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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "TRANSCRIPTION"

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Search Summary

This query matches 9,066 Structures.

Refinements

Structure Determination Methodology

experimental (9,066)

Scientific Name of Source Organism

	Homo sapiens (4,597)
	synthetic construct (893)
	Escherichia coli (502)
	Mus musculus (454)
	Saccharomyces cerevisiae (351)
	Escherichia coli K-12 (260)
	Saccharomyces cerevisiae S288C (208)
	Bacillus subtilis (146)
	Mycobacterium tuberculosis (114)
	Mycobacterium tuberculosis H37Rv (112)

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Taxonomy

	Eukaryota (5,988)
	Bacteria (2,732)
	other sequences (896)
	Duplodnaviria (148)
	Eukaryota (eukaryotes) (147)
	Riboviria (125)
	Archaea (120)
	Varidnaviria (45)
	unclassified sequences (24)
	Monodnaviria (19)

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Experimental Method

	X-RAY DIFFRACTION (7,227)
	SOLUTION NMR (929)
	ELECTRON MICROSCOPY (910)
	SOLUTION SCATTERING (4)
	NEUTRON DIFFRACTION (1)

Polymer Entity Type

	Protein (9,063)
	DNA (1,961)
	RNA (651)
	NA-hybrid (6)

Refinement Resolution (Å)

	0.5 - 1.0 (9)
	1.0 - 1.5 (529)
	1.5 - 2.0 (2,245)
	2.0 - 2.5 (2,295)
	2.5 - 3.0 (1,513)
	3.0 - 3.5 (815)
	3.5 - 4.0 (362)
	4.0 - 4.5 (193)
	> 4.5 (177)

Release Date

	1990 - 1994 (42)
	1995 - 1999 (199)
	2000 - 2004 (516)
	2005 - 2009 (1,569)
	2010 - 2014 (1,775)
	2015 - 2019 (2,471)
	2020 - 2024 (2,412)
	2025 - 2029 (82)

Enzyme Classification Name

	Transferases (1,677)
	Hydrolases (497)
	Isomerases (77)
	Oxidoreductases (69)
	Lyases (34)
	Ligases (41)

Membrane Protein Annotation

	PDBTM (3)
	MemProtMD (2)
	OPM (2)
	mpstruc (1)

Symmetry Type

	Asymmetric (5,857)
	Cyclic (3,288)
	Dihedral (230)
	Helical (23)
	Tetrahedral (4)

SCOP Classification

	All alpha proteins (2,221)
	Artifacts (1,030)
	All beta proteins (608)
	Alpha and beta proteins (a+b) (509)
	Alpha and beta proteins (a/b) (358)
	Small proteins (301)
	Low resolution protein structures (17)
	Coiled coil proteins (62)
	Multi-domain proteins (alpha and beta) (58)
	Peptides (29)

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AllSelected

1 to 25 of 9,066 Structures

Page 1 of 363

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1B9M \| pdb_00001b9m	Download File View File

REGULATOR FROM ESCHERICHIA COLI

Hall, D.R., Gourley, D.G., Hunter, W.N.

(1999) EMBO J 18: 1435-1436

Released	2000-03-15
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (MODE) (protein)
Unique Ligands	NI

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1B9N \| pdb_00001b9n	Download File View File

REGULATOR FROM ESCHERICHIA COLI

Hall, D.R., Gourley, D.G., Hunter, W.N.

(1999) EMBO J 18: 1435-1446

Released	2000-03-15
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (MODE) (protein)
Unique Ligands	NI

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1C9O \| pdb_00001c9o	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF THE BACILLUS CALDOLYTICUS COLD SHOCK PROTEIN BC-CSP

Mueller, U., Perl, D., Schmid, F.X., Heinemann, U.

(2000) J Mol Biology 297: 975-988

Released	2000-04-02
Method	X-RAY DIFFRACTION 1.17 Å
Organisms	[Bacillus] caldolyticus
Macromolecule	COLD-SHOCK PROTEIN (protein)
Unique Ligands	NA, TRS

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1CI6 \| pdb_00001ci6	Download File View File

TRANSCRIPTION FACTOR ATF4-C/EBP BETA BZIP HETERODIMER

Podust, L.M., Kim, Y.

(2001) J Biological Chem 276: 505-513

Released	2000-12-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	TRANSCRIPTION FACTOR ATF-4 (protein) TRANSCRIPTION FACTOR C/EBP BETA (protein)
Unique Ligands	BME, FE

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1CMO \| pdb_00001cmo	Download File View File

IMMUNOGLOBULIN MOTIF DNA-RECOGNITION AND HETERODIMERIZATION FOR THE PEBP2/CBF RUNT-DOMAIN

Nagata, T., Gupta, V., Sorce, D., Kim, W.Y., Sali, A., Chait, B.T., Shigesada, K., Ito, Y., Werner, M.H.

(1999) Nat Struct Biol 6: 615-618

Released	2000-01-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	POLYOMAVIRUS ENHANCER BINDING PROTEIN 2 (protein)

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1CO0 \| pdb_00001co0	Download File View File

NMR STUDY OF TRP REPRESSOR-MTR OPERATOR DNA COMPLEX

Zhou, G.P., Brocchieri, L., Jardetzky, O.

(2002) Structures And Mechanisms, Acs Symposium Series 827: 340-366

Released	2003-09-16
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	TRP OPERON REPRESSOR (protein) 5'-D(TPGPTPAPCPCPAPGPTPAPCPAPCPGPAPGPTPAPCPA)-3' (nucleic acid) 5'-D(TPGPTPAPCPTPCPGPTPGPTPAPCPTPGPGPTPAPCPA)-3' (nucleic acid)
Unique Ligands	TRP

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1CS3 \| pdb_00001cs3	Download File View File

STRUCTURE OF BTB/POZ TRANSCRIPTION REPRESSION DOMAIN FROM PROMELOCYTIC LEUKEMIA ZINC FINGER ONCOPROTEIN

Li, X., Rauscher III, F.J., Marmorstein, R.

(1999) Cancer Res 59: 5275-5282

Released	1999-08-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ZINC FINGER PROTEIN PLZF (protein)
Unique Ligands	GOL, MG

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1DBW \| pdb_00001dbw	Download File View File

CRYSTAL STRUCTURE OF FIXJ-N

Gouet, P., Fabry, B., Guillet, V., Birck, C., Mourey, L., Kahn, D., Samama, J.P.

(1999) Structure 7: 1517-1526

Released	1999-11-26
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Sinorhizobium meliloti
Macromolecule	TRANSCRIPTIONAL REGULATORY PROTEIN FIXJ (protein)
Unique Ligands	15P

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1DCK \| pdb_00001dck	Download File View File

STRUCTURE OF UNPHOSPHORYLATED FIXJ-N COMPLEXED WITH MN2+

Gouet, P., Fabry, B., Guillet, V., Birck, C., Mourey, L., Kahn, D., Samama, J.P.

(1999) Structure 7: 1517-1526

Released	1999-11-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sinorhizobium meliloti
Macromolecule	TRANSCRIPTIONAL REGULATORY PROTEIN FIXJ (protein)
Unique Ligands	15P, MN

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1DCM \| pdb_00001dcm	Download File View File

STRUCTURE OF UNPHOSPHORYLATED FIXJ-N WITH AN ATYPICAL CONFORMER (MONOMER A)

Gouet, P., Fabry, B., Guillet, V., Birck, C., Mourey, L., Kahn, D., Samama, J.P.

(1999) Structure 7: 1517-1526

Released	2000-11-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Sinorhizobium meliloti
Macromolecule	TRANSCRIPTIONAL REGULATORY PROTEIN FIXJ (protein)
Unique Ligands	MG

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1DVO \| pdb_00001dvo	Download File View File

THE X-RAY CRYSTAL STRUCTURE OF FINO, A REPRESSOR OF BACTERIAL CONJUGATION

Ghetu, A.F., Gubbins, M.J., Frost, L.S., Glover, J.N.M.

(2000) Nat Struct Biol 7: 565-569

Released	2000-07-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	FERTILITY INHIBITION PROTEIN O (protein)

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1E3O \| pdb_00001e3o	Download File View File

Crystal structure of Oct-1 POU dimer bound to MORE

Remenyi, A., Tomilin, A., Pohl, E., Schoeler, H., Wilmanns, M.

(2001) Mol Cell 8: 569

Released	2001-11-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	OCTAMER-BINDING TRANSCRIPTION FACTOR 1 (protein) 5'-D(APTPGPCPAPTPGPAPGPGPA)-3' (nucleic acid) 5'-D(TPCPCPTPCPAPTPGPCPAPT)-3' (nucleic acid)

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1E50 \| pdb_00001e50	Download File View File

AML1/CBFbeta complex

Warren, A.J., Bravo, J., Williams, R.L., Rabbits, T.H.

(2000) EMBO J 19: 3004

Released	2001-07-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	CORE-BINDING FACTOR ALPHA SUBUNIT (protein) CORE-BINDING FACTOR CBF-BETA (protein)

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1ENW \| pdb_00001enw	Download File View File

ELONGATION FACTOR TFIIS DOMAIN II

Morin, P.E., Awrey, D.E., Edwards, A.M., Arrowsmith, C.H.

(1996) Proc Natl Acad Sci U S A 93: 10604-10608

Released	2000-04-12
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	TRANSCRIPTION ELONGATION FACTOR S-II (protein)

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1EO0 \| pdb_00001eo0	Download File View File

CONSERVED DOMAIN COMMON TO TRANSCRIPTION FACTORS TFIIS, ELONGIN A, CRSP70

Booth, V., Koth, C., Edwards, A.M., Arrowsmith, C.H., Northeast Structural Genomics Consortium (NESG)

(2000) J Biological Chem 275: 31266-31268

Released	2000-05-03
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	TRANSCRIPTION ELONGATION FACTOR S-II (protein)

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1EQF \| pdb_00001eqf	Download File View File

CRYSTAL STRUCTURE OF THE DOUBLE BROMODOMAIN MODULE FROM HUMAN TAFII250

Jacobson, R.H., Ladurner, A.G., King, D.S., Tjian, R.

(2000) Science 288: 1422-1425

Released	2000-06-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	RNA POLYMERASE II TRANSCRIPTION INITIATION FACTOR (protein)
Unique Ligands	SO4

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1EXE \| pdb_00001exe	Download File View File

SOLUTION STRUCTURE OF A MUTANT OF TRANSCRIPTION FACTOR 1.

Liu, W., Vu, H.M., Geiduschek, E.P., Kearns, D.R.

(2000) J Mol Biology 302: 821-830

Released	2000-10-18
Method	SOLUTION NMR
Organisms	Okubovirus SPO1
Macromolecule	TRANSCRIPTION FACTOR 1 (protein)

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1EY1 \| pdb_00001ey1	Download File View File

SOLUTION STRUCTURE OF ESCHERICHIA COLI NUSB

Altieri, A.S., Mazzulla, M.J., Horita, D.A., Coats, R.H., Wingfield, P.T., Byrd, R.A.

(2000) Nat Struct Biol 7: 470-474

Released	2000-06-14
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	ANTITERMINATION FACTOR NUSB (protein)

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1EYV \| pdb_00001eyv	Download File View File

THE CRYSTAL STRUCTURE OF NUSB FROM MYCOBACTERIUM TUBERCULOSIS

Gopal, B., Haire, L.F., Cox, R.A., Colston, M.J., Major, S., Brannigan, J.A., Smerdon, S.J., Dodson, G.G., TB Structural Genomics Consortium (TBSGC)

(2000) Nat Struct Biol 7: 475-478

Released	2000-05-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	N-UTILIZING SUBSTANCE PROTEIN B HOMOLOG (protein)
Unique Ligands	PO4

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1F3U \| pdb_00001f3u	Download File View File

CRYSTAL STRUCTURE OF THE RAP30/74 INTERACTION DOMAINS OF HUMAN TFIIF

Gaiser, F., Tan, S., Richmond, T.J.

(2000) J Mol Biology 302: 1119-1127

Released	2000-10-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	TRANSCRIPTION INITIATION FACTOR IIF, ALPHA SUBUNIT (protein) TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT (protein)