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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = DGL

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Search Summary

This query matches 220 Structures.

Refinements

Structure Determination Methodology

experimental (220)

Scientific Name of Source Organism

	Homo sapiens (86)
	synthetic construct (54)
	Helicobacter pylori (10)
	Gallus gallus (7)
	Staphylococcus aureus (6)
	Pseudomonas aeruginosa (4)
	Bacteroides thetaiotaomicron (3)
	Enterococcus faecalis (3)
	Oldenlandia affinis (3)
	Streptomyces avidinii (3)

More...

Taxonomy

	Eukaryota (112)
	Bacteria (65)
	other sequences (55)
	Duplodnaviria (4)
	Eukaryota (eukaryotes) (2)
	Riboviria (2)
	Riboviria (RNA viruses and viroids) (1)
	unclassified bacterial viruses (1)

Experimental Method

	X-RAY DIFFRACTION (198)
	SOLUTION NMR (20)
	SOLID-STATE NMR (2)

Polymer Entity Type

Protein (220)

Refinement Resolution (Å)

	0.5 - 1.0 (5)
	1.0 - 1.5 (42)
	1.5 - 2.0 (73)
	2.0 - 2.5 (58)
	2.5 - 3.0 (17)
	3.0 - 3.5 (3)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (9)
	2000 - 2004 (2)
	2005 - 2009 (24)
	2010 - 2014 (38)
	2015 - 2019 (52)
	2020 - 2024 (87)
	2025 - 2029 (7)

Enzyme Classification Name

	Isomerases (28)
	Hydrolases (15)
	Transferases (14)
	Lyases (5)
	Ligases (3)

Membrane Protein Annotation

OPM (4)

Symmetry Type

	Asymmetric (137)
	Cyclic (54)
	Dihedral (6)

SCOP Classification

	Alpha and beta proteins (a/b) (8)
	All beta proteins (10)
	Alpha and beta proteins (a+b) (8)
	Artifacts (3)
	Coiled coil proteins (3)
	Peptides (3)

AllSelected

1 to 25 of 220 Structures

Page 1 of 9

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1C4B \| pdb_00001c4b	Download File View File

A BETA-HAIRPIN MIMIC FROM FCERI-ALPHA-CYCLO(RD-262)

Mcdonnell, J.M., Fushman, D., Cahill, S.M., Sutton, B.J., Cowburn, D.

(1997) J Am Chem Soc 119: 5321-5328

Released	1999-08-25
Method	SOLUTION NMR
Macromolecule	PROTEIN (CYCLO(RD-262)) (protein)

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1CVQ \| pdb_00001cvq	Download File View File

SOLUTION STRUCTURE OF THE ANALOGUE RETRO-INVERSO MGREGRIGGC IN CONTACT WITH THE MONOCLONAL ANTIBODY MAB 4X11, NMR, 7 STRUCTURES

Phan Chan Du, A., Petit, M.C., Guichard, G., Briand, J.P., Muller, S., Cung, M.T.

(2001) Biochemistry 40: 5720-5727

Released	1999-09-02
Method	SOLUTION NMR
Macromolecule	HISTONE H3 (protein)

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1CW8 \| pdb_00001cw8	Download File View File

SOLUTION STRUCTURE OF THE ANALOGUE RETRO-INVERSO (mA-R)REGRIGGC IN CONTACT WITH THE MONOCLONAL ANTIBODY MAB 4X11, NMR, 6 STRUCTURES

Phan Chan Du, A., Petit, M.C., Guichard, G., Briand, J.P., Muller, S., Cung, T.

(2001) Biochemistry 40: 5720-5727

Released	1999-09-03
Method	SOLUTION NMR
Macromolecule	HISTONE H3 (protein)
Unique Ligands	DXX

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1CWZ \| pdb_00001cwz	Download File View File

Solution structure of the analogue retro-inverso (MA-S)REGRIGGC in contact with the monoclonal antibody MAB 4X11, NMR, 7 structures

Phan Chan Du, A., Petit, M.C., Guichard, G., Briand, J.P., Muller, S., Cung, M.T.

(2001) Biochemistry 40: 5720-5727

Released	1999-09-03
Method	SOLUTION NMR
Macromolecule	HISTONE H3 (protein)
Unique Ligands	DXX

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1CZQ \| pdb_00001czq	Download File View File

CRYSTAL STRUCTURE OF THE D10-P1/IQN17 COMPLEX: A D-PEPTIDE INHIBITOR OF HIV-1 ENTRY BOUND TO THE GP41 COILED-COIL POCKET.

Eckert, D.M., Malashkevich, V.N., Hong, L.H., Carr, P.A., Kim, P.S.

(1999) Cell 99: 103-115

Released	1999-10-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Human immunodeficiency virus Saccharomyces cerevisiae
Macromolecule	D-PEPTIDE INHIBITOR (protein) FUSION PROTEIN BETWEEN THE HYDROPHOBIC POCKET OF HIV GP41 AND GCN4-PIQI (protein)
Unique Ligands	CL

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1D0K \| pdb_00001d0k	Download File View File

THE ESCHERICHIA COLI LYTIC TRANSGLYCOSYLASE SLT35 IN COMPLEX WITH TWO MURODIPEPTIDES (GLCNAC-MURNAC-L-ALA-D-GLU)

van Asselt, E.J., Kalk, K.H., Dijkstra, B.W.

(2000) Biochemistry 39: 1924-1934

Released	2000-03-06
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Escherichia coli
Macromolecule	35KD SOLUBLE LYTIC TRANSGLYCOSYLASE (protein)
Unique Ligands	ALA, CA, DGL, GOL
Unique branched monosaccharides	AMU, NAG

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1HBT \| pdb_00001hbt	Download File View File

Human alpha-thrombin complexed with a peptidyl pyridinium methyl ketone containing bivalent inhibitor

Rehse, P.H., Cygler, M.

(1995) Biochemistry 34: 11537-11544

Released	1995-07-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) P596 Inhibitor peptide (protein)

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1KR6 \| pdb_00001kr6	Download File View File

Thermolysin complexed with Z-D-Glutamic acid (benzyloxycarbonyl-D-Glutamic acid)

Senda, M., Senda, T., Kidokoro, S.

To be published

Released	2003-01-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus thermoproteolyticus
Macromolecule	Thermolysin (protein)
Unique Ligands	CA, DGL, PHQ, ZN

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1MCK \| pdb_00001mck	Download File View File

PRINCIPLES AND PITFALLS IN DESIGNING SITE DIRECTED PEPTIDE LIGANDS

Edmundson, A.B., Harris, D.L., Fan, Z.-C., Guddat, L.W.

(1993) Proteins 16: 246-267

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) (protein) PEPTIDE N-ACETYL-D-GLU-L-HIS-D-PRO-NH2 (protein)

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1QUR \| pdb_00001qur	Download File View File

HUMAN ALPHA-THROMBIN IN COMPLEX WITH BIVALENT, BENZAMIDINE-BASED SYNTHETIC INHIBITOR

Renatus, M., Steinmetzer, T.

(1999) Eur J Biochem 265: 598-605

Released	1999-10-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	BIVALENT INHIBITOR (BZA-2 HIRULOG) (protein) HUMAN THROMBIN (ALPHA CHAIN) (protein) HUMAN THROMBIN (BETA CHAIN) (protein)

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1ZUW \| pdb_00001zuw	Download File View File

Crystal structure of B.subtilis glutamate racemase (RacE) with D-Glu

Ruzheinikov, S.N., Taal, M.A., Sedelnikova, S.E., Baker, P.J., Rice, D.W.

(2005) Structure 13: 1707-1713

Released	2005-12-06
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Bacillus subtilis
Macromolecule	glutamate racemase 1 (protein)
Unique Ligands	DGL

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2AIZ \| pdb_00002aiz	Download File View File

Solution structure of peptidoglycan associated lipoprotein from Haemophilus influenza bound to UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

Parsons, L.M., Lin, F., Orban, J., Structure 2 Function Project (S2F)

(2006) Biochemistry 45: 2122-2128

Released	2006-03-14
Method	SOLUTION NMR
Organisms	Haemophilus influenzae synthetic construct
Macromolecule	L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine (protein) Outer membrane protein P6 (Fragment) (protein)
Unique Ligands	AMU, UDP

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2DWU \| pdb_00002dwu	Download File View File

Crystal Structure of Glutamate Racemase Isoform RacE1 from Bacillus anthracis

Mehboob, S., Santarsiero, B.D., Johnson, M.E.

(2007) J Mol Biology 371: 1219-1237

Released	2007-06-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bacillus anthracis
Macromolecule	Glutamate racemase (protein)
Unique Ligands	DGL, GOL, K

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2GZM \| pdb_00002gzm	Download File View File

Crystal Structure of the Glutamate Racemase from Bacillus anthracis

May, M., Santarsiero, B.D., Johnson, M.E., Mesecar, A.D.

(2007) J Mol Biology 371: 1219-1237

Released	2007-05-29
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Bacillus anthracis
Macromolecule	Glutamate racemase (protein)
Unique Ligands	DGL

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2J8F \| pdb_00002j8f	Download File View File

Crystal structure of the modular Cpl-1 endolysin complexed with a peptidoglycan analogue (E94Q mutant in complex with a disaccharide- pentapeptide)

Perez-Dorado, I., Hermoso, J.A.

(2007) J Biological Chem 282: 24990

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Streptococcus phage Cp1
Macromolecule	LYSOZYME (protein)
Unique Ligands	ALA, DGL, FMT
Unique branched monosaccharides	AMV, NAG

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2J8G \| pdb_00002j8g	Download File View File

Crystal structure of the modular Cpl-1 endolysin complexed with a peptidoglycan analogue (E94Q mutant in complex with a tetrasaccharide- pentapeptide)

Perez-Dorado, I., Hermoso, J.A.

(2007) J Biological Chem 282: 24990

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Streptococcus phage Cp1
Macromolecule	LYSOZYME (protein)
Unique Ligands	ALA, DGL, FMT, LYS
Unique branched monosaccharides	AMU, NAG