RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Expression Organism = "Aspergillus niger"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 56 Structures.

Refinements

Structure Determination Methodology

experimental (56)

Scientific Name of Source Organism

	Aspergillus niger (20)
	Trichocladium griseum (5)
	Rasamsonia emersonii (4)
	Trametes cinnabarina (3)
	Trichoderma reesei RUT C-30 (3)
	Bos taurus (2)
	Camelus dromedarius (2)
	Penicillium rubens Wisconsin 54-1255 (2)
	Prunus dulcis (2)
	Trichoderma reesei (2)

More...

Taxonomy

	Eukaryota (56)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (50)
	SOLUTION NMR (6)

Polymer Entity Type

Protein (56)

Refinement Resolution (Å)

	1.0 - 1.5 (8)
	1.5 - 2.0 (23)
	2.0 - 2.5 (10)
	2.5 - 3.0 (7)
	3.0 - 3.5 (2)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (12)
	2005 - 2009 (1)
	2010 - 2014 (16)
	2015 - 2019 (13)
	2020 - 2024 (8)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (37)
	Oxidoreductases (9)
	Lyases (2)

Symmetry Type

	Asymmetric (48)
	Cyclic (4)
	Dihedral (4)

SCOP Classification

	All beta proteins (22)
	Alpha and beta proteins (a/b) (6)
	Alpha and beta proteins (a+b) (3)
	Artifacts (2)
	All alpha proteins (1)

AllSelected

1 to 25 of 56 Structures

Page 1 of 3

Sort by

Explore in 3D

1AC0 \| pdb_00001ac0	Download File View File

GLUCOAMYLASE, GRANULAR STARCH-BINDING DOMAIN COMPLEX WITH CYCLODEXTRIN, NMR, MINIMIZED AVERAGE STRUCTURE

Sorimachi, K., Le Gal-Coeffet, M.-F., Williamson, G., Archer, D.B., Williamson, M.P.

(1997) Structure 5: 647-661

Released	1997-07-07
Method	SOLUTION NMR
Organisms	Aspergillus niger
Macromolecule	GLUCOAMYLASE (protein)
Unique branched monosaccharides	GLC

Explore in 3D

1ACZ \| pdb_00001acz	Download File View File

GLUCOAMYLASE, GRANULAR STARCH-BINDING DOMAIN COMPLEX WITH CYCLODEXTRIN, NMR, 5 STRUCTURES

Sorimachi, K., Le Gal-Coeffet, M.-F., Williamson, G., Archer, D.B., Williamson, M.P.

(1997) Structure 5: 647-661

Released	1997-07-07
Method	SOLUTION NMR
Organisms	Aspergillus niger
Macromolecule	GLUCOAMYLASE (protein)
Unique branched monosaccharides	GLC

Explore in 3D

1E8L \| pdb_00001e8l	Download File View File

NMR solution structure of hen lysozyme

Schwalbe, H., Grimshaw, S.B., Spencer, A., Buck, M., Boyd, J., Dobson, C.M., Redfield, C., Smith, L.J.

(2001) Protein Sci 10: 677-688

Released	2000-10-09
Method	SOLUTION NMR
Organisms	Gallus gallus
Macromolecule	LYSOZYME (protein)

Explore in 3D

1KUL \| pdb_00001kul	Download File View File

GLUCOAMYLASE, GRANULAR STARCH-BINDING DOMAIN, NMR, 5 STRUCTURES

Sorimachi, K., Jacks, A.J., Le Gal-Coeffet, M.-F., Williamson, G., Archer, D.B., Williamson, M.P.

(1996) J Mol Biology 259: 970-987

Released	1996-07-11
Method	SOLUTION NMR
Organisms	Aspergillus niger
Macromolecule	GLUCOAMYLASE (protein)

Explore in 3D

1KUM \| pdb_00001kum	Download File View File

GLUCOAMYLASE, GRANULAR STARCH-BINDING DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE

Sorimachi, K., Jacks, A.J., Le Gal-Coeffet, M.-F., Williamson, G., Archer, D.B., Williamson, M.P.

(1996) J Mol Biology 259: 970-987

Released	1996-07-11
Method	SOLUTION NMR
Organisms	Aspergillus niger
Macromolecule	GLUCOAMYLASE (protein)

Explore in 3D

1NHC \| pdb_00001nhc	Download File View File

Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger

van Pouderoyen, G., Snijder, H.J., Benen, J.A., Dijkstra, B.W.

(2003) FEBS Lett 554: 462-466

Released	2003-11-25
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Aspergillus niger
Macromolecule	Polygalacturonase I (protein)
Unique Ligands	GOL, MAN, NAG, SO4
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

1OA2 \| pdb_00001oa2	Download File View File

Comparison of Family 12 Glycoside Hydrolases and Recruited Substitutions Important for Thermal Stability

Sandgren, M., Gualfetti, P.J., Shaw, A., Gross, L.S., Saldajeno, M., Day, A.G., Jones, T.A., Mitchinson, C.

(2003) Protein Sci 12: 848

Released	2003-03-27
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Trichoderma reesei
Macromolecule	ENDO-BETA-1,4-GLUCANASE (protein)
Unique Ligands	NAG

Explore in 3D

1OA3 \| pdb_00001oa3	Download File View File

Comparison of Family 12 Glycoside Hydrolases and Recruited Substitutions Important for Thermal Stability

Sandgren, M., Gualfetti, P.J., Shaw, A., Gross, L.S., Saldajeno, M., Day, A.G., Jones, T.A., Mitchinson, C.

(2003) Protein Sci 12: 848

Released	2003-03-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Trichoderma citrinoviride
Macromolecule	ENDO-BETA-1-4-GLUCANASE (protein)
Unique Ligands	NAG

Explore in 3D

1OLQ \| pdb_00001olq	Download File View File

The Trichoderma reesei cel12a P201C mutant, structure at 1.7 A resolution

Sandgren, M., Gualfetti, P.J., Shaw, A., Gross, L.S., Saldajeno, M., Berglund, G.I., Jones, T.A., Mitchinson, C.

(2003) Protein Sci 12: 2782

Released	2003-11-25
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Trichoderma reesei
Macromolecule	ENDO-BETA-1,4-GLUCANASE (protein)
Unique Ligands	NAG

Explore in 3D

1OLR \| pdb_00001olr	Download File View File

The Humicola grisea Cel12A Enzyme Structure at 1.2 A Resolution

Sandgren, M., Gualfetti, P.J., Shaw, A., Gross, L.S., Saldajeno, M., Berglund, G.I., Jones, T.A., Mitchinson, C.

(2003) Protein Sci 12: 2782

Released	2003-11-25
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Trichocladium griseum
Macromolecule	ENDO-BETA-1,4-GLUCANASE (protein)

Explore in 3D

1OP9 \| pdb_00001op9	Download File View File

Complex of human lysozyme with camelid VHH HL6 antibody fragment

Dumoulin, M., Last, A.M., Desmyter, A., Decanniere, K., Canet, D., Larsson, G., Spencer, A., Archer, D.B., Sasse, J., Muyldermans, S., Wyns, L., Redfield, C., Matagne, A., Robinson, C.V., Dobson, C.M.

(2003) Nature 424: 783-788

Released	2003-10-14
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Camelus dromedarius Homo sapiens
Macromolecule	HL6 camel VHH fragment (protein) Lysozyme C (protein)

Explore in 3D

1UKC \| pdb_00001ukc	Download File View File

Crystal Structure of Aspergillus niger EstA

Bourne, Y., Hasper, A.A., Chahinian, H., Juin, M., De Graaff, L.H., Marchot, P.

(2004) Structure 12: 677-687

Released	2004-07-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Aspergillus niger
Macromolecule	EstA (protein)
Unique Ligands	CL, EDO, MAN, NAG, SO4
Unique branched monosaccharides	MAN, NAG

Explore in 3D

1UU4 \| pdb_00001uu4	Download File View File

X-RAY CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMICOLA GRISEA CEL12A IN COMPLEX WITH CELLOBIOSE

Berglund, G.I., Shaw, A., Stahlberg, J., Kenne, L., Driguez, T.H., Mitchinson, C., Sandgren, M.

(2004) J Mol Biology 342: 1505

Released	2004-09-16
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Trichocladium griseum
Macromolecule	ENDO-BETA-1,4-GLUCANASE (protein)
Unique Ligands	PG4
Unique branched monosaccharides	BGC

Explore in 3D

1UU5 \| pdb_00001uu5	Download File View File

X-RAY CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMICOLA GRISEA CEL12A SOAKED WITH CELLOTETRAOSE

Berglund, G.I., Shaw, A., Stahlberg, J., Kenne, L., Driguez, T.H., Mitchinson, C., Sandgren, M.

(2004) J Mol Biology 342: 1505

Released	2004-09-16
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Trichocladium griseum
Macromolecule	ENDO-BETA-1,4-GLUCANASE (protein)
Unique Ligands	ACT
Unique branched monosaccharides	BGC

Explore in 3D

1UU6 \| pdb_00001uu6	Download File View File

X-RAY CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMICOLA GRISEA CEL12A IN COMPLEX WITH A SOAKED CELLOPENTAOSE

Berglund, G.I., Shaw, A., Stahlberg, J., Kenne, L., Driguez, T.H., Mitchinson, C., Sandgren, M.

(2004) J Mol Biology 342: 1505

Released	2004-09-16
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Trichocladium griseum
Macromolecule	ENDO-BETA-1,4-GLUCANASE (protein)
Unique Ligands	PG4
Unique branched monosaccharides	BGC

Explore in 3D

1W2U \| pdb_00001w2u	Download File View File

X-RAY CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMICOLA GRISEA CEL12A IN COMPLEX WITH A SOAKED THIO CELLOTETRAOSE

Berglund, G.I., Shaw, A., Stahlberg, J., Kenne, L., Driguez, T.H., Mitchinson, C., Sandgren, M.

(2004) J Mol Biology 342: 1505

Released	2004-09-16
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Trichocladium griseum
Macromolecule	ENDOGLUCANASE (protein)
Unique Ligands	PG4, SO4
Unique branched monosaccharides	BGC

Explore in 3D

2HL6 \| pdb_00002hl6	Download File View File

Structure of homologously expressed Ferrulate esterase of Aspergillus niger in complex with CAPS

Parsiegla, G., Herpoel-Gimbert, I., Dubots, J.

(2006) FEBS Lett 580: 5815-5821

Released	2006-10-31
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Aspergillus niger
Macromolecule	Feruloyl esterase A (protein)
Unique Ligands	CXS, EDO, SO4
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

2LI5 \| pdb_00002li5	Download File View File

NMR structure of Atg8-Atg7C30 complex

Kumeta, H., Satoo, K., Noda, N.N., Fujioka, Y., Ogura, K., Nakatogawa, H., Ohsumi, Y., Inagaki, F.

(2011) Mol Cell 44: 462-475

Released	2011-11-16
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Autophagy-related protein 8 (protein) Ubiquitin-like modifier-activating enzyme ATG7 (protein)

Explore in 3D

3K4P \| pdb_00003k4p	Download File View File

Aspergillus niger Phytase

Oakley, A.J.

(2010) Biochem Biophys Res Commun 397: 745-749

Released	2010-06-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Aspergillus niger
Macromolecule	3-phytase A (protein)
Unique Ligands	NAG

Explore in 3D

3K4Q \| pdb_00003k4q	Download File View File

Aspergillus niger Phytase in complex with myo-inositol hexakis sulfate

Oakley, A.J.

(2010) Biochem Biophys Res Commun 397: 745-749

Released	2010-06-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Aspergillus niger
Macromolecule	3-phytase A (protein)
Unique Ligands	IHS, NAG

Explore in 3D

3PFJ \| pdb_00003pfj	Download File View File

Crystal structure of Cel7A from Talaromyces emersonii

Qin, L., Pereira, J.H., McAndrew, R.P., Simmons, B.A., Sapra, R., Adams, P.D., Sale, K.L.

Released	2011-11-02
Method	X-RAY DIFFRACTION 1.3611 Å
Organisms	Rasamsonia emersonii
Macromolecule	Cellobiohydrolase 1 catalytic domain (protein)
Unique Ligands	SO4
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

3PFX \| pdb_00003pfx	Download File View File

Crystal structure of Cel7A from Talaromyces emersonii in complex with cellobiose

Qin, L., Pereira, J.H., McAndrew, R.P., Simmons, B.A., Sapra, R., Adams, P.D., Sale, K.L.

To be published

Released	2011-11-02
Method	X-RAY DIFFRACTION 1.2616 Å
Organisms	Rasamsonia emersonii
Macromolecule	Cellobiohydrolase 1 catalytic domain (protein)
Unique Ligands	SO4
Unique branched monosaccharides	BGC, BMA, MAN, NAG

Explore in 3D

3PFZ \| pdb_00003pfz	Download File View File

Crystal structure of Cel7A from Talaromyces emersonii in complex with cellotetraose

Qin, L., Pereira, J.H., McAndrew, R.P., Simmons, B.A., Sapra, R., Adams, P.D., Sale, K.L.

To be published

Released	2011-11-02
Method	X-RAY DIFFRACTION 1.0993 Å
Organisms	Rasamsonia emersonii
Macromolecule	Cellobiohydrolase 1 catalytic domain (protein)
Unique Ligands	NAG, SO4
Unique branched monosaccharides	BGC, BMA, MAN, NAG

Explore in 3D

3PGB \| pdb_00003pgb	Download File View File

Crystal structure of Aspergillus nidulans amine oxidase

McGrath, A.P., Guss, J.M.

(2011) Biochemistry 50: 5718-5730

Released	2011-07-13
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Aspergillus nidulans
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	CA, CU, NAG
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

3PL3 \| pdb_00003pl3	Download File View File

Crystal structure of Cel7A from Talaromyces emersonii in complex with cellopentaose

Qin, L., Pereira, J.H., McAndrew, R.P., Simmons, B.A., Sapra, R., Adams, P.D., Sale, K.L.

Released	2011-12-14
Method	X-RAY DIFFRACTION 1.1804 Å
Organisms	Rasamsonia emersonii
Macromolecule	Cellobiohydrolase 1 catalytic domain (protein)
Unique Ligands	SO4
Unique branched monosaccharides	BGC, BMA, NAG

1 to 25 of 56 Structures

Page 1 of 3

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1AC0 | pdb_00001ac0

1ACZ | pdb_00001acz

1E8L | pdb_00001e8l

1KUL | pdb_00001kul

1KUM | pdb_00001kum

1NHC | pdb_00001nhc

1OA2 | pdb_00001oa2

1OA3 | pdb_00001oa3

1OLQ | pdb_00001olq

1OLR | pdb_00001olr

1OP9 | pdb_00001op9

1UKC | pdb_00001ukc

1UU4 | pdb_00001uu4

1UU5 | pdb_00001uu5

1UU6 | pdb_00001uu6

1W2U | pdb_00001w2u

2HL6 | pdb_00002hl6

2LI5 | pdb_00002li5

3K4P | pdb_00003k4p

3K4Q | pdb_00003k4q

3PFJ | pdb_00003pfj

3PFX | pdb_00003pfx

3PFZ | pdb_00003pfz

3PGB | pdb_00003pgb

3PL3 | pdb_00003pl3