
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	NEGATIVE ELONGATION FACTOR E (protein)

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3PB5 \| pdb_00003pb5	Download File View File

Endothiapepsin in complex with a fragment

Koester, H., Heine, A., Klebe, G.

(2011) J Med Chem 54: 7784-7796

Released	2011-10-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	F63, GOL

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3PBD \| pdb_00003pbd	Download File View File

Endothiapepsin in complex with a fragment

Koester, H., Heine, A., Klebe, G.

(2011) J Med Chem 54: 7784-7796

Released	2011-10-19
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	F05, GOL

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3PBZ \| pdb_00003pbz	Download File View File

Endothiapepsin in complex with a fragment

Koester, H., Heine, A., Klebe, G.

(2011) J Med Chem 54: 7784-7796

Released	2011-10-19
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	DMS, F02, GOL

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3PCW \| pdb_00003pcw	Download File View File

Endothiapepsin in complex with a fragment

Koester, H., Heine, A., Klebe, G.

(2011) J Med Chem 54: 7784-7796

Released	2011-10-19
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	DMS, FBF, GOL

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3PGI \| pdb_00003pgi	Download File View File

Endothiapepsin in complex with a fragment

Koester, H., Heine, A., Klebe, G.

(2011) J Med Chem 54: 7784-7796

Released	2011-10-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	F41, GOL

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3PI0 \| pdb_00003pi0	Download File View File

Endothiapepsin in complex with a fragment

Koester, H., Heine, A., Klebe, G.

(2011) J Med Chem 54: 7784-7796

Released	2011-11-02
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	DMS, F91, GOL

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3PLD \| pdb_00003pld	Download File View File

Endothiapepsin in complex with a fragment

Koester, H., Heine, A., Klebe, G.

(2011) J Med Chem 54: 7784-7796

Released	2011-11-02
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	F90, GOL

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3PLL \| pdb_00003pll	Download File View File

Endothiapepsin in complex with a fragment

Koester, H., Heine, A., Klebe, G.

(2011) J Med Chem 54: 7784-7796

Released	2011-11-02
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	F06, GOL

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3PM4 \| pdb_00003pm4	Download File View File

Endothiapepsin in complex with a fragment

Koester, H., Heine, A., Klebe, G.

(2011) J Med Chem 54: 7784-7796

Released	2011-11-02
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	F5N, GOL

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3PMU \| pdb_00003pmu	Download File View File

Endothiapepsin in complex with a fragment

Koester, H., Heine, A., Klebe, G.

(2011) J Med Chem 54: 7784-7796

Released	2011-11-02
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	F7L

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3PMY \| pdb_00003pmy	Download File View File

Endothiapepsin in complex with a fragment

Koester, H., Heine, A., Klebe, G.

(2011) J Med Chem 54: 7784-7796

Released	2011-11-02
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	41L, GOL

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3RGF \| pdb_00003rgf	Download File View File

Crystal Structure of human CDK8/CycC

Schneider, E.V., Boettcher, J., Blaesse, M., Huber, R., Maskos, K.

(2011) J Mol Biology 412: 251-266

Released	2011-08-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-C (protein) Cyclin-dependent kinase 8 (protein)
Unique Ligands	BAX, EDO, GOL

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4F6S \| pdb_00004f6s	Download File View File

Crystal structure of human CDK8/CYCC in complex with compound 7 (1-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]urea)

Schneider, E.V., Boettcher, J., Huber, R., Maskos, K.

(2013) Proc Natl Acad Sci U S A 110: 8081-8086

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-C (protein) Cyclin-dependent kinase 8 (protein)
Unique Ligands	0SQ, EDO, FMT

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4F6U \| pdb_00004f6u	Download File View File

Crystal structure of human CDK8/CYCC in complex with compound 5 (1-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]-3-[3-(morpholin-4-yl)propyl]urea)

Schneider, E.V., Boettcher, J., Huber, R., Maskos, K.

(2013) Proc Natl Acad Sci U S A 110: 8081-8086

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-C (protein) Cyclin-dependent kinase 8 (protein)
Unique Ligands	0SR, DMS, EDO, FMT, NA

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4F6W \| pdb_00004f6w	Download File View File

Crystal structure of human CDK8/CYCC in complex with compound 1 (N-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]-4-[2-({[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]carbamoyl}amino)ethyl]piperazine-1-carboxamide)

Schneider, E.V., Boettcher, J., Huber, R., Maskos, K.

(2013) Proc Natl Acad Sci U S A 110: 8081-8086

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-C (protein) Cyclin-dependent kinase 8 (protein)
Unique Ligands	0SS, DMS, EDO, FMT

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4F70 \| pdb_00004f70	Download File View File

Crystal structure of human CDK8/CYCC in complex with compound 4 (1-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]-3-[2-(morpholin-4-yl)ethyl]urea)

Schneider, E.V., Boettcher, J., Huber, R., Maskos, K.

(2013) Proc Natl Acad Sci U S A 110: 8081-8086

Released	2013-05-01
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-C (protein) Cyclin-dependent kinase 8 (protein)
Unique Ligands	0ST, EDO

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4F7J \| pdb_00004f7j	Download File View File

Crystal structure of human CDK8/CYCC in complex with compound 3 (1-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]-3-(2-hydroxyethyl)urea)

Schneider, E.V., Boettcher, J., Huber, R., Maskos, K.

(2013) Proc Natl Acad Sci U S A 110: 8081-8086

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-C (protein) Cyclin-dependent kinase 8 (protein)
Unique Ligands	0SU, EDO, FMT

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4F7L \| pdb_00004f7l	Download File View File

Crystal structure of human CDK8/CYCC in complex with compound 2 (tert-butyl [3-({[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]carbamoyl}amino)propyl]carbamate)

Schneider, E.V., Boettcher, J., Huber, R., Maskos, K.

(2013) Proc Natl Acad Sci U S A 110: 8081-8086

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-C (protein) Cyclin-dependent kinase 8 (protein)
Unique Ligands	0SO

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4F7N \| pdb_00004f7n	Download File View File

Crystal structure of human CDK8/CYCC in complex with compound 11 (1-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]-3-(5-hydroxypentyl)urea)

Schneider, E.V., Boettcher, J., Huber, R., Maskos, K.

(2013) Proc Natl Acad Sci U S A 110: 8081-8086

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-C (protein) Cyclin-dependent kinase 8 (protein)
Unique Ligands	0SV, EDO

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4F7S \| pdb_00004f7s	Download File View File

Crystal structure of human CDK8/CYCC in the DMG-in conformation

Schneider, E.V., Boettcher, J., Huber, R., Maskos, K.

(2013) Proc Natl Acad Sci U S A 110: 8081-8086

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-C (protein) Cyclin-dependent kinase 8 (protein)
Unique Ligands	0SW, EDO, FMT

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4G6L \| pdb_00004g6l	Download File View File

Crystal structure of human CDK8/CYCC in the DMG-in conformation

Schneider, E.V., Blaesse, M., Huber, R., Maskos, K.

(2013) Proc Natl Acad Sci U S A 110: 8081-8086

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-C (protein) Cyclin-dependent kinase 8 (protein)
Unique Ligands	FMT

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4LXZ \| pdb_00004lxz	Download File View File

Structure of Human HDAC2 in complex with SAHA (vorinostat)

Fong, R., Lupardus, P.J.

(2013) J Biological Chem 288: 26926-26943

Released	2013-08-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 2 (protein)
Unique Ligands	CA, NA, NHE, PG4, SHH, ZN

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4LY1 \| pdb_00004ly1	Download File View File

Structure of Human HDAC2 in complex with inhibitor 4-(acetylamino)-N-[2-amino-5-(thiophen-2-yl)phenyl]benzamide

Fong, R., Lupardus, P.J.

(2013) J Biological Chem 288: 26926-26943

Released	2013-08-21
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 2 (protein)
Unique Ligands	20Y, CA, NA, NHE, PG4, ZN

1 to 25 of 105 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1QLO | pdb_00001qlo

2BZ2 | pdb_00002bz2

3PB5 | pdb_00003pb5

3PBD | pdb_00003pbd

3PBZ | pdb_00003pbz

3PCW | pdb_00003pcw

3PGI | pdb_00003pgi

3PI0 | pdb_00003pi0

3PLD | pdb_00003pld

3PLL | pdb_00003pll

3PM4 | pdb_00003pm4

3PMU | pdb_00003pmu

3PMY | pdb_00003pmy

3RGF | pdb_00003rgf

4F6S | pdb_00004f6s

4F6U | pdb_00004f6u

4F6W | pdb_00004f6w

4F70 | pdb_00004f70

4F7J | pdb_00004f7j

4F7L | pdb_00004f7l

4F7N | pdb_00004f7n

4F7S | pdb_00004f7s

4G6L | pdb_00004g6l

4LXZ | pdb_00004lxz

4LY1 | pdb_00004ly1