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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "VgrG1"

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Vibrio cholerae (7)
	Pseudomonas aeruginosa PAO1 (3)
	Escherichia coli O157:H7 (1)
	Vibrio cholerae O1 biovar El Tor str. N16961 (1)

Taxonomy

Bacteria (12)

Experimental Method

	X-RAY DIFFRACTION (10)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (6)
	2.5 - 3.0 (1)
	3.0 - 3.5 (2)
	4.0 - 4.5 (1)

Release Date

	2010 - 2014 (10)
	2015 - 2019 (2)

Enzyme Classification Name

Ligases (8)

Symmetry Type

	Cyclic (8)
	Asymmetric (8)

AllSelected

1 to 12 of 12 Structures

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3WIT \| pdb_00003wit	Download File View File

Crystal structure of the C-terminal region of VgrG1 from E. coli O157 EDL933

Uchida, K., Leiman, P.G., Arisaka, F., Kanamaru, S.

(2014) J Biochem 155: 173-182

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Putative Vgr protein (protein)

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4DTD \| pdb_00004dtd	Download File View File

Structure and functional characterization of a Vibrio cholerae toxin from the MARTX/VgrG family.

Durand, E., Audoly, G., Derrez, E., Spinelli, S., Ortiz-Lombardia, M., Cascales, E., Raoult, D., Cambillau, C.

(2012) J Biological Chem

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Vibrio cholerae
Macromolecule	VgrG protein (protein)
Unique Ligands	GOL

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4DTF \| pdb_00004dtf	Download File View File

Structure of a VgrG Vibrio cholerae toxin ACD domain in complex with AMP-PNP and Mg++

Durand, E., Audoly, G., Derrez, E., Spinelli, S., Ortiz-Lombardia, M., Cascales, E., Raoult, D., Cambillau, C.

(2012) J Biological Chem

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Vibrio cholerae
Macromolecule	VgrG protein (protein)
Unique Ligands	ANP, GOL, MG, SO4

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4DTH \| pdb_00004dth	Download File View File

Structure of a VgrG Vibrio cholerae toxin ACD domain in complex with ATP and Mg++

Durand, E., Audoly, G., Derrez, E., Spinelli, S., Ortiz-Lombardia, M., Cascales, E., Raoult, D., Cambillau, C.

(2012) J Biological Chem

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Vibrio cholerae
Macromolecule	VgrG protein (protein)
Unique Ligands	ATP, GOL, MG, SO4

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4DTL \| pdb_00004dtl	Download File View File

Structure of a VgrG Vibrio cholerae toxin ACD domain in complex with ATP and Mn++

Durand, E., Audoly, G., Derrez, E., Spinelli, S., Ortiz-Lombardia, M., Cascales, E., Raoult, D., Cambillau, C.

(2012) J Biological Chem

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Vibrio cholerae
Macromolecule	VgrG protein (protein)
Unique Ligands	ATP, GOL, MN, SO4

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4E1C \| pdb_00004e1c	Download File View File

Structure of a VgrG Vibrio cholerae toxin ACD domain in complex with ADP and Mg++

Durand, E., Audoly, G., Derrez, E., Spinelli, S., Ortiz-Lombardia, M., Cascales, E., Raoult, D., Cambillau, C.

(2012) J Biological Chem

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Vibrio cholerae
Macromolecule	VgrG protein (protein)
Unique Ligands	ADP, GOL, MG, SO4

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4E1D \| pdb_00004e1d	Download File View File

Structure of a VgrG Vibrio cholerae toxin ACD domain in complex with ADP and Mn++

Durand, E., Audoly, G., Derrez, E., Spinelli, S., Ortiz-Lombardia, M., Cascales, E., Raoult, D., Cambillau, C.

(2012) J Biological Chem

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Vibrio cholerae
Macromolecule	VgrG protein (protein)
Unique Ligands	ADP, MN, SO4

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4E1F \| pdb_00004e1f	Download File View File

Structure of a VgrG Vibrio cholerae toxin ACD domain Glu16Gln mutant in complex with ADP and Mn++

Durand, E., Audoly, G., Derrez, E., Spinelli, S., Ortiz-Lombardia, M., Cascales, E., Raoult, D., Cambillau, C.

(2012) J Biological Chem

Released	2012-10-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Vibrio cholerae
Macromolecule	VgrG protein (protein)
Unique Ligands	ADP, MN, SO4

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4GQK \| pdb_00004gqk	Download File View File

Structure of Native VgrG1-ACD with ADP (no cations)

Nguyen, V.S., Spinelli, S., Derrez, E., Durand, E., Cambillau, C.

To be published

Released	2013-09-25
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Vibrio cholerae O1 biovar El Tor str. N16961
Macromolecule	VgrG protein (protein)
Unique Ligands	ADP, SO4

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4MTK \| pdb_00004mtk	Download File View File

Crystal structure of PA0091 VgrG1, the central spike of the Type VI Secretion System

Sycheva, L.V., Shneider, M.M., Leiman, P.G.

To be published

Released	2014-10-01
Method	X-RAY DIFFRACTION 3.322 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	VgrG1 (protein)
Unique Ligands	SO4, TAM

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6H3L \| pdb_00006h3l	Download File View File

Structure of VgrG1 in the Type VI secretion "pre-firing" VgrG1-Tse6-EagT6-EF-Tu-Tsi6 complex

Quentin, D., Raunser, S.

(2018) Nat Microbiol 3: 1142-1152

Released	2018-09-12
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	VgrG1 (protein)

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6H3N \| pdb_00006h3n	Download File View File

Structure of VgrG1 in the Type VI secretion VgrG1-Tse6-EF-Tu complex embedded in lipid nanodiscs

Quentin, D., Raunser, S.

(2018) Nat Microbiol 3: 1142-1152

Released	2018-09-12
Method	ELECTRON MICROSCOPY 3.25 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	VgrG1 (protein)

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3WIT | pdb_00003wit

Crystal structure of the C-terminal region of VgrG1 from E. coli O157 EDL933

4DTD | pdb_00004dtd

Structure and functional characterization of a Vibrio cholerae toxin from the MARTX/VgrG family.

4DTF | pdb_00004dtf

Structure of a VgrG Vibrio cholerae toxin ACD domain in complex with AMP-PNP and Mg++

4DTH | pdb_00004dth

Structure of a VgrG Vibrio cholerae toxin ACD domain in complex with ATP and Mg++

4DTL | pdb_00004dtl

Structure of a VgrG Vibrio cholerae toxin ACD domain in complex with ATP and Mn++

4E1C | pdb_00004e1c

Structure of a VgrG Vibrio cholerae toxin ACD domain in complex with ADP and Mg++

4E1D | pdb_00004e1d

Structure of a VgrG Vibrio cholerae toxin ACD domain in complex with ADP and Mn++

4E1F | pdb_00004e1f

Structure of a VgrG Vibrio cholerae toxin ACD domain Glu16Gln mutant in complex with ADP and Mn++

4GQK | pdb_00004gqk

Structure of Native VgrG1-ACD with ADP (no cations)

4MTK | pdb_00004mtk

Crystal structure of PA0091 VgrG1, the central spike of the Type VI Secretion System

6H3L | pdb_00006h3l

Structure of VgrG1 in the Type VI secretion "pre-firing" VgrG1-Tse6-EagT6-EF-Tu-Tsi6 complex

6H3N | pdb_00006h3n

Structure of VgrG1 in the Type VI secretion VgrG1-Tse6-EF-Tu complex embedded in lipid nanodiscs

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

3WIT | pdb_00003wit

4DTD | pdb_00004dtd

4DTF | pdb_00004dtf

4DTH | pdb_00004dth

4DTL | pdb_00004dtl

4E1C | pdb_00004e1c

4E1D | pdb_00004e1d

4E1F | pdb_00004e1f

4GQK | pdb_00004gqk

4MTK | pdb_00004mtk

6H3L | pdb_00006h3l

6H3N | pdb_00006h3n