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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "nadD"

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Search Summary

This query matches 31 Structures.

Refinements

Structure Determination Methodology

experimental (31)

Scientific Name of Source Organism

	Bacillus anthracis (9)
	Mycobacterium tuberculosis H37Rv (5)
	Mycobacteroides abscessus ATCC 19977 (4)
	Enterococcus faecium (3)
	Bacillus subtilis (2)
	Escherichia coli (2)
	Escherichia coli NCCP15648 (2)
	Staphylococcus aureus (2)
	Burkholderia thailandensis E264 (1)
	Mycobacterium tuberculosis (1)

Taxonomy

Bacteria (31)

Experimental Method

X-RAY DIFFRACTION (31)

Polymer Entity Type

Protein (31)

Refinement Resolution (Å)

	1.5 - 2.0 (12)
	2.0 - 2.5 (15)
	2.5 - 3.0 (1)
	3.0 - 3.5 (3)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (8)
	2010 - 2014 (4)
	2015 - 2019 (10)
	2020 - 2024 (5)

Enzyme Classification Name

Transferases (30)

Symmetry Type

	Cyclic (25)
	Asymmetric (5)
	Dihedral (7)

SCOP Classification

	Alpha and beta proteins (a/b) (28)
	Artifacts (5)

AllSelected

1 to 25 of 31 Structures

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1K4K \| pdb_00001k4k	Download File View File

Crystal structure of E. coli Nicotinic acid mononucleotide adenylyltransferase

Zhang, H., Zhou, T., Kurnasov, O., Cheek, S., Grishin, N.V., Osterman, A.L.

(2002) Structure 10: 69-79

Released	2002-10-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Nicotinic acid mononucleotide adenylyltransferase (protein)
Unique Ligands	XE

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1K4M \| pdb_00001k4m	Download File View File

Crystal structure of E.coli nicotinic acid mononucleotide adenylyltransferase complexed to deamido-NAD

Zhang, H., Zhou, T., Kurnasov, O., Cheek, S., Grishin, N.V., Osterman, A.

(2002) Structure 10: 69-79

Released	2002-10-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	NaMN adenylyltransferase (protein)
Unique Ligands	CIT, NAD

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1KAM \| pdb_00001kam	Download File View File

Structure of Bacillus subtilis Nicotinic Acid Mononucleotide Adenylyl Transferase

Olland, A.M., Underwood, K.W., Czerwinski, R.M., Lo, M.C., Aulabaugh, A., Bard, J., Stahl, M.L., Somers, W.S., Sullivan, F.X., Chopra, R.

(2002) J Biological Chem 277: 3698-3707

Released	2002-07-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacillus subtilis
Macromolecule	NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE (protein)

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1KAQ \| pdb_00001kaq	Download File View File

Structure of Bacillus subtilis Nicotinic Acid Mononucleotide Adenylyl Transferase

Olland, A.M., Underwood, K.W., Czerwinski, R.M., Lo, M.C., Aulabaugh, A., Bard, J., Stahl, M.L., Somers, W.S., Sullivan, F.X., Chopra, R.

(2002) J Biological Chem 277: 3698-3707

Released	2002-07-12
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Bacillus subtilis
Macromolecule	NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE (protein)
Unique Ligands	DND

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2H29 \| pdb_00002h29	Download File View File

Crystal structure of Nicotinic acid mononucleotide Adenylyltransferase from Staphylococcus aureus: product bound form 1

Han, S.

(2006) J Mol Biology 360: 814-825

Released	2006-08-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Staphylococcus aureus
Macromolecule	Probable nicotinate-nucleotide adenylyltransferase (protein)
Unique Ligands	DND

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2H2A \| pdb_00002h2a	Download File View File

Crystal structure of Nicotinic acid mononucleotide adenylyltransferase from Staphylococcus aureus: product bound form 2

Han, S.

(2006) J Mol Biology 360: 814-825

Released	2006-08-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Staphylococcus aureus
Macromolecule	Probable nicotinate-nucleotide adenylyltransferase (protein)
Unique Ligands	CA, DND, GOL

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2QTM \| pdb_00002qtm	Download File View File

Crystal Structure of Nicotinate Mononucleotide Adenylyltransferase

Sershon, V.C., Santarsiero, B.D., Mesecar, A.D.

(2009) J Mol Biology 385: 867-888

Released	2008-07-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacillus anthracis
Macromolecule	Nicotinate (Nicotinamide) nucleotide adenylyltransferase (protein)
Unique Ligands	CO, GOL

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2QTN \| pdb_00002qtn	Download File View File

Crystal Structure of Nicotinate Mononucleotide Adenylyltransferase

Sershon, V.C., Santarsiero, B.D., Mesecar, A.D.

(2009) J Mol Biology 385: 867-888

Released	2008-07-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacillus anthracis
Macromolecule	Nicotinate (Nicotinamide) nucleotide adenylyltransferase (protein)
Unique Ligands	GOL, MG, NCN

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2QTR \| pdb_00002qtr	Download File View File

Crystal Structure of Nicotinate Mononucleotide Adenylyltransferase

Sershon, V.C., Santarsiero, B.D., Mesecar, A.D.

(2009) J Mol Biology 385: 867-888

Released	2008-07-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus anthracis
Macromolecule	Probable nicotinate-nucleotide adenylyltransferase (protein)
Unique Ligands	DND, SO4

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3DV2 \| pdb_00003dv2	Download File View File

Crystal Structure of nicotinic acid mononucleotide adenylyltransferase from Bacillus anthracis

Lu, S., Smith, C.D., Yang, Z., Pruett, P.S., Nagy, L., McCombs, D.P., DeLucas, L.J., Brouillette, W.J., Brouillette, C.G.

(2008) Acta Crystallogr Sect F Struct Biol Cryst Commun 64: 893-898

Released	2008-11-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus anthracis
Macromolecule	Nicotinate (Nicotinamide) nucleotide adenylyltransferase (protein)
Unique Ligands	SO4

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3E27 \| pdb_00003e27	Download File View File

Nicotinic acid mononucleotide (NaMN) adenylyltransferase from Bacillus anthracis: product complex

Martynowski, D., Eyobo, Y., Zhang, H.

(2009) Chem Biol 16: 849-861

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus anthracis
Macromolecule	Nicotinate (Nicotinamide) nucleotide adenylyltransferase (protein)
Unique Ligands	DND, MG

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3HFJ \| pdb_00003hfj	Download File View File

Bacillus anthracis nicotinate mononucleotide adenylytransferase (nadD) in complex with inhibitor CID 3289443

Zhang, H., Huang, N., Eyobo, Y.

(2009) Chem Biol 16: 849-861

Released	2009-09-08
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Bacillus anthracis
Macromolecule	Nicotinate (Nicotinamide) nucleotide adenylyltransferase (protein)
Unique Ligands	CA, DZ9

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3MLA \| pdb_00003mla	Download File View File

BaNadD in complex with inhibitor 1_02

Huang, N., Eyobo, Y., Zhang, H.

(2010) J Med Chem 53: 5229-5239

Released	2010-07-28
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Bacillus anthracis
Macromolecule	nicotinate-nucleotide adenylyltransferase (protein)
Unique Ligands	DMS, FMT, JJZ

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3MLB \| pdb_00003mlb	Download File View File

BaNadD in complex with inhibitor 1_02_1

Huang, N., Zhang, H., Eyobo, Y.

(2010) J Med Chem 53: 5229-5239

Released	2010-07-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus anthracis
Macromolecule	nicotinate-nucleotide adenylyltransferase (protein)
Unique Ligands	FMT, K, LJZ

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3MMX \| pdb_00003mmx	Download File View File

Bacillus anthracis NadD (baNadD) in complex with compound 1_02_3

Huang, N., Zhang, H.

(2010) J Med Chem 53: 5229-5239

Released	2010-07-28
Method	X-RAY DIFFRACTION 2.552 Å
Organisms	Bacillus anthracis
Macromolecule	nicotinate-nucleotide adenylyltransferase (protein)
Unique Ligands	CIT, DMS, K, KJZ

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4RPI \| pdb_00004rpi	Download File View File

Crystal Structure of Nicotinate Mononucleotide Adenylyltransferase from Mycobacterium tuberculosis

Rodionova, I., Zuccola, H., Sorci, L., Aleshin, A.E., Kazanov, M., Sergienko, E., Rubin, E., Locher, C., Osterman, A.

(2015) J Biological Chem 290: 7693-7706

Released	2015-01-28
Method	X-RAY DIFFRACTION 2.417 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	nicotinate-nucleotide adenylyltransferase (protein)
Unique Ligands	DMS, EPE

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4S1O \| pdb_00004s1o	Download File View File

Structure of Mycobacterium tuberculosis NadD in complex with NADP

Korotkov, K.V.

To be published

Released	2016-01-20
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Probable nicotinate-nucleotide adenylyltransferase (protein)
Unique Ligands	CL, NAP

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4WSO \| pdb_00004wso	Download File View File

X-ray crystal structure of a nicotinate nucleotide adenylyltransferase from Burkholderia thailandensis bound to NAD

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Burkholderia thailandensis E264
Macromolecule	Probable nicotinate-nucleotide adenylyltransferase (protein)
Unique Ligands	NAD, PO4

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4X0E \| pdb_00004x0e	Download File View File

Structure of M. tuberculosis nicotinate mono nucleotide adenylyltransferase

Zuccola, H.J., Ostermna, A.L.

(2015) J Biological Chem 290: 7693-7706

Released	2015-01-28
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Probable nicotinate-nucleotide adenylyltransferase (protein)
Unique Ligands	MES, SO4

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4YBR \| pdb_00004ybr	Download File View File

Structure of Mycobacterium tuberculosis NadD in complex with NADP, P21212

Korotkov, K.V.

To be published

Released	2016-02-03
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Nicotinate-nucleotide adenylyltransferase (protein)
Unique Ligands	CL, EPE, NAP, SO4

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4YMI \| pdb_00004ymi	Download File View File

Crystal structure of probable nicotinate-nucleotide adenylyltransferase from Mycobacterium abcessus in complex with NADP

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2016-03-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mycobacteroides abscessus ATCC 19977
Macromolecule	Probable nicotinate-nucleotide adenylyltransferase (protein)
Unique Ligands	ADE, NAP

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5DAS \| pdb_00005das	Download File View File

Structure of Mycobacterium tuberculosis NadD in complex with NADP, P21212, form 2

Korotkov, K.V.

To be published

Released	2016-08-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Nicotinate-nucleotide adenylyltransferase (protein)
Unique Ligands	NAP

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5DB4 \| pdb_00005db4	Download File View File

Mycobacterium abscessus NadD in complex with Mg-ATP, space group I41

Reed, R.W., Korotkov, K.V., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2016-08-24
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Mycobacteroides abscessus ATCC 19977
Macromolecule	Nicotinate-nucleotide adenylyltransferase (protein)
Unique Ligands	ATP, MG

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5DEO \| pdb_00005deo	Download File View File

Mycobacterium abscessus NadD in complex with nicotinic acid adenine dinucleotide

Reed, R.W., Korotkov, K.V., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2016-08-24
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Mycobacteroides abscessus ATCC 19977
Macromolecule	Nicotinate-nucleotide adenylyltransferase (protein)
Unique Ligands	DND

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5VIR \| pdb_00005vir	Download File View File

Crystal structure of probable nicotinate-nucleotide adenylyltransferase from Mycobacterium abscessus in complex with NADP and compound FOL0091

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2017-04-26
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mycobacteroides abscessus ATCC 19977
Macromolecule	Probable nicotinate-nucleotide adenylyltransferase (protein)
Unique Ligands	9CG, NAP

1 to 25 of 31 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1K4K | pdb_00001k4k

1K4M | pdb_00001k4m

1KAM | pdb_00001kam

1KAQ | pdb_00001kaq

2H29 | pdb_00002h29

2H2A | pdb_00002h2a

2QTM | pdb_00002qtm

2QTN | pdb_00002qtn

2QTR | pdb_00002qtr

3DV2 | pdb_00003dv2

3E27 | pdb_00003e27

3HFJ | pdb_00003hfj

3MLA | pdb_00003mla

3MLB | pdb_00003mlb

3MMX | pdb_00003mmx

4RPI | pdb_00004rpi

4S1O | pdb_00004s1o

4WSO | pdb_00004wso

4X0E | pdb_00004x0e

4YBR | pdb_00004ybr

4YMI | pdb_00004ymi

5DAS | pdb_00005das

5DB4 | pdb_00005db4

5DEO | pdb_00005deo

5VIR | pdb_00005vir